PDCD6IP

General Information

Gene Name : PDCD6IP
Gene ID : ENSG00000170248.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PDCD6IP)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PDCD6IP	ENSG00000170248.14	66.05	51.24	58.64	ENCSR000AEF
HepG2	PDCD6IP	ENSG00000170248.14	27.19	43.20	35.20	ENCSR985KAT
K562	PDCD6IP	ENSG00000170248.14	65.67	72.02	68.84	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PDCD6IP is not avaliable on ENCORE database.

Proteins bound to RNA

PDCD6IP RNA is bound by 46 proteins.

CanvasJS.com

eCLIP assay for PDCD6IP is not avaliable on ENCORE database.

46 proteins are bound to PDCD6IP RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	33870319	33870413	+	CDS,intron-Proximal	3.89579	29.30392	K562	AQR
chr3	33868079	33868118	+	intron-Proximal	5.42935	25.89341	K562	AQR
chr3	33870020	33870101	+	intron-Distal	5.46353	25.84565	K562	QKI
chr3	33870200	33870287	+	intron-Distal,intron-Proximal	4.37418	24.40177	K562	QKI
chr3	33869992	33870097	+	intron-Distal	4.35216	24.28789	K562	RBFOX2
chr3	33886958	33887023	+	CDS	4.94962	24.18296	K562	LIN28B
chr3	33854993	33855083	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.57603	23.79452	K562	SF3B4
chr3	33868071	33868079	+	CDS,intron-Proximal	5.72346	19.80094	K562	AQR
chr3	33907967	33908032	+	3'-UTR,CDS	4.05969	18.26421	K562	IGF2BP2
chr3	33893397	33893452	+	intron-Distal	5.07718	18.09984	K562	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 144 entries

eCLIP assay for PDCD6IP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PDCD6IP is not available on ENCORE database.
92 RBPs can affect the levels of PDCD6IP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PDCD6IP is not available on ENCORE database.

92 RBPs can affect the gene expression of PDCD6IP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PDCD6IP	ENSG00000170248.9	5284.80180	2816.93920	0.90760	49.37140	47.94350	HepG2	SRFBP1
PDCD6IP	ENSG00000170248.9	3066.27920	1985.87380	0.62660	18.89720	17.89180	HepG2	SRSF1
PDCD6IP	ENSG00000170248.9	3958.10460	2494.03260	0.66620	18.09430	17.00310	HepG2	RBM22
PDCD6IP	ENSG00000170248.9	2626.92510	1615.65030	0.70120	17.73570	16.56020	HepG2	SRSF9
PDCD6IP	ENSG00000170248.9	2854.08250	1924.25380	0.56860	16.33630	15.12040	HepG2	ACO1
PDCD6IP	ENSG00000170248.9	3890.25930	2598.99690	0.58180	16.48860	15.06460	HepG2	AUH
PDCD6IP	ENSG00000170248.9	4215.06250	2368.42300	0.83150	11.73000	10.30160	HepG2	FIP1L1
PDCD6IP	ENSG00000170248.9	5328.58240	8132.25660	-0.60990	10.39530	9.36790	K562	AQR
PDCD6IP	ENSG00000170248.9	3192.85430	4766.96990	-0.57820	10.26050	9.16980	K562	HNRNPC
PDCD6IP	ENSG00000170248.9	2582.15860	1923.89760	0.42440	10.16220	9.05040	HepG2	CKAP4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 103 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PDCD6IP is not available on ENCORE database.

11 RBPs can affect the splicing of PDCD6IP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PDCD6IP	ENSG00000170248.9	chr3	+	33852588	33852683			33840112	33840429	33853563	33853618	0.18700	0.00000	0.00001	included	K562	U2AF1
SE	PDCD6IP	ENSG00000170248.9	chr3	+	33906734	33906922			33905497	33905621	33907842	33911194	-0.08400	0.00000	0.00005	excluded	K562	TARDBP
A3SS	PDCD6IP	ENSG00000170248.9	chr3	+	33870329	33870461			33870344	33870461	33867971	33868072	0.14100	0.00000	0.00000	longer	K562	EFTUD2
A3SS	PDCD6IP	ENSG00000170248.9	chr3	+	33870344	33870461			33870371	33870461	33867971	33868072	-0.08500	0.00000	0.00029	shorter	K562	SF3B4
A3SS	PDCD6IP	ENSG00000170248.9	chr3	+	33870329	33870461			33870344	33870461	33867971	33868072	0.17900	0.00000	0.00000	longer	K562	AQR
A3SS	PDCD6IP	ENSG00000170248.9	chr3	+	33870329	33870461			33870344	33870461	33867971	33868072	0.17200	0.00000	0.00002	longer	K562	PTBP1
A3SS	PDCD6IP	ENSG00000170248.9	chr3	+	33870329	33870461			33870344	33870461	33867971	33868072	0.19000	0.00000	0.00000	longer	K562	PRPF8
MXE	PDCD6IP	ENSG00000170248.9	chr3	+	33870329	33870461	33877535	33877758	33867971	33868072	33879695	33879819	0.09900	0.00000	0.00001	1included	K562	AQR
A3SS	PDCD6IP	ENSG00000170248.9	chr3	+	33870329	33870461			33870344	33870461	33867971	33868072	0.13400	0.00001	0.00061	longer	K562	U2AF1
MXE	PDCD6IP	ENSG00000170248.9	chr3	+	33870329	33870461	33877535	33877758	33867971	33868072	33879695	33879819	0.09000	0.00003	0.00216	1included	K562	PTBP1

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PDCD6IP

General Information

Functions

Localization

Domains (AlphaFold: PDCD6IP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PDCD6IP is not avaliable on ENCORE database.

46 proteins are bound to PDCD6IP RNA:

eCLIP assay for PDCD6IP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PDCD6IP is not available on ENCORE database.

92 RBPs can affect the gene expression of PDCD6IP :

The Knockdown/knockout RNA-Seq assay for PDCD6IP is not available on ENCORE database.

11 RBPs can affect the splicing of PDCD6IP :

The Knockdown/knockout RNA-Seq assay for PDCD6IP is not avaliable on ENCORE database.