PAM

General Information

Gene Name : PAM
Gene ID : ENSG00000145730.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PAM)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PAM	ENSG00000145730.20	13.93	10.75	12.34	ENCSR000AEF
HepG2	PAM	ENSG00000145730.20	29.00	37.21	33.11	ENCSR985KAT
K562	PAM	ENSG00000145730.20	0.36	0.52	0.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PAM is not avaliable on ENCORE database.

Proteins bound to RNA

PAM RNA is bound by 7 proteins.

CanvasJS.com

eCLIP assay for PAM is not avaliable on ENCORE database.

7 proteins are bound to PAM RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	102201546	102201681	+	3'-UTR,5'-UTR,intron-Distal	5.26623	23.24314	HepG2	DDX3X
chr5	102116511	102116588	+	intron-Distal	6.42234	21.40045	HepG2	PTBP1
chr5	102201752	102201802	+	3'-UTR,5'-UTR,intron-Distal	5.10024	11.01919	HepG2	DDX3X
chr5	102104152	102104245	+	intron-Distal	5.11801	10.10565	HepG2	QKI
chr5	102201704	102201750	+	3'-UTR,5'-UTR,intron-Distal	5.09771	8.30262	HepG2	DDX3X
chr5	102201853	102201926	+	3'-UTR,5'-UTR,CDS,intron-Distal	3.96771	7.30917	HepG2	DDX3X
chr5	102275008	102275084	+	intron-Distal	4.85310	6.76922	HepG2	PTBP1
chr5	102201802	102201853	+	3'-UTR,5'-UTR,intron-Distal	4.21968	6.48775	HepG2	DDX3X
chr5	102275792	102275882	+	intron-Distal	3.67479	6.03810	HepG2	HNRNPL
chr5	102300926	102301025	+	intron-Distal	4.55359	5.30852	HepG2	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 21 entries

eCLIP assay for PAM is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PAM is not available on ENCORE database.
105 RBPs can affect the levels of PAM.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PAM is not available on ENCORE database.

105 RBPs can affect the gene expression of PAM :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PAM	ENSG00000145730.16	465.58480	2660.92440	-2.51480	141.03410	138.90020	HepG2	SSB
PAM	ENSG00000145730.16	987.25270	2336.86110	-1.24310	52.32420	50.35290	HepG2	DKC1
PAM	ENSG00000145730.16	1041.26370	2595.85270	-1.31790	45.99130	44.41220	HepG2	TIAL1
PAM	ENSG00000145730.16	1360.57260	2671.40710	-0.97340	38.62390	36.58650	HepG2	HNRNPU
PAM	ENSG00000145730.16	869.98020	2598.79820	-1.57880	37.31460	35.16130	HepG2	MAGOH
PAM	ENSG00000145730.16	5606.70800	3064.65550	0.87130	36.42850	35.15160	HepG2	SRFBP1
PAM	ENSG00000145730.16	1003.02160	2417.66610	-1.26930	32.98830	31.22610	HepG2	HNRNPA1
PAM	ENSG00000145730.16	5334.38930	3197.78550	0.73810	24.78080	23.25360	HepG2	CELF1
PAM	ENSG00000145730.16	3556.49660	1944.36120	0.87110	20.83800	19.68040	HepG2	ZNF622
PAM	ENSG00000145730.16	3912.74910	2454.01580	0.67290	21.44650	19.60950	HepG2	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 116 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PAM is not available on ENCORE database.

13 RBPs can affect the splicing of PAM :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PAM	ENSG00000145730.16	chr5	+	102309819	102310140	102296861	102296933	102325975	102326105	-0.21200	0.00000	0.00035	excluded	HepG2	RBM22
SE	PAM	ENSG00000145730.16	chr5	+	102309819	102310140	102296861	102296933	102325975	102326105	0.40800	0.00000	0.00000	included	HepG2	U2AF2
SE	PAM	ENSG00000145730.16	chr5	+	102353037	102353137	102345454	102345570	102355493	102355547	-0.10400	0.00000	0.00000	excluded	HepG2	U2AF2
SE	PAM	ENSG00000145730.16	chr5	+	102309819	102310140	102296861	102296933	102325975	102326105	0.35200	0.00000	0.00000	included	HepG2	PTBP1
SE	PAM	ENSG00000145730.16	chr5	+	102309819	102310140	102296861	102296933	102325975	102326105	0.39800	0.00000	0.00000	included	HepG2	SRSF1
SE	PAM	ENSG00000145730.16	chr5	+	102360834	102361038	102355493	102355547	102363888	102363942	-0.23000	0.00001	0.00034	excluded	HepG2	U2AF2
SE	PAM	ENSG00000145730.16	chr5	+	102309819	102310140	102296861	102296933	102325975	102326105	0.22300	0.00002	0.00394	included	HepG2	QKI
SE	PAM	ENSG00000145730.16	chr5	+	102309819	102310140	102296861	102296933	102325975	102326105	0.25900	0.00002	0.00188	included	HepG2	MATR3
SE	PAM	ENSG00000145730.16	chr5	+	102309819	102310140	102296861	102296933	102325975	102326105	0.25300	0.00003	0.07544	included	HepG2	DDX52
SE	PAM	ENSG00000145730.16	chr5	+	102360837	102361038	102355493	102355547	102363885	102363942	0.29800	0.00005	0.00995	included	HepG2	TAF15

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PAM

General Information

Functions

Localization

Domains (AlphaFold: PAM)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PAM is not avaliable on ENCORE database.

7 proteins are bound to PAM RNA:

eCLIP assay for PAM is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PAM is not available on ENCORE database.

105 RBPs can affect the gene expression of PAM :

The Knockdown/knockout RNA-Seq assay for PAM is not available on ENCORE database.

13 RBPs can affect the splicing of PAM :

The Knockdown/knockout RNA-Seq assay for PAM is not avaliable on ENCORE database.