LSM12

General Information

Gene Name       : LSM12
Gene ID             : ENSG00000161654.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: LSM12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LSM12ENSG00000161654.959.7159.7559.73ENCSR000AEF
HepG2LSM12ENSG00000161654.931.8956.0543.97ENCSR985KAT
K562LSM12ENSG00000161654.971.1583.1777.16ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LSM12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LSM12 RNA is bound by 17 proteins.  







eCLIP assay for LSM12 is not avaliable on ENCORE database.





17 proteins are bound to LSM12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174211284142112892-3'-UTR,intron-Distal3.115547.70474K562DDX55
chr174211284642112893-3'-UTR,intron-Distal3.769358.44273K562PABPC4
chr174211311542113168-3'-UTR,intron-Distal3.037543.18226K562UPF1
chr174211283742112935-3'-UTR,intron-Distal3.539737.83682K562TIA1
chr174214394942144013-5'-UTR,CDS,intron-Distal5.225008.90399HepG2DDX3X
chr174211759042117638-CDS,intron-Distal,intron-Proximal3.629616.16549HepG2U2AF2
chr174211759542117637-CDS,intron-Distal,intron-Proximal3.570413.00221HepG2U2AF1
chr174211467342114790-CDS,intron-Distal,intron-Proximal5.227075.58842K562EFTUD2
chr174211464942114759-intron-Distal,intron-Proximal5.392175.24235HepG2EFTUD2
chr174214165842141766-intron-Distal4.947357.78973K562TARDBP
chr174214354342143627-intron-Distal4.252243.90256HepG2PRPF4
chr174212312642123267-intron-Distal4.114313.57189K562ILF3
chr174214345342143506-intron-Distal4.506664.13073HepG2GTF2F1
chr174214354542143632-intron-Distal3.509483.14777HepG2GTF2F1
chr174213649042136569-intron-Distal4.622446.49093K562TARDBP
chr174214370442143819-intron-Distal,intron-Proximal4.732967.23918HepG2PRPF4
chr174213400742134070-intron-Distal3.908303.38413HepG2HNRNPC
chr174214022342140277-intron-Distal3.731483.43813HepG2HNRNPC
chr174214334242143446-intron-Distal5.299148.99652HepG2GTF2F1
chr174214377142143832-intron-Distal,intron-Proximal4.048756.19659HepG2AQR
chr174214333642143499-intron-Distal3.211236.58413HepG2FAM120A
chr174214334842143474-intron-Distal4.093054.22598K562CSTF2T
chr174214329842143397-intron-Distal4.738956.57216HepG2PRPF4
chr174214335242143497-intron-Distal3.471093.98555K562GTF2F1
chr174214345042143521-intron-Distal3.508214.52939HepG2PRPF4
chr174211473042114768-intron-Distal,intron-Proximal4.992115.26064K562AQR
chr174212909742129151-intron-Distal3.389683.89564K562XRCC6
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LSM12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LSM12 is not available on ENCORE database.

  • 93 RBPs can affect the levels of LSM12.  








The Knockdown/knockout RNA-Seq assay for LSM12 is not available on ENCORE database.





93 RBPs can affect the gene expression of LSM12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LSM12ENSG00000161654.51679.579601235.154400.443308.095807.16680HepG2ACO1
LSM12ENSG00000161654.51804.986802320.91180-0.362703.506101.93660HepG2ATP5C1
LSM12ENSG00000161654.51430.805601998.08240-0.481809.068207.94410HepG2AUH
LSM12ENSG00000161654.5759.824401051.56040-0.468802.781501.42350HepG2CSTF2T
LSM12ENSG00000161654.51529.901101889.08660-0.304305.221504.24910HepG2DAZAP1
LSM12ENSG00000161654.5633.24290990.35240-0.645205.872403.94620HepG2DDX28
LSM12ENSG00000161654.5713.442001842.33840-1.3687026.4171024.69400HepG2DDX3X
LSM12ENSG00000161654.51639.796202152.71280-0.392603.486102.35950HepG2DDX5
LSM12ENSG00000161654.52232.061201582.724300.495903.636602.93620HepG2DDX6
LSM12ENSG00000161654.5894.058701181.70690-0.402404.967404.10900HepG2DKC1
LSM12ENSG00000161654.51230.757901404.68560-0.190701.998201.42730HepG2DNAJC2
LSM12ENSG00000161654.51207.245201521.39460-0.333702.195701.66040HepG2EIF2S1
LSM12ENSG00000161654.51130.429401681.26350-0.572704.949604.09770HepG2EIF4A3
LSM12ENSG00000161654.51271.119001637.05370-0.365001.896501.31960HepG2EIF4B
LSM12ENSG00000161654.51978.333302294.04720-0.213602.376401.81160HepG2ETF1
LSM12ENSG00000161654.5656.854501074.60140-0.7102010.464708.20160HepG2FAM120A
LSM12ENSG00000161654.51255.305702675.60830-1.091806.208004.68790HepG2FTO
LSM12ENSG00000161654.5777.968701573.65820-1.0163014.2545012.80300HepG2G3BP1
LSM12ENSG00000161654.5822.745401068.13040-0.376602.379901.43900HepG2GNB2L1
LSM12ENSG00000161654.52084.893003028.44250-0.538602.107801.54480HepG2GPKOW
LSM12ENSG00000161654.51132.857401430.72060-0.336802.469101.85620HepG2HNRNPA1
LSM12ENSG00000161654.5903.877101591.43080-0.8161012.5393011.15730HepG2HNRNPC
LSM12ENSG00000161654.51687.961801979.58220-0.229902.097501.46660HepG2HNRNPF
LSM12ENSG00000161654.51157.111502890.06820-1.320607.634606.64820HepG2HNRNPLL
LSM12ENSG00000161654.51293.262501580.90780-0.289703.661102.97320HepG2HNRNPU
LSM12ENSG00000161654.51549.044301949.32970-0.331602.896302.15550HepG2IGF2BP1
LSM12ENSG00000161654.51258.235001599.55720-0.346302.396401.76290HepG2IGF2BP2
LSM12ENSG00000161654.51075.359801614.84180-0.5866014.8511013.30700HepG2ILF2
LSM12ENSG00000161654.5774.816401164.14930-0.587303.788602.21320HepG2ILF3
LSM12ENSG00000161654.51157.390101608.94100-0.475203.075202.00990HepG2KHSRP
LSM12ENSG00000161654.5560.607301746.73530-1.6396034.4393032.41420HepG2NCBP2
LSM12ENSG00000161654.51140.697901536.35680-0.429606.576505.70240HepG2PCBP1
LSM12ENSG00000161654.5758.244101008.48140-0.411502.715001.91320HepG2PRPF8
LSM12ENSG00000161654.51326.769301563.32190-0.236702.350501.83900HepG2PTBP1
LSM12ENSG00000161654.51336.843501788.07470-0.419604.594303.84900HepG2PUF60
LSM12ENSG00000161654.51601.194301898.04850-0.245403.803303.13160HepG2PUM1
LSM12ENSG00000161654.51363.615301896.70670-0.476106.798505.76380HepG2PUM2
LSM12ENSG00000161654.51343.275001620.42830-0.270603.000702.36240HepG2RECQL
LSM12ENSG00000161654.51553.725901169.934900.409204.165603.42690HepG2RPS19
LSM12ENSG00000161654.5902.918601199.17590-0.409402.249801.52790HepG2RPS3A
LSM12ENSG00000161654.52861.874202150.231400.412402.757202.08410HepG2SF3A3
LSM12ENSG00000161654.51264.762001714.33770-0.438808.838207.69690HepG2SLBP
LSM12ENSG00000161654.5840.232001396.68840-0.733203.161601.44980HepG2SLTM
LSM12ENSG00000161654.51379.649001641.78110-0.251003.304102.61160HepG2SMN1
LSM12ENSG00000161654.51414.949602165.64290-0.6140016.0992015.15300HepG2SRFBP1
LSM12ENSG00000161654.51939.002101698.858400.190601.954801.53820HepG2SRSF1
LSM12ENSG00000161654.51522.710701765.37740-0.213302.362201.77830HepG2SRSF5
LSM12ENSG00000161654.51643.361901944.85190-0.243002.744102.05060HepG2SRSF7
LSM12ENSG00000161654.51495.903501880.30290-0.329904.814704.17480HepG2SSB
LSM12ENSG00000161654.5914.209501301.41810-0.509503.844703.06780HepG2SUPV3L1
LSM12ENSG00000161654.51299.450901527.04370-0.232801.917101.43550HepG2TAF15
LSM12ENSG00000161654.51160.625401536.07760-0.404302.313101.84740HepG2TIAL1
LSM12ENSG00000161654.51461.511701746.75610-0.257202.171001.40290HepG2TUFM
LSM12ENSG00000161654.53007.477902221.588100.436904.310703.53560HepG2U2AF1
LSM12ENSG00000161654.53737.970401673.518301.159304.133102.91690HepG2U2AF2
LSM12ENSG00000161654.51305.935901848.83690-0.501504.455103.37550HepG2UBE2L3
LSM12ENSG00000161654.53116.553401841.063200.7593027.2498025.67210HepG2UTP3
LSM12ENSG00000161654.51386.367702141.81660-0.6275018.3300016.86790HepG2ZC3H8
LSM12ENSG00000161654.53385.940002241.786600.5948016.8455015.56900K562AGGF1
LSM12ENSG00000161654.51994.794602884.74150-0.532207.209205.10830K562APOBEC3C
LSM12ENSG00000161654.52318.187403847.64660-0.731007.808405.92490K562CPEB4
LSM12ENSG00000161654.52770.163004128.67000-0.575705.885404.74600K562CPSF6
LSM12ENSG00000161654.5988.727201408.78020-0.510805.953104.35410K562DDX3X
LSM12ENSG00000161654.54814.797203982.655500.273602.198801.60720K562DDX47
LSM12ENSG00000161654.53809.027902510.185300.6015014.9166012.55240K562DKC1
LSM12ENSG00000161654.51295.079501547.47370-0.256902.552101.40120K562EIF2S1
LSM12ENSG00000161654.51645.601602134.31540-0.375205.445704.48650K562EIF2S2
LSM12ENSG00000161654.52410.874801493.094800.691203.063001.99870K562EIF3A
LSM12ENSG00000161654.51670.715901208.369100.467306.610105.39490K562EIF3G
LSM12ENSG00000161654.51063.605601471.84630-0.468704.675103.60970K562EIF4A3
LSM12ENSG00000161654.52715.976403269.26760-0.267503.255702.23950K562EIF4G2
LSM12ENSG00000161654.5683.558801211.81560-0.826008.338805.63330K562FAM120A
LSM12ENSG00000161654.52869.060704200.53830-0.550002.661601.82340K562FMR1
LSM12ENSG00000161654.51964.875103560.21120-0.857508.421706.73300K562FTO
LSM12ENSG00000161654.51837.429601530.661400.263402.883802.26870K562FXR1
LSM12ENSG00000161654.52028.770201588.582100.352801.989301.40220K562G3BP2
LSM12ENSG00000161654.52974.039803941.98170-0.406502.384301.64450K562GPKOW
LSM12ENSG00000161654.51053.115702159.09750-1.0358015.0162013.71160K562HNRNPC
LSM12ENSG00000161654.52215.612601733.828100.353602.742301.51450K562HNRNPK
LSM12ENSG00000161654.51096.408201533.61290-0.484104.217802.37330K562ILF3
LSM12ENSG00000161654.53282.350002475.582400.406904.588403.48260K562KIF1C
LSM12ENSG00000161654.52581.056702089.885100.304402.736301.35770K562LARP7
LSM12ENSG00000161654.53872.505702773.272600.481604.927603.64550K562MBNL1
LSM12ENSG00000161654.52675.255903847.76420-0.524303.581002.57710K562METAP2
LSM12ENSG00000161654.52302.047603484.71420-0.598108.254406.35490K562MSI2
LSM12ENSG00000161654.52316.371302704.16490-0.223303.042802.19680K562MTPAP
LSM12ENSG00000161654.53374.289301943.860000.795605.574804.16680K562NAA15
LSM12ENSG00000161654.5866.591101469.70140-0.7621013.1512010.59170K562NCBP2
LSM12ENSG00000161654.52549.946103004.72420-0.236803.837802.97440K562NSUN2
LSM12ENSG00000161654.51977.645903079.51510-0.638903.919102.92830K562PCBP3
LSM12ENSG00000161654.51499.993902361.92930-0.655004.750803.70070K562POLR2G
LSM12ENSG00000161654.51747.876401324.914400.399603.545302.69620K562PRPF8
LSM12ENSG00000161654.53042.493703717.45030-0.289103.893302.75130K562PUM2
LSM12ENSG00000161654.54643.788002313.443201.0052020.6351019.18410K562PUS1
LSM12ENSG00000161654.53925.512502254.040200.8003023.0424021.26010K562RBM15
LSM12ENSG00000161654.52125.567901765.724800.267502.439201.51230K562RCC2
LSM12ENSG00000161654.51429.523401788.62230-0.323302.403501.39820K562NELFE
LSM12ENSG00000161654.51966.619501349.712200.543005.013803.91030K562RPS19
LSM12ENSG00000161654.52876.770002105.050100.450504.353502.98380K562SAFB
LSM12ENSG00000161654.5855.958101237.92310-0.532306.645803.95080K562SLTM
LSM12ENSG00000161654.52703.592603037.34430-0.167902.256601.40210K562SRPK2
LSM12ENSG00000161654.53516.775102369.303000.569702.164401.43750K562SYNCRIP
LSM12ENSG00000161654.51267.522501758.72880-0.472504.529803.61990K562TARDBP
LSM12ENSG00000161654.51345.464501696.50790-0.334503.166702.28310K562TIA1
LSM12ENSG00000161654.52949.577204006.85160-0.442003.166901.66280K562TRIP6
LSM12ENSG00000161654.52261.664101590.159800.508107.655906.31310K562U2AF2
LSM12ENSG00000161654.52391.397503185.96060-0.413906.995605.91240K562UPF1
LSM12ENSG00000161654.53396.590504238.71860-0.319502.491201.35610K562UTP3
LSM12ENSG00000161654.51968.420002726.14570-0.469806.430705.06320K562WDR3
LSM12ENSG00000161654.52269.448502755.32180-0.279902.354301.56840K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LSM12 is not available on ENCORE database.





10 RBPs can affect the splicing of LSM12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELSM12ENSG00000161654.5chr17-4211422942114470421135344211366842114779421149060.389000.000000.00000includedK562XRCC6
SELSM12ENSG00000161654.5chr17-4211422942114470421135344211366842114779421149060.051000.000000.00026includedHepG2DKC1
SELSM12ENSG00000161654.5chr17-421147914211490642112003421136684211751442117624-0.068000.000310.00648excludedK562PUS1
SELSM12ENSG00000161654.5chr17-4211422942114470421135344211366842114779421149060.169000.000000.00000includedHepG2XRCC6
SELSM12ENSG00000161654.5chr17-4211422942114470421135344211366842114779421149060.101000.000000.00000includedHepG2HNRNPC
SELSM12ENSG00000161654.5chr17-4211422942114470421135344211366842114779421149060.103000.000000.00000includedK562HNRNPC
A3SSLSM12ENSG00000161654.5chr17-4211479142115027421147914211490642117514421176950.072000.000000.00000longerK562AQR
A5SSLSM12ENSG00000161654.5chr17-421438314214410142143871421441014214116842141302-0.085000.000300.02876shorterHepG2SF3B4
MXELSM12ENSG00000161654.5chr17-4211479142114906421175144211769542112003421136684214116842141302-0.522000.003270.080922includedHepG2SF3A3
MXELSM12ENSG00000161654.5chr17-42114779421149064211751442117624421120024211366842141168421413020.176000.000000.000091includedK562XRCC6
MXELSM12ENSG00000161654.5chr17-42114779421149064211751442117624421120024211366842141168421413020.183000.000000.000001includedHepG2SFPQ
MXELSM12ENSG00000161654.5chr17-42114779421149064211751442117624421120024211366842141168421413020.196000.000000.000001includedHepG2U2AF2
MXELSM12ENSG00000161654.5chr17-42114779421149064211751442117624421120034211366842141168421413020.126000.000000.000021includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LSM12 is not avaliable on ENCORE database.