LONRF1

General Information

Gene Name       : LONRF1
Gene ID             : ENSG00000154359.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LONRF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LONRF1ENSG00000154359.1224.3019.5921.95ENCSR000AEF
HepG2LONRF1ENSG00000154359.1214.1024.7819.44ENCSR985KAT
K562LONRF1ENSG00000154359.126.377.166.77ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LONRF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LONRF1 RNA is bound by 12 proteins.  







eCLIP assay for LONRF1 is not avaliable on ENCORE database.





12 proteins are bound to LONRF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr81258023312580308-3'-UTR,intron-Distal,intron-Proximal5.475928.04355K562EIF4G2
chr81257995912579995-3'-UTR,intron-Distal5.166535.76540K562PUM2
chr81259454712594603-3'-UTR,5'-UTR,CDS,intron-Distal3.317304.34695HepG2BCLAF1
chr81258924312589276-3'-UTR,CDS,intron-Distal,intron-Proximal3.065883.94979HepG2BCLAF1
chr81258334612583384-3'-UTR,CDS,intron-Distal3.530343.68471HepG2BCLAF1
chr81258668712586835-3'-UTR,5'-UTR,CDS,intron-Distal3.1606211.30774HepG2BCLAF1
chr81258021812580314-3'-UTR,intron-Distal,intron-Proximal4.296227.20180K562TARDBP
chr81257968912579746-3'-UTR,intron-Distal4.435064.01944HepG2FUBP3
chr81258640912586470-3'-UTR,CDS,intron-Distal,intron-Proximal3.906385.65086HepG2BCLAF1
chr81257976412579820-3'-UTR,intron-Distal5.090535.09993K562PUM2
chr81259550512595550-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.530343.68471HepG2BCLAF1
chr81259420412594296-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.603328.25092HepG2BCLAF1
chr81258023312580298-3'-UTR,intron-Distal,intron-Proximal3.132803.56709HepG2IGF2BP1
chr81257950812579639-3'-UTR,intron-Distal3.995766.67525HepG2FUBP3
chr81261157512611652-5'-UTR,intron-Distal3.034563.41236HepG2CSTF2T
chr81261156912611665-5'-UTR,intron-Distal4.537845.01722K562CSTF2T
chr81260067012600701-5'-UTR,CDS,intron-Distal,intron-Proximal3.881365.06180HepG2BCLAF1
chr81261158412611652-5'-UTR,intron-Distal3.149723.79378HepG2FUS
chr81261178112611907-5'-UTR,intron-Distal,intron-Proximal3.034404.79158HepG2PRPF4
chr81261156612611671-5'-UTR,intron-Distal3.128257.15872HepG2NKRF
chr81259847512598506-5'-UTR,CDS,intron-Distal,intron-Proximal3.720394.17155HepG2BCLAF1
chr81261182512611873-5'-UTR,intron-Distal,intron-Proximal4.040313.94684HepG2CSTF2T
chr81261157512611644-5'-UTR,intron-Distal4.120643.30664K562NONO
chr81261289212613000-5'-UTR,CDS,intron-Distal,intron-Proximal4.4623910.34792HepG2DDX3X
chr81261157312611689-5'-UTR,intron-Distal5.9837517.63100HepG2PRPF4
chr81259461812594651-CDS,intron-Distal,intron-Proximal3.080343.55800HepG2BCLAF1
chr81261279612612858-CDS,intron-Distal5.243339.60748HepG2DDX3X
chr81261193812612015-intron-Distal,intron-Proximal3.797605.16304HepG2CSTF2T
chr81261190712612000-intron-Distal,intron-Proximal4.171838.83932HepG2PRPF4
chr81261200012612077-intron-Distal3.558518.11515HepG2PRPF4
chr81261200512612080-intron-Distal3.505265.75313HepG2NKRF
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LONRF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LONRF1 is not available on ENCORE database.

  • 125 RBPs can affect the levels of LONRF1.  








The Knockdown/knockout RNA-Seq assay for LONRF1 is not available on ENCORE database.





125 RBPs can affect the gene expression of LONRF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LONRF1ENSG00000154359.8450.42900900.02990-0.9987010.888109.21990HepG2ABCF1
LONRF1ENSG00000154359.8707.725101839.93920-1.3784022.3294020.97620HepG2AKAP1
LONRF1ENSG00000154359.8385.99580840.06560-1.1219024.4431022.51360HepG2AKAP8L
LONRF1ENSG00000154359.81344.418201074.311500.323502.574501.90900HepG2AUH
LONRF1ENSG00000154359.8391.70670591.54270-0.594703.167402.16390HepG2BCCIP
LONRF1ENSG00000154359.8382.14430498.27080-0.382802.102901.57630HepG2BOP1
LONRF1ENSG00000154359.8473.857301016.55830-1.101209.697607.88070HepG2CCAR1
LONRF1ENSG00000154359.8766.565201446.40920-0.9160012.7142011.18980HepG2CIRBP
LONRF1ENSG00000154359.8480.21160835.95050-0.7997015.3414014.03980HepG2CKAP4
LONRF1ENSG00000154359.8588.879901071.46980-0.863506.409205.24470HepG2CNOT7
LONRF1ENSG00000154359.8734.33540457.432200.682806.039805.05900HepG2CPSF6
LONRF1ENSG00000154359.81365.901201046.968600.383506.128905.08680HepG2DAZAP1
LONRF1ENSG00000154359.8448.09970633.62070-0.499803.829703.04430HepG2DDX21
LONRF1ENSG00000154359.8664.427101762.62170-1.4075022.8382021.22090HepG2DDX3X
LONRF1ENSG00000154359.81094.939801513.89490-0.467403.333002.66190HepG2DDX6
LONRF1ENSG00000154359.8585.37540799.97200-0.450604.703003.86220HepG2DKC1
LONRF1ENSG00000154359.8972.92550635.465600.614403.896903.07390HepG2DNAJC21
LONRF1ENSG00000154359.8484.65270629.87300-0.378103.624202.89640HepG2DNAJC2
LONRF1ENSG00000154359.8412.21640700.98840-0.766006.752105.37650HepG2EEF2
LONRF1ENSG00000154359.8290.32260584.42070-1.0094010.695108.55110HepG2EFTUD2
LONRF1ENSG00000154359.81005.419201455.57580-0.533804.693103.93240HepG2EIF2S1
LONRF1ENSG00000154359.8522.91000682.69480-0.384702.728701.56920HepG2EIF2S2
LONRF1ENSG00000154359.8389.65660598.21130-0.618505.805304.32560HepG2EIF3G
LONRF1ENSG00000154359.8513.437101608.69450-1.6476023.6912021.86250HepG2EIF4A3
LONRF1ENSG00000154359.8782.279601032.91550-0.401003.959102.98930HepG2EIF4G1
LONRF1ENSG00000154359.8603.60320779.60700-0.369102.400701.38270HepG2ESF1
LONRF1ENSG00000154359.8954.871401233.36950-0.369203.692803.01500HepG2ETF1
LONRF1ENSG00000154359.8657.90550817.05310-0.312502.124801.39520HepG2EWSR1
LONRF1ENSG00000154359.8385.68640566.76250-0.555303.840101.81890HepG2EXOSC9
LONRF1ENSG00000154359.8662.72300908.79880-0.455602.826802.04750HepG2FIP1L1
LONRF1ENSG00000154359.8165.72630458.23200-1.467307.472805.81370HepG2FTO
LONRF1ENSG00000154359.81132.62740831.541900.445704.109203.15910HepG2FUBP3
LONRF1ENSG00000154359.8415.640201622.76600-1.9650039.7327037.49060HepG2FXR1
LONRF1ENSG00000154359.8726.784801505.53190-1.0507014.8480013.36760HepG2G3BP1
LONRF1ENSG00000154359.81082.681001598.08190-0.561705.540104.26620HepG2G3BP2
LONRF1ENSG00000154359.8281.88440506.69240-0.846007.084205.66260HepG2GEMIN5
LONRF1ENSG00000154359.8524.81400723.91090-0.464002.608501.62230HepG2GNB2L1
LONRF1ENSG00000154359.8544.50020991.92180-0.865307.028105.26030HepG2GRSF1
LONRF1ENSG00000154359.8233.41080641.55370-1.4587022.0304020.50680HepG2HNRNPA1
LONRF1ENSG00000154359.8386.09880713.61610-0.886209.817708.57830HepG2HNRNPC
LONRF1ENSG00000154359.81035.323201524.07070-0.557805.819304.83490HepG2HNRNPK
LONRF1ENSG00000154359.8317.83900626.98950-0.9801012.2810010.51880HepG2HNRNPM
LONRF1ENSG00000154359.8316.05900708.89770-1.1654023.6228021.98730HepG2HNRNPU
LONRF1ENSG00000154359.8673.897401036.25210-0.620804.497302.93040HepG2HSPD1
LONRF1ENSG00000154359.81187.210501530.40380-0.366302.644801.98230HepG2IGF2BP2
LONRF1ENSG00000154359.8709.024401435.96210-1.018105.244003.91130HepG2IGF2BP3
LONRF1ENSG00000154359.8493.44860724.11440-0.553308.055806.87370HepG2ILF2
LONRF1ENSG00000154359.8614.82570764.33810-0.314003.014401.95370HepG2KIF1C
LONRF1ENSG00000154359.8521.52980744.72180-0.514003.679102.27470HepG2LIN28B
LONRF1ENSG00000154359.8689.141601623.33100-1.2361019.4745017.81940HepG2MAGOH
LONRF1ENSG00000154359.8413.13260600.60990-0.539803.482401.68190HepG2MARK2
LONRF1ENSG00000154359.8904.941101632.47180-0.851209.833808.70130HepG2MATR3
LONRF1ENSG00000154359.8340.81430595.60290-0.805404.334303.03380HepG2METAP2
LONRF1ENSG00000154359.8566.723101670.97050-1.5600028.5653026.69660HepG2NCBP2
LONRF1ENSG00000154359.8472.83050641.18550-0.439402.767601.34910HepG2NIP7
LONRF1ENSG00000154359.8307.19100533.92050-0.797503.634202.37060HepG2NONO
LONRF1ENSG00000154359.8610.89620438.776100.477303.127302.33310HepG2NSUN2
LONRF1ENSG00000154359.8213.19850425.45800-0.996805.993103.71530HepG2PA2G4
LONRF1ENSG00000154359.8500.13060701.67950-0.488505.140304.03340HepG2PARN
LONRF1ENSG00000154359.81057.207001502.08380-0.506708.797407.81390HepG2PCBP1
LONRF1ENSG00000154359.8330.58370470.60360-0.509503.674102.25260HepG2PKM
LONRF1ENSG00000154359.8727.79800537.986600.435904.368703.42040HepG2PRPF4
LONRF1ENSG00000154359.8302.43170817.91780-1.435305.888804.17470HepG2PRPF6
LONRF1ENSG00000154359.8313.27410448.78070-0.518602.488901.72050HepG2PRPF8
LONRF1ENSG00000154359.8908.697701528.42970-0.7502017.2485016.10650HepG2PTBP1
LONRF1ENSG00000154359.8497.67260991.03230-0.9937015.4793014.22350HepG2PUF60
LONRF1ENSG00000154359.8850.649601052.03080-0.306503.560702.90540HepG2PUM1
LONRF1ENSG00000154359.8573.51160851.67990-0.570508.362107.39060HepG2PUS1
LONRF1ENSG00000154359.8950.343701655.32020-0.8006016.2362014.90190HepG2QKI
LONRF1ENSG00000154359.81143.99270750.991500.607103.035802.29980HepG2RAVER1
LONRF1ENSG00000154359.81591.520701038.044600.616406.303905.07610HepG2RBM15
LONRF1ENSG00000154359.8339.87220850.51880-1.323404.508802.12130HepG2RBM17
LONRF1ENSG00000154359.8590.453401030.88610-0.804008.644707.84740HepG2RBM22
LONRF1ENSG00000154359.82436.416401502.312100.6975012.3235010.96260HepG2RBM25
LONRF1ENSG00000154359.8631.02830855.01640-0.438202.594901.63500HepG2RBM27
LONRF1ENSG00000154359.8715.493301700.99280-1.2494042.6495041.09980HepG2NELFE
LONRF1ENSG00000154359.8818.010701584.24850-0.9536026.6125025.04940HepG2RECQL
LONRF1ENSG00000154359.8393.07030561.94340-0.515603.475102.72330HepG2RPLP0
LONRF1ENSG00000154359.8166.53620553.70930-1.7333028.6460027.01790HepG2RPS19
LONRF1ENSG00000154359.8443.73250788.59310-0.829608.325106.98590HepG2RPS2
LONRF1ENSG00000154359.8583.438101076.18850-0.883308.083806.73680HepG2RPS3A
LONRF1ENSG00000154359.8407.35550804.93780-0.9826011.247609.11000HepG2RPS5
LONRF1ENSG00000154359.8518.09820631.30100-0.285102.155201.57410HepG2SAFB2
LONRF1ENSG00000154359.8317.41160555.76930-0.808107.007905.52880HepG2SERBP1
LONRF1ENSG00000154359.8390.13820821.88170-1.074903.365401.83200HepG2SF1
LONRF1ENSG00000154359.8708.56300979.77700-0.467602.730102.06070HepG2SF3A3
LONRF1ENSG00000154359.8652.03000489.771400.412702.671101.97790HepG2SF3B1
LONRF1ENSG00000154359.8963.213601591.28680-0.7243016.1916014.94230HepG2SF3B4
LONRF1ENSG00000154359.81151.57960950.258300.277103.130802.39200HepG2SLBP
LONRF1ENSG00000154359.8442.54670736.19750-0.7343012.3196011.11360HepG2SMN1
LONRF1ENSG00000154359.8702.043901660.96130-1.2424044.4429043.04840HepG2SRSF1
LONRF1ENSG00000154359.8251.09790527.02990-1.069608.414306.59040HepG2SRSF3
LONRF1ENSG00000154359.8783.24100978.50750-0.321103.103802.44610HepG2SRSF5
LONRF1ENSG00000154359.8676.46500512.554900.400204.054803.23740HepG2SRSF7
LONRF1ENSG00000154359.81295.98320701.757900.884907.246105.35160HepG2SUB1
LONRF1ENSG00000154359.8799.737801112.82620-0.476607.243306.31750HepG2SUCLG1
LONRF1ENSG00000154359.8840.08410578.997600.536903.960603.17410HepG2SUPV3L1
LONRF1ENSG00000154359.8840.156601492.94330-0.8294017.8318016.58610HepG2TAF15
LONRF1ENSG00000154359.8450.996601013.74150-1.168507.269505.63470HepG2TBRG4
LONRF1ENSG00000154359.8250.27070688.80310-1.4606027.9441026.66220HepG2TIAL1
LONRF1ENSG00000154359.8441.32660694.98570-0.655108.701907.78900HepG2TRIM56
LONRF1ENSG00000154359.8456.10990777.37970-0.769207.596506.56030HepG2U2AF1
LONRF1ENSG00000154359.8611.881701024.83830-0.744106.822205.47950HepG2UBE2L3
LONRF1ENSG00000154359.8665.30280868.91560-0.385203.960403.14820HepG2UPF1
LONRF1ENSG00000154359.8635.03030893.09950-0.492004.643703.32400HepG2UTP18
LONRF1ENSG00000154359.8328.91970838.89890-1.3508027.2109025.63450HepG2UTP3
LONRF1ENSG00000154359.8441.52130825.67200-0.903103.318002.15490HepG2XRCC6
LONRF1ENSG00000154359.8673.65610530.934600.343403.025502.32910HepG2ZC3H8
LONRF1ENSG00000154359.8759.15430955.63630-0.332103.570702.97080HepG2ZNF622
LONRF1ENSG00000154359.8139.71370216.46240-0.631602.668201.47510K562ABCF1
LONRF1ENSG00000154359.8168.43370318.78570-0.920405.915805.11420K562AQR
LONRF1ENSG00000154359.8163.14660294.01380-0.849706.789705.83360K562DDX47
LONRF1ENSG00000154359.8442.98650313.727000.497703.772502.72730K562DKC1
LONRF1ENSG00000154359.855.43160176.85630-1.673809.194006.95330K562EEF2
LONRF1ENSG00000154359.885.99480170.89690-0.990804.571603.38340K562EFTUD2
LONRF1ENSG00000154359.839.2881087.38420-1.153302.578001.60980K562EIF3A
LONRF1ENSG00000154359.8104.21140183.01070-0.812403.233702.10870K562EIF3D
LONRF1ENSG00000154359.8110.76830238.43220-1.106008.250406.88180K562EIF3G
LONRF1ENSG00000154359.8228.95310383.86850-0.745606.390604.98410K562EIF4G2
LONRF1ENSG00000154359.882.44770202.89640-1.299209.185308.15620K562FXR1
LONRF1ENSG00000154359.8378.61810235.501900.684902.488601.82390K562G3BP2
LONRF1ENSG00000154359.8147.82250214.22440-0.535302.420501.36100K562GLRX3
LONRF1ENSG00000154359.860.36540174.68940-1.533009.105008.07340K562HNRNPC
LONRF1ENSG00000154359.879.36740156.04460-0.975304.326502.86100K562HNRNPF
LONRF1ENSG00000154359.8198.49150289.58970-0.544902.570701.38410K562HNRNPK
LONRF1ENSG00000154359.857.05370128.01520-1.165904.374803.18660K562HNRNPM
LONRF1ENSG00000154359.8209.24270304.10850-0.539403.160002.17060K562MATR3
LONRF1ENSG00000154359.8482.60710346.613100.477403.237102.24050K562MBNL1
LONRF1ENSG00000154359.8158.14200225.23420-0.510202.387801.63610K562MTPAP
LONRF1ENSG00000154359.8120.80800240.45140-0.993004.916903.23810K562PABPC1
LONRF1ENSG00000154359.883.13570154.99160-0.898703.597502.64870K562PCBP3
LONRF1ENSG00000154359.867.84840118.88970-0.809202.847702.03440K562POLR2G
LONRF1ENSG00000154359.878.09570166.30150-1.090504.696103.72130K562PRPF8
LONRF1ENSG00000154359.8213.55930296.06220-0.471302.561901.91840K562PTBP1
LONRF1ENSG00000154359.8273.11470418.81650-0.616803.911802.94620K562PUF60
LONRF1ENSG00000154359.8607.47560445.568900.447102.987001.87410K562PUM1
LONRF1ENSG00000154359.8365.07330224.743300.699803.218901.66930K562RAVER1
LONRF1ENSG00000154359.8157.29050283.88540-0.851905.891304.60660K562RBM22
LONRF1ENSG00000154359.878.73250169.42000-1.105604.664803.60190K562RPS19
LONRF1ENSG00000154359.8166.07850245.09010-0.561402.903702.02610K562SF3B4
LONRF1ENSG00000154359.8186.51200293.74080-0.655303.699002.87700K562TARDBP
LONRF1ENSG00000154359.8200.61090283.34650-0.498202.535501.75620K562TIA1
LONRF1ENSG00000154359.8154.35410227.02450-0.556602.570601.72430K562WDR3
LONRF1ENSG00000154359.887.56040236.10490-1.4311012.6491010.99700K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LONRF1 is not available on ENCORE database.





2 RBPs can affect the splicing of LONRF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELONRF1ENSG00000154359.8chr8-1259478012594869125944081259464912595503125955470.058000.000110.01310includedHepG2IGF2BP3
SELONRF1ENSG00000154359.8chr8-1259478012594869125944081259464912595503125956530.180000.000000.00003includedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LONRF1 is not avaliable on ENCORE database.