JMJD4

General Information

Gene Name       : JMJD4
Gene ID             : ENSG00000081692.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: JMJD4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878JMJD4ENSG00000081692.123.337.105.21ENCSR000AEF
HepG2JMJD4ENSG00000081692.1220.366.5913.47ENCSR985KAT
K562JMJD4ENSG00000081692.1219.2014.7916.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for JMJD4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • JMJD4 RNA is bound by 12 proteins.  







eCLIP assay for JMJD4 is not avaliable on ENCORE database.





12 proteins are bound to JMJD4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1227919574227919686-3'-UTR,intron-Distal4.381948.55453HepG2UPF1
chr1227919614227919689-3'-UTR,intron-Distal3.534064.90523HepG2AKAP1
chr1227919794227919905-3'-UTR,intron-Distal4.768286.20043HepG2UPF1
chr1227919686227919740-3'-UTR,intron-Distal4.510245.41597HepG2UPF1
chr1227919615227919693-3'-UTR,intron-Distal3.853615.09764HepG2NKRF
chr1227919106227919169-3'-UTR,intron-Distal4.068173.08342HepG2AKAP1
chr1227919613227919692-3'-UTR,intron-Distal4.209293.31384K562XRN2
chr1227919970227920017-3'-UTR,intron-Distal3.190893.46580HepG2CSTF2T
chr1227922672227922716-CDS,intron-Distal4.780034.35676HepG2PRPF8
chr1227922733227922802-CDS,intron-Distal,intron-Proximal4.037247.12467HepG2DDX3X
chr1227922862227922938-CDS,intron-Distal,intron-Proximal4.255477.57428HepG2DDX3X
chr1227921595227921669-CDS,intron-Distal,intron-Proximal3.720105.30777HepG2PPIG
chr1227920718227920789-CDS,intron-Distal,intron-Proximal6.0699513.26581K562SF3B4
chr1227922309227922369-CDS,intron-Distal,intron-Proximal3.572516.87008HepG2PRPF8
chr1227922725227922848-CDS,intron-Distal,intron-Proximal3.743866.04229K562RBM15
chr1227921126227921175-CDS,intron-Distal3.554934.13746HepG2PPIG
chr1227921060227921141-CDS,intron-Distal,intron-Proximal3.588363.71591HepG2PRPF8
chr1227920256227920326-CDS,intron-Distal3.590124.13746HepG2PPIG
chr1227918690227918763-intron-Distal3.375206.58651HepG2CSTF2T
chr1227922306227922326-intron-Distal,intron-Proximal5.492117.81430K562AQR
chr1227922524227922578-intron-Distal,intron-Proximal3.163463.60305HepG2SF3B4
chr1227921738227921797-intron-Distal,intron-Proximal4.067143.98315HepG2SF3B4
chr1227921037227921085-intron-Distal,intron-Proximal3.846934.34418HepG2RBM22
chr1227922663227922713-intron-Distal4.577076.48405K562AQR
chr1227922328227922352-intron-Distal,intron-Proximal5.442347.81430K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for JMJD4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for JMJD4 is not available on ENCORE database.

  • 99 RBPs can affect the levels of JMJD4.  








The Knockdown/knockout RNA-Seq assay for JMJD4 is not available on ENCORE database.





99 RBPs can affect the gene expression of JMJD4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
JMJD4ENSG00000081692.8417.28000232.802000.841805.543904.26080HepG2ABCF1
JMJD4ENSG00000081692.8303.10610514.57180-0.763508.517807.42420HepG2AUH
JMJD4ENSG00000081692.8232.07170125.113300.891203.996103.29120HepG2BOP1
JMJD4ENSG00000081692.8153.3575080.261900.934003.152602.33260HepG2CNOT7
JMJD4ENSG00000081692.8153.2840085.455200.842903.737502.55040HepG2YBX3
JMJD4ENSG00000081692.8276.42260204.709100.433202.413301.80580HepG2CELF1
JMJD4ENSG00000081692.8334.85380220.062700.605502.612001.88830HepG2DAZAP1
JMJD4ENSG00000081692.8328.55910244.198200.428002.882902.03290HepG2DDX19B
JMJD4ENSG00000081692.8277.88110393.02160-0.500102.516101.91740HepG2DDX3X
JMJD4ENSG00000081692.8393.29300252.627400.638505.065904.19940HepG2DKC1
JMJD4ENSG00000081692.8174.4944083.901801.056306.164605.14820HepG2DNAJC21
JMJD4ENSG00000081692.8153.3814083.173700.882804.633403.82550HepG2DNAJC2
JMJD4ENSG00000081692.8198.57020125.419600.662802.449801.58020HepG2EEF2
JMJD4ENSG00000081692.8171.99050104.560100.717902.834901.71360HepG2EFTUD2
JMJD4ENSG00000081692.8221.61580324.55220-0.550402.673102.09060HepG2EIF2S1
JMJD4ENSG00000081692.8637.03120358.606500.828906.605705.61660HepG2EIF4A3
JMJD4ENSG00000081692.8168.53840253.89200-0.591102.946802.13720HepG2FUBP3
JMJD4ENSG00000081692.8158.5803090.654000.806703.312802.32250HepG2GEMIN5
JMJD4ENSG00000081692.8128.3971067.865200.919803.244901.76550HepG2HNRNPA0
JMJD4ENSG00000081692.8205.0339084.705701.275207.668506.67460HepG2HNRNPA1
JMJD4ENSG00000081692.8189.7398094.223701.009803.432602.66600HepG2HNRNPC
JMJD4ENSG00000081692.8156.3256069.522301.168905.589303.45900HepG2HNRNPD
JMJD4ENSG00000081692.8203.74930340.17160-0.739503.710502.90990HepG2HNRNPK
JMJD4ENSG00000081692.8286.53380200.445200.515403.505002.75430HepG2HNRNPL
JMJD4ENSG00000081692.8221.6581093.600501.2436010.190709.08900HepG2HNRNPU
JMJD4ENSG00000081692.8305.19400217.628400.487802.504901.81510HepG2IGF2BP1
JMJD4ENSG00000081692.8474.53660341.212200.475802.640001.97850HepG2IGF2BP2
JMJD4ENSG00000081692.8192.7601095.609001.011507.025905.91400HepG2ILF2
JMJD4ENSG00000081692.8144.4888078.245700.884803.014201.62480HepG2ILF3
JMJD4ENSG00000081692.8150.5961076.473900.977504.023102.53390HepG2KHDRBS1
JMJD4ENSG00000081692.8321.36740241.354100.413002.526301.54940HepG2KIF1C
JMJD4ENSG00000081692.8355.80740180.224800.981206.375405.10040HepG2LARP4
JMJD4ENSG00000081692.8580.63790362.133100.681005.050804.17330HepG2MAGOH
JMJD4ENSG00000081692.8346.70010218.216400.667805.242104.19800HepG2NOL12
JMJD4ENSG00000081692.8147.5580069.251701.091304.017802.29290HepG2NOLC1
JMJD4ENSG00000081692.8160.7413092.643100.794903.730502.76400HepG2PARN
JMJD4ENSG00000081692.8139.6322084.198200.729702.745701.52140HepG2PKM
JMJD4ENSG00000081692.8301.47440157.427200.937305.703903.11160HepG2PPIG
JMJD4ENSG00000081692.8171.6814083.483401.040106.123705.05900HepG2PPIL4
JMJD4ENSG00000081692.8118.09260202.98580-0.781504.371103.42240HepG2PRPF4
JMJD4ENSG00000081692.8101.11840156.86910-0.633502.251901.52020HepG2PRPF8
JMJD4ENSG00000081692.8403.21320221.157600.866409.486308.52610HepG2PUM1
JMJD4ENSG00000081692.8399.94600220.986000.855807.977006.86400HepG2PUM2
JMJD4ENSG00000081692.8348.22180268.963500.372502.206201.64140HepG2PUS1
JMJD4ENSG00000081692.8129.4226066.165500.967803.170401.34480HepG2RBM14
JMJD4ENSG00000081692.8287.48020493.80980-0.780507.705706.94140HepG2RBM22
JMJD4ENSG00000081692.8449.49620189.796101.243808.424406.68860HepG2RBM27
JMJD4ENSG00000081692.8290.55170154.124600.914602.550601.53260HepG2RCC2
JMJD4ENSG00000081692.8173.0951099.068700.805003.567702.87900HepG2RPS19
JMJD4ENSG00000081692.8310.94100175.010400.829102.449301.69280HepG2RPS2
JMJD4ENSG00000081692.8249.5610080.590901.6306011.522209.93950HepG2RPS3A
JMJD4ENSG00000081692.897.02840155.16310-0.677302.541801.78490HepG2RRP9
JMJD4ENSG00000081692.8164.9466083.352800.984605.466204.61340HepG2SAFB2
JMJD4ENSG00000081692.8154.6584099.434100.637202.146401.31590HepG2SERBP1
JMJD4ENSG00000081692.8341.93740199.780100.775207.348806.28960HepG2SLBP
JMJD4ENSG00000081692.8197.0459097.199301.019406.739405.80390HepG2SMN1
JMJD4ENSG00000081692.8262.64800136.434500.944805.471804.09320HepG2SMNDC1
JMJD4ENSG00000081692.8222.27310557.73260-1.3272023.1224022.04230HepG2SRFBP1
JMJD4ENSG00000081692.8266.59490395.17790-0.567904.095803.54820HepG2SRSF1
JMJD4ENSG00000081692.8318.69560205.705500.631504.781703.99590HepG2SRSF5
JMJD4ENSG00000081692.8223.70550321.49080-0.523203.557002.94860HepG2SRSF9
JMJD4ENSG00000081692.8772.11410484.231000.673009.679908.83490HepG2SSB
JMJD4ENSG00000081692.8405.55020233.927300.793708.567007.57350HepG2SUCLG1
JMJD4ENSG00000081692.8239.88510158.747800.595503.001202.02600HepG2SUPT6H
JMJD4ENSG00000081692.8155.09930355.17740-1.1953012.5688011.50390HepG2TAF15
JMJD4ENSG00000081692.8227.5371090.934301.323109.264708.44390HepG2TIAL1
JMJD4ENSG00000081692.8203.9594091.764401.152208.579007.67240HepG2TRIM56
JMJD4ENSG00000081692.8145.2085080.905700.843703.278801.56710HepG2TROVE2
JMJD4ENSG00000081692.8438.66460203.546701.1077012.2573010.22360HepG2TUFM
JMJD4ENSG00000081692.8128.84130201.10160-0.642302.304701.72620HepG2U2AF1
JMJD4ENSG00000081692.8375.16120215.468300.799904.673303.56690HepG2UBE2L3
JMJD4ENSG00000081692.8136.3607072.185200.917603.432102.20140HepG2XPO5
JMJD4ENSG00000081692.8160.97600224.28350-0.478502.046701.54460K562AGGF1
JMJD4ENSG00000081692.8165.43070233.37510-0.496402.096701.52530K562AKAP8L
JMJD4ENSG00000081692.8359.76130684.23150-0.927403.058402.44810K562AQR
JMJD4ENSG00000081692.8590.31190369.450600.676007.212805.39360K562CPEB4
JMJD4ENSG00000081692.8654.89260382.394500.7761010.841609.64880K562DDX47
JMJD4ENSG00000081692.8432.95510556.71020-0.362702.480101.79230K562EIF2S2
JMJD4ENSG00000081692.8245.61220361.46740-0.557502.347501.40410K562EIF3D
JMJD4ENSG00000081692.8247.36110144.140800.779004.932303.88490K562EIF3G
JMJD4ENSG00000081692.8143.72650227.36740-0.661702.972701.79630K562FKBP4
JMJD4ENSG00000081692.8108.72000178.10100-0.712102.838701.97240K562FMR1
JMJD4ENSG00000081692.8474.85480191.630901.3091017.8891016.45900K562FXR1
JMJD4ENSG00000081692.831.5152066.52750-1.077902.008701.41870K562G3BP2
JMJD4ENSG00000081692.81030.18270741.770200.473803.139602.33630K562GRSF1
JMJD4ENSG00000081692.8111.29170229.68380-1.045302.620901.44580K562HNRNPA2B1
JMJD4ENSG00000081692.8152.34970247.67660-0.701103.339602.42380K562KIF1C
JMJD4ENSG00000081692.882.49410142.69890-0.790602.471301.59330K562KRR1
JMJD4ENSG00000081692.8222.26520154.868900.521102.491401.69120K562MAGOH
JMJD4ENSG00000081692.8323.85390154.541501.067209.778407.93410K562MATR3
JMJD4ENSG00000081692.8115.41820194.47820-0.752702.707101.83500K562NAA15
JMJD4ENSG00000081692.8492.62710333.031600.564703.244501.81590K562NONO
JMJD4ENSG00000081692.8515.58130342.538400.589803.159602.27430K562PPIG
JMJD4ENSG00000081692.8353.97500150.471301.2341013.5749012.15980K562PTBP1
JMJD4ENSG00000081692.897.42150231.45880-1.248407.431906.58790K562PUS1
JMJD4ENSG00000081692.8271.76770144.236700.913803.968702.94480K562RBM22
JMJD4ENSG00000081692.8328.11480151.797101.112004.398302.98430K562NELFE
JMJD4ENSG00000081692.8473.81460334.664300.501502.473101.70170K562RPS19
JMJD4ENSG00000081692.8470.85360247.246100.929209.064707.16980K562SAFB
JMJD4ENSG00000081692.886.76940183.93670-1.084002.671401.49800K562SF1
JMJD4ENSG00000081692.876.29100158.94650-1.059004.327503.09340K562SF3B1
JMJD4ENSG00000081692.866.48420211.11930-1.667005.067003.24310K562SNRNP200
JMJD4ENSG00000081692.8430.63550278.333700.629604.912403.81130K562SYNCRIP
JMJD4ENSG00000081692.8211.30450149.280700.501201.997201.38960K562TARDBP
JMJD4ENSG00000081692.8226.00650144.003600.650203.215702.32400K562TIA1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for JMJD4 is not available on ENCORE database.





1 RBPs can affect the splicing of JMJD4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXEJMJD4ENSG00000081692.8chr1-2279211142279213822279216072279217332279206292279207282279223512279225170.154000.000550.053421includedHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for JMJD4 is not avaliable on ENCORE database.