HCFC1

General Information

Gene Name       : HCFC1
Gene ID             : ENSG00000172534.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: HCFC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HCFC1ENSG00000172534.134.7014.659.68ENCSR000AEF
HepG2HCFC1ENSG00000172534.1341.8016.3529.07ENCSR985KAT
K562HCFC1ENSG00000172534.1349.1330.4439.79ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HCFC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HCFC1 RNA is bound by 40 proteins.  







eCLIP assay for HCFC1 is not avaliable on ENCORE database.





40 proteins are bound to HCFC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX153213664153213727-3'-UTR,intron-Distal5.4178911.80877HepG2UPF1
chrX153214475153214523-3'-UTR,intron-Distal4.0048115.34556K562UPF1
chrX153214449153214466-3'-UTR,intron-Distal4.7261011.27586K562UPF1
chrX153214482153214547-3'-UTR,intron-Distal4.663525.18972HepG2AKAP1
chrX153214199153214243-3'-UTR,intron-Distal4.1659416.91328HepG2PCBP2
chrX153214568153214620-3'-UTR,intron-Distal4.266374.20699HepG2YBX3
chrX153214287153214350-3'-UTR,intron-Distal4.413559.26660HepG2AKAP1
chrX153214648153214717-3'-UTR,intron-Distal4.3327313.07335HepG2PCBP2
chrX153213177153213225-3'-UTR,intron-Distal3.9072627.20283K562PUM2
chrX153213354153213360-3'-UTR,intron-Distal3.161854.08171K562YBX3
chrX153213839153213930-3'-UTR,intron-Distal3.590187.93152HepG2UPF1
chrX153214552153214617-3'-UTR,intron-Distal4.1711418.52178K562UPF1
chrX153214270153214351-3'-UTR,intron-Distal3.3289816.77726HepG2PCBP2
chrX153214138153214166-3'-UTR,intron-Distal3.8483111.02176K562UPF1
chrX153214412153214467-3'-UTR,intron-Distal5.3835411.24187HepG2UPF1
chrX153214273153214350-3'-UTR,intron-Distal3.6723742.78646K562UPF1
chrX153214467153214534-3'-UTR,intron-Distal6.4275921.10731HepG2UPF1
chrX153214284153214348-3'-UTR,intron-Distal3.579154.80505K562PCBP1
chrX153214277153214356-3'-UTR,intron-Distal4.6381116.14270HepG2UPF1
chrX153213827153213926-3'-UTR,intron-Distal3.3077055.08814K562UPF1
chrX153214429153214514-3'-UTR,intron-Distal3.441344.80505K562PCBP1
chrX153213120153213169-3'-UTR,intron-Distal3.697044.02740K562PCBP1
chrX153213772153213811-3'-UTR,intron-Distal3.2693411.69139K562UPF1
chrX153214553153214621-3'-UTR,intron-Distal5.0486516.56794HepG2UPF1
chrX153214566153214620-3'-UTR,intron-Distal3.785224.06757K562UCHL5
chrX153213167153213219-3'-UTR,intron-Distal3.511514.69728HepG2DDX55
chrX153213139153213209-3'-UTR,intron-Distal4.324484.78280HepG2AKAP1
chrX153213225153213294-3'-UTR,intron-Distal3.9345615.22185K562PUM2
chrX153213057153213129-3'-UTR,intron-Distal3.375229.14391K562PABPC4
chrX153214656153214697-3'-UTR,intron-Distal4.621445.41597HepG2UPF1
chrX153236602153236660-5'-UTR,intron-Distal,intron-Proximal4.189098.98329HepG2EIF3H
chrX153237059153237125-5'-UTR,intron-Distal4.689486.93329K562DDX24
chrX153237005153237086-5'-UTR,intron-Distal3.921058.82687K562UCHL5
chrX153237172153237227-5'-UTR,intron-Distal3.228723.84532K562XRCC6
chrX153236275153236420-5'-UTR,CDS,intron-Distal3.5887522.85325HepG2DDX3X
chrX153236777153236810-5'-UTR,intron-Distal3.673569.83130K562FXR2
chrX153236660153236707-5'-UTR,intron-Distal,intron-Proximal3.114345.77812HepG2EIF3H
chrX153236593153236660-5'-UTR,intron-Distal,intron-Proximal3.669234.26355K562XRCC6
chrX153236498153236542-5'-UTR,intron-Distal4.662947.85254K562FMR1
chrX153236408153236498-5'-UTR,intron-Distal3.944257.39596K562CSTF2T
chrX153236604153236664-5'-UTR,intron-Distal,intron-Proximal3.557983.97300HepG2EIF3D
chrX153236588153236640-5'-UTR,intron-Distal,intron-Proximal4.074437.73808K562FMR1
chrX153236752153236803-5'-UTR,intron-Distal5.452809.13992K562FMR1
chrX153236461153236517-5'-UTR,intron-Distal4.2237910.68796HepG2DDX3X
chrX153236754153236795-5'-UTR,intron-Distal3.576538.31998HepG2DDX3X
chrX153236595153236658-5'-UTR,intron-Distal,intron-Proximal5.0815033.00765HepG2DDX3X
chrX153236609153236674-5'-UTR,intron-Distal,intron-Proximal3.248975.81611K562GEMIN5
chrX153236476153236581-5'-UTR,intron-Distal3.4883810.26816K562DDX3X
chrX153237115153237226-5'-UTR,intron-Distal3.4689516.42912K562DDX3X
chrX153236669153236712-5'-UTR,intron-Distal,intron-Proximal3.9234524.74215HepG2DDX3X
chrX153236993153237114-5'-UTR,intron-Distal3.513865.20146HepG2DROSHA
chrX153236580153236712-5'-UTR,intron-Distal,intron-Proximal3.1876118.30194K562FXR2
chrX153237013153237051-5'-UTR,intron-Distal3.704927.94128HepG2DDX3X
chrX153237067153237106-5'-UTR,intron-Distal4.080343.68241HepG2G3BP1
chrX153221834153221860-CDS,intron-Distal3.807313.45072HepG2YBX3
chrX153219655153219696-CDS,intron-Distal,intron-Proximal3.582685.06179K562FMR1
chrX153217575153217685-CDS,intron-Distal,intron-Proximal4.1917112.20650K562EFTUD2
chrX153228688153228727-CDS,intron-Distal4.515216.16300K562FMR1
chrX153229640153229690-CDS,intron-Distal3.769414.45876K562FMR1
chrX153224849153224895-CDS,intron-Distal4.335464.53890K562PCBP1
chrX153222077153222140-CDS,intron-Distal5.909778.93227K562DDX24
chrX153221840153221862-CDS,intron-Distal3.401835.58482K562YBX3
chrX153220120153220176-CDS,intron-Distal4.7392611.76613K562FMR1
chrX153217104153217126-CDS,intron-Distal3.512213.55142K562METAP2
chrX153217120153217140-CDS,intron-Distal4.580634.99898K562FXR2
chrX153219567153219618-CDS,intron-Distal,intron-Proximal3.013565.91320K562RBM15
chrX153230093153230103-CDS,intron-Distal5.100395.90466K562FXR2
chrX153219861153219969-CDS,intron-Distal4.7376821.68634K562FXR2
chrX153228783153228851-CDS,intron-Distal3.236836.23329K562METAP2
chrX153226949153227010-CDS,intron-Distal,intron-Proximal3.732514.70265HepG2AQR
chrX153227619153227674-CDS,intron-Distal,intron-Proximal3.548066.65114HepG2PRPF8
chrX153219898153219928-CDS,intron-Distal4.121714.24447K562FMR1
chrX153227035153227081-CDS,intron-Distal3.469154.31813HepG2G3BP1
chrX153222357153222371-CDS,intron-Distal,intron-Proximal3.348787.29769HepG2PRPF8
chrX153229512153229585-CDS,intron-Distal,intron-Proximal3.9648313.03969HepG2PRPF8
chrX153220778153220826-CDS,intron-Distal3.613236.45270K562METAP2
chrX153225254153225308-CDS,intron-Distal4.124546.36347HepG2PPIG
chrX153225451153225486-CDS,intron-Distal,intron-Proximal5.399348.56325K562FXR2
chrX153219991153220012-CDS,intron-Distal4.619216.83513K562FMR1
chrX153221595153221656-CDS,intron-Distal,intron-Proximal3.8784332.72205HepG2PRPF8
chrX153220813153220888-CDS,intron-Distal3.885316.10061HepG2IGF2BP1
chrX153221692153221753-CDS,intron-Distal5.9377814.82664K562METAP2
chrX153222854153222925-CDS,intron-Distal3.021825.02982HepG2IGF2BP1
chrX153217562153217686-CDS,intron-Distal,intron-Proximal4.8947513.62529K562SF3B4
chrX153219183153219219-CDS,intron-Distal4.602839.24647K562FXR2
chrX153222078153222102-CDS,intron-Distal3.940905.33538K562METAP2
chrX153220114153220166-CDS,intron-Distal3.044103.87595K562RBM15
chrX153217535153217566-CDS,intron-Distal3.784593.52230K562AQR
chrX153220027153220085-CDS,intron-Distal5.7585319.19130K562FXR2
chrX153219994153220027-CDS,intron-Distal5.035689.24647K562FXR2
chrX153223663153223723-CDS,intron-Distal,intron-Proximal4.082407.30031K562AQR
chrX153220013153220161-CDS,intron-Distal3.623175.70495K562FXR1
chrX153221642153221652-CDS,intron-Distal3.358434.30677K562YBX3
chrX153225837153225917-CDS,intron-Distal,intron-Proximal5.8636845.54894K562SF3B4
chrX153222075153222113-CDS,intron-Distal,intron-Proximal3.120223.22545HepG2PPIG
chrX153220774153220842-CDS,intron-Distal3.293157.74098K562RBM15
chrX153228682153228728-CDS,intron-Distal4.441865.59736K562FXR2
chrX153222762153222819-CDS,intron-Distal,intron-Proximal4.5848115.35592K562METAP2
chrX153220012153220042-CDS,intron-Distal4.064599.14187K562FMR1
chrX153220754153220813-CDS,intron-Distal3.214553.84724HepG2IGF2BP1
chrX153219941153219966-CDS,intron-Distal3.432484.93097K562YBX3
chrX153215959153215990-CDS,intron-Distal3.167765.58482K562YBX3
chrX153223977153224026-CDS,intron-Distal,intron-Proximal4.1896911.26073HepG2PRPF8
chrX153219778153219818-CDS,intron-Distal4.7270210.22357K562FXR2
chrX153227025153227096-CDS,intron-Distal3.680934.63912HepG2LIN28B
chrX153216744153216810-CDS,intron-Distal,intron-Proximal4.072516.23016HepG2PRPF8
chrX153217074153217091-CDS,intron-Distal3.622543.37427K562FMR1
chrX153236113153236152-CDS,intron-Distal3.760343.38114HepG2GRWD1
chrX153220960153220997-CDS,intron-Distal,intron-Proximal4.2584512.81671K562SF3B4
chrX153220974153221030-CDS,intron-Distal,intron-Proximal3.808249.04524K562AQR
chrX153217094153217122-CDS,intron-Distal3.515425.89189K562FXR1
chrX153220270153220333-CDS,intron-Distal4.067695.57536HepG2SDAD1
chrX153229517153229585-CDS,intron-Distal,intron-Proximal3.2335210.35976K562PRPF8
chrX153219561153219619-CDS,intron-Distal,intron-Proximal3.239034.37904K562IGF2BP2
chrX153220042153220120-CDS,intron-Distal4.0947510.48141K562FMR1
chrX153230029153230092-CDS,intron-Distal3.734646.63359K562BUD13
chrX153228842153228900-CDS,intron-Distal,intron-Proximal4.150675.47926K562AQR
chrX153223198153223274-CDS,intron-Distal,intron-Proximal4.9171612.58019HepG2PRPF8
chrX153220090153220117-CDS,intron-Distal4.832766.51828K562YBX3
chrX153225400153225487-CDS,intron-Distal,intron-Proximal4.1359510.85038K562PCBP1
chrX153219603153219693-CDS,intron-Distal,intron-Proximal4.523648.14037K562PCBP1
chrX153221579153221653-CDS,intron-Distal,intron-Proximal3.008087.36809K562PRPF8
chrX153225782153225839-CDS,intron-Distal3.703127.69921HepG2PPIG
chrX153223973153224021-CDS,intron-Distal,intron-Proximal5.639739.41643K562AQR
chrX153221772153221797-CDS,intron-Distal3.534248.47737K562YBX3
chrX153220698153220751-CDS,intron-Distal3.722854.98411K562RBM15
chrX153219916153220030-CDS,intron-Distal3.810418.77191HepG2G3BP1
chrX153220629153220659-CDS,intron-Distal5.417168.56325K562FXR2
chrX153225253153225285-CDS,intron-Distal4.378438.92211K562FXR2
chrX153222489153222511-CDS,intron-Distal3.787197.18979K562METAP2
chrX153220688153220754-CDS,intron-Distal3.371024.34898HepG2IGF2BP1
chrX153217139153217193-CDS,intron-Distal,intron-Proximal4.416539.23765K562SF3B4
chrX153219203153219213-CDS,intron-Distal3.408983.80834K562METAP2
chrX153217213153217314-CDS,intron-Distal,intron-Proximal5.132107.02967HepG2PRPF8
chrX153221797153221828-CDS,intron-Distal3.821428.50021K562YBX3
chrX153230078153230108-CDS,intron-Distal4.723965.31712K562METAP2
chrX153222500153222533-CDS,intron-Distal,intron-Proximal5.319796.75320K562AQR
chrX153217108153217159-CDS,intron-Distal,intron-Proximal3.407154.41130K562AQR
chrX153217093153217120-CDS,intron-Distal4.774819.56775K562FMR1
chrX153219890153219974-CDS,intron-Distal3.007033.36482K562FXR1
chrX153216404153216448-CDS,intron-Distal3.621973.18236K562FXR1
chrX153223651153223730-CDS,intron-Distal,intron-Proximal4.171313.59236HepG2AQR
chrX153220266153220337-CDS,intron-Distal4.4527118.50543K562FXR2
chrX153220963153221093-CDS,intron-Distal,intron-Proximal5.069606.90190HepG2AQR
chrX153230028153230066-CDS,intron-Distal,intron-Proximal3.432123.09866HepG2FXR2
chrX153226981153227092-CDS,intron-Distal,intron-Proximal3.052825.86925HepG2PPIG
chrX153222505153222586-CDS,intron-Distal,intron-Proximal4.079276.78984HepG2AQR
chrX153228817153228857-CDS,intron-Distal4.506856.78826K562FXR2
chrX153220594153220629-CDS,intron-Distal4.129688.66431K562FXR2
chrX153219591153219706-CDS,intron-Distal,intron-Proximal3.5022013.99345K562FXR2
chrX153217120153217138-CDS,intron-Distal5.611659.85253K562FMR1
chrX153225833153225923-CDS,intron-Distal,intron-Proximal4.2072516.16745K562SMNDC1
chrX153221597153221645-CDS,intron-Distal,intron-Proximal4.422564.59919HepG2AQR
chrX153220515153220539-CDS,intron-Distal4.171314.15208K562RBM15
chrX153223624153223686-CDS,intron-Distal4.189486.28735K562DDX24
chrX153221686153221768-CDS,intron-Distal3.3622119.62011K562YBX3
chrX153221786153221833-CDS,intron-Distal3.292204.24993HepG2PPIG
chrX153218189153218240-CDS,intron-Distal3.480645.16533K562FMR1
chrX153228874153228927-CDS,intron-Distal,intron-Proximal5.281216.40247K562SF3B4
chrX153225252153225319-CDS,intron-Distal,intron-Proximal3.148929.60340K562YBX3
chrX153220118153220172-CDS,intron-Distal5.2752611.86354K562FXR2
chrX153222840153222916-CDS,intron-Distal3.264124.29687K562IGF2BP2
chrX153216335153216361-CDS,intron-Distal3.313404.74241K562YBX3
chrX153225857153225928-CDS,intron-Distal,intron-Proximal5.162387.19196HepG2SF3B4
chrX153220228153220266-CDS,intron-Distal3.447967.14836K562FXR2
chrX153222854153222911-CDS,intron-Distal4.586728.06387K562METAP2
chrX153220599153220695-CDS,intron-Distal5.5262215.51524K562FMR1
chrX153217916153217991-CDS,intron-Distal,intron-Proximal3.248076.93483HepG2PRPF8
chrX153227013153227086-CDS,intron-Distal3.022626.07808K562UCHL5
chrX153218996153219060-CDS,intron-Distal,intron-Proximal4.539729.10443HepG2PRPF8
chrX153220231153220260-CDS,intron-Distal3.293414.08293K562FMR1
chrX153217155153217222-CDS,intron-Distal,intron-Proximal4.2013910.46991K562EFTUD2
chrX153220629153220677-CDS,intron-Distal3.266836.30979K562RBM15
chrX153223259153223338-CDS,intron-Distal,intron-Proximal3.187377.36517K562DDX24
chrX153229646153229687-CDS,intron-Distal3.878435.62598K562FXR2
chrX153220261153220315-CDS,intron-Distal4.270968.03807K562RBM15
chrX153216272153216312-CDS,intron-Distal3.547497.65255K562YBX3
chrX153220260153220329-CDS,intron-Distal4.9126616.68135K562FMR1
chrX153217581153217635-CDS,intron-Distal,intron-Proximal4.077676.32052K562AQR
chrX153224211153224275-CDS,intron-Distal,intron-Proximal4.024248.08874K562SF3B4
chrX153226946153226995-CDS,intron-Distal,intron-Proximal4.3302110.58560K562AQR
chrX153220191153220233-CDS,intron-Distal5.071168.78366K562RBM15
chrX153220304153220342-CDS,intron-Distal3.537904.86632HepG2G3BP1
chrX153217089153217120-CDS,intron-Distal4.882077.08325K562FXR2
chrX153220370153220406-CDS,intron-Distal3.919676.52856K562FXR2
chrX153222075153222105-CDS,intron-Distal,intron-Proximal3.572426.61971K562YBX3
chrX153220969153221072-CDS,intron-Distal,intron-Proximal3.654119.15230K562SMNDC1
chrX153226932153226998-CDS,intron-Distal,intron-Proximal3.226577.18673HepG2PRPF8
chrX153217122153217142-CDS,intron-Distal4.542906.94876K562FXR1
chrX153228820153228853-CDS,intron-Distal4.151065.82909K562FMR1
chrX153224196153224221-CDS,intron-Distal,intron-Proximal3.353934.63145K562BUD13
chrX153224783153224815-CDS,intron-Distal4.037055.20093K562DDX24
chrX153224806153224886-CDS,intron-Distal4.240574.26679K562GRWD1
chrX153225770153225861-CDS,intron-Distal3.257894.44254K562GRWD1
chrX153229525153229575-intron-Distal,intron-Proximal5.1679511.65116K562AQR
chrX153224669153224726-intron-Distal,intron-Proximal3.559684.06013K562PRPF8
chrX153222721153222765-intron-Distal,intron-Proximal3.731079.70941HepG2PRPF8
chrX153214956153215004-intron-Distal,intron-Proximal5.049854.48002K562AQR
chrX153221016153221077-intron-Distal,intron-Proximal3.642925.74135K562DDX24
chrX153224676153224741-intron-Distal,intron-Proximal3.856067.84941K562EFTUD2
chrX153218899153218939-intron-Distal4.212114.22893K562RBM15
chrX153221003153221110-intron-Distal,intron-Proximal3.262008.81110K562BUD13
chrX153219010153219056-intron-Distal,intron-Proximal4.874885.69951K562AQR
chrX153221631153221642-intron-Distal,intron-Proximal5.1084418.72611K562AQR
chrX153235788153235900-intron-Distal3.186933.19579K562HNRNPK
chrX153231345153231392-intron-Distal3.764933.07008K562NONO
chrX153226925153226965-intron-Distal,intron-Proximal3.208173.85411HepG2RBM22
chrX153217792153217891-intron-Distal,intron-Proximal4.1976214.28605K562EFTUD2
chrX153221600153221631-intron-Distal,intron-Proximal4.1963717.79008K562AQR
chrX153227610153227662-intron-Distal,intron-Proximal5.9383112.46873K562AQR
chrX153235718153235771-intron-Distal3.174353.62708K562CSTF2T
chrX153217904153217965-intron-Distal,intron-Proximal4.062086.80869K562AQR
chrX153221011153221045-intron-Distal,intron-Proximal6.6760335.64458K562SF3B4
chrX153221013153221109-intron-Distal,intron-Proximal3.901379.47481K562RBM15
chrX153222725153222765-intron-Distal,intron-Proximal3.769515.00154HepG2AQR
chrX153228452153228497-intron-Distal3.635684.06013K562PRPF8
chrX153235469153235506-intron-Distal4.166084.61649HepG2CSTF2T
chrX153226915153226946-intron-Distal,intron-Proximal5.188277.28294K562AQR
chrX153219465153219517-intron-Distal,intron-Proximal4.132105.90868HepG2PRPF8
chrX153222327153222357-intron-Distal,intron-Proximal4.303688.77485HepG2PRPF8
chrX153224661153224781-intron-Distal,intron-Proximal5.3956312.37853HepG2EFTUD2
chrX153235932153236044-intron-Distal5.5077015.76558HepG2PCBP2
chrX153224693153224776-intron-Distal,intron-Proximal5.7041210.44569K562AQR
chrX153216942153217012-intron-Distal,intron-Proximal5.899138.30797HepG2SF3A3
chrX153219440153219517-intron-Distal,intron-Proximal4.091778.29266K562AQR
chrX153223440153223473-intron-Distal,intron-Proximal3.933745.64484HepG2PRPF8
chrX153219366153219391-intron-Distal4.169403.81597K562RBM15
chrX153221010153221053-intron-Distal,intron-Proximal4.115239.04968HepG2BUD13
chrX153225233153225252-intron-Distal,intron-Proximal4.603314.65563K562AQR
chrX153216204153216262-intron-Distal,intron-Proximal5.424418.43521K562AQR
chrX153224696153224723-intron-Distal,intron-Proximal3.401643.75245K562BUD13
chrX153235819153235936-intron-Distal4.423544.07750HepG2HNRNPK
chrX153228650153228676-intron-Distal,intron-Proximal4.314046.48405K562AQR
chrX153231603153231660-intron-Distal4.237123.59342K562CSTF2T
chrX153222755153222765-intron-Distal,intron-Proximal6.3231215.90046K562AQR
chrX153229470153229541-intron-Distal,intron-Proximal3.644316.38859K562EFTUD2
chrX153216747153216798-intron-Distal,intron-Proximal5.284597.28294K562AQR
chrX153225204153225233-intron-Distal,intron-Proximal4.892345.17615K562AQR
chrX153235822153235891-intron-Distal5.6212310.17440HepG2DDX59
chrX153225865153225931-intron-Distal,intron-Proximal4.2324218.14109HepG2SF3A3
chrX153228637153228650-intron-Distal,intron-Proximal5.429358.03507K562AQR
chrX153222720153222755-intron-Distal,intron-Proximal5.4939916.94745K562AQR
chrX153227600153227641-intron-Distal,intron-Proximal4.190463.71036HepG2RBM22
chrX153220997153221011-intron-Distal,intron-Proximal7.4154829.19689K562SF3B4
chrX153227662153227673-intron-Distal,intron-Proximal5.424418.43521K562AQR
chrX153217813153217883-intron-Distal,intron-Proximal5.9932013.04469K562SF3B4
chrX153235820153235869-intron-Distal3.975083.14687K562CSTF2T
chrX153221618153221635-intron-Distal,intron-Proximal4.758455.13952K562SF3B4
chrX153235834153235905-intron-Distal4.4814613.11176HepG2PCBP2
chrX153235791153235823-intron-Distal4.121416.53456HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HCFC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HCFC1 is not available on ENCORE database.

  • 114 RBPs can affect the levels of HCFC1.  








The Knockdown/knockout RNA-Seq assay for HCFC1 is not available on ENCORE database.





114 RBPs can affect the gene expression of HCFC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HCFC1ENSG00000172534.9917.879001422.30410-0.631902.643701.59300HepG2AATF
HCFC1ENSG00000172534.92939.561803301.40390-0.167502.092901.54940HepG2ACO1
HCFC1ENSG00000172534.91780.640801208.209600.559402.382501.45470HepG2ADAR
HCFC1ENSG00000172534.93018.762303859.19260-0.354303.866203.08000HepG2AUH
HCFC1ENSG00000172534.94281.283505372.78150-0.327603.327002.67750HepG2BOP1
HCFC1ENSG00000172534.91690.675902847.96720-0.7523011.280509.89410HepG2CALR
HCFC1ENSG00000172534.91843.331301122.521800.715504.305003.34530HepG2CNOT7
HCFC1ENSG00000172534.93748.472504932.36880-0.396004.159503.33250HepG2CPSF6
HCFC1ENSG00000172534.9778.162701457.21990-0.905103.462801.87700HepG2CSTF2T
HCFC1ENSG00000172534.92086.491001837.096600.183602.428901.72810HepG2DAZAP1
HCFC1ENSG00000172534.9990.179601567.01090-0.662303.621802.85420HepG2DDX21
HCFC1ENSG00000172534.91018.594101535.28260-0.591902.762801.85100HepG2DDX24
HCFC1ENSG00000172534.93145.171304051.67330-0.365402.937401.89800HepG2DDX5
HCFC1ENSG00000172534.92662.145903158.58760-0.246703.404602.66350HepG2DKC1
HCFC1ENSG00000172534.91697.742901216.568200.480704.591803.70450HepG2DNAJC21
HCFC1ENSG00000172534.91748.513001205.917800.535903.712702.97740HepG2DNAJC2
HCFC1ENSG00000172534.93348.623902038.929200.715703.167902.18650HepG2EEF2
HCFC1ENSG00000172534.9787.541801444.54180-0.875202.933501.78840HepG2AGO1
HCFC1ENSG00000172534.94801.303803870.249800.310903.432802.12680HepG2EIF2S2
HCFC1ENSG00000172534.93482.229701952.356100.834702.782902.14190HepG2EIF4A3
HCFC1ENSG00000172534.91405.169001812.62410-0.367303.161802.27840HepG2EIF4G1
HCFC1ENSG00000172534.92343.720601736.339200.432704.588603.55710HepG2EIF4G2
HCFC1ENSG00000172534.91024.928101454.56790-0.505102.664401.41770HepG2FKBP4
HCFC1ENSG00000172534.93164.020301971.741500.682203.156402.41790HepG2FXR1
HCFC1ENSG00000172534.92318.272701473.308100.653902.746501.85150HepG2GEMIN5
HCFC1ENSG00000172534.91571.458601228.224300.355402.006301.44620HepG2HNRNPA1
HCFC1ENSG00000172534.91318.666301688.46510-0.356602.597401.68870HepG2HNRNPA2B1
HCFC1ENSG00000172534.93729.024902806.534900.409902.822502.09750HepG2HNRNPF
HCFC1ENSG00000172534.93517.963301853.427200.924406.205205.18870HepG2HNRNPK
HCFC1ENSG00000172534.91918.355601673.378500.197001.925101.35010HepG2HNRNPL
HCFC1ENSG00000172534.93853.851305335.48330-0.469305.348004.50220HepG2HNRNPLL
HCFC1ENSG00000172534.92140.009501357.168300.6569011.7828010.60580HepG2HNRNPU
HCFC1ENSG00000172534.93521.442602763.620800.349504.163503.29030HepG2IGF2BP1
HCFC1ENSG00000172534.91826.849001386.297200.398008.189106.99510HepG2ILF2
HCFC1ENSG00000172534.93370.856801972.438300.773004.086503.29170HepG2MAGOH
HCFC1ENSG00000172534.93221.343504169.28250-0.372104.690103.65800HepG2MSI2
HCFC1ENSG00000172534.93179.388002029.633400.647402.826502.18620HepG2NCBP2
HCFC1ENSG00000172534.92594.544801821.674600.510103.172102.35790HepG2NOL12
HCFC1ENSG00000172534.94431.566002360.095600.908904.000402.28350HepG2NOLC1
HCFC1ENSG00000172534.91528.795901026.397500.574702.873101.96740HepG2PABPC1
HCFC1ENSG00000172534.92355.548101886.788800.320002.952302.32820HepG2PCBP1
HCFC1ENSG00000172534.92015.750501368.558100.558603.666302.24640HepG2PKM
HCFC1ENSG00000172534.92033.004801210.480300.7479017.6154015.86730HepG2PPIL4
HCFC1ENSG00000172534.9945.033401347.49060-0.511803.155302.29810HepG2PRPF8
HCFC1ENSG00000172534.92450.294801739.017200.494602.274101.72580HepG2PUF60
HCFC1ENSG00000172534.93542.028401846.124600.9400055.0192053.07860HepG2PUM1
HCFC1ENSG00000172534.92847.482701844.725700.626204.162603.34850HepG2PUM2
HCFC1ENSG00000172534.92887.161803362.71590-0.220003.275902.61960HepG2PUS1
HCFC1ENSG00000172534.94302.436805518.25200-0.359105.136604.01260HepG2RBM15
HCFC1ENSG00000172534.94411.287501913.277001.205104.362802.01080HepG2RBM17
HCFC1ENSG00000172534.92847.227403703.56900-0.379405.589904.91860HepG2RBM22
HCFC1ENSG00000172534.92392.372701592.221500.587303.428802.31990HepG2RBM27
HCFC1ENSG00000172534.91899.590401292.962600.554903.233302.08590HepG2RCC2
HCFC1ENSG00000172534.92597.900202136.678200.281903.650403.04570HepG2NELFE
HCFC1ENSG00000172534.92412.005501610.547300.582602.827802.20710HepG2RPS19
HCFC1ENSG00000172534.92216.190901208.600300.8746032.4693030.61550HepG2SAFB2
HCFC1ENSG00000172534.94032.179401848.043801.125504.016602.31170HepG2SF1
HCFC1ENSG00000172534.92511.928601998.739300.329605.239704.47040HepG2SF3B4
HCFC1ENSG00000172534.93806.841901794.184201.085203.467801.79630HepG2SFPQ
HCFC1ENSG00000172534.92519.182701667.612900.5951019.2316017.69700HepG2SLBP
HCFC1ENSG00000172534.91969.539701409.401700.4827011.7208010.54010HepG2SMN1
HCFC1ENSG00000172534.93717.563101652.451201.169604.670702.86660HepG2SNRNP200
HCFC1ENSG00000172534.93079.082605875.95770-0.932309.707208.25320HepG2SNRNP70
HCFC1ENSG00000172534.93415.725704182.93790-0.292304.318603.73280HepG2SRFBP1
HCFC1ENSG00000172534.92913.730201717.123400.7628025.9098024.26600HepG2SRSF5
HCFC1ENSG00000172534.93141.784802757.379300.188202.057101.44700HepG2SRSF7
HCFC1ENSG00000172534.93364.573601952.759100.7848034.3867032.61610HepG2SUCLG1
HCFC1ENSG00000172534.91111.789101739.63660-0.645904.219103.40840HepG2SUPV3L1
HCFC1ENSG00000172534.91061.040201875.56730-0.821808.461307.56800HepG2TAF15
HCFC1ENSG00000172534.91648.520001318.627500.322003.228902.69540HepG2TIAL1
HCFC1ENSG00000172534.92138.532101330.538600.6845015.2877014.11190HepG2TRIM56
HCFC1ENSG00000172534.92905.603001699.078600.774005.247904.00530HepG2TUFM
HCFC1ENSG00000172534.96569.636504407.064700.575907.971406.90700HepG2U2AF1
HCFC1ENSG00000172534.96508.732901921.058701.760408.882407.01240HepG2U2AF2
HCFC1ENSG00000172534.92548.331101798.535100.502602.135301.40580HepG2UBE2L3
HCFC1ENSG00000172534.94429.698205001.59850-0.175202.428601.76710HepG2UPF1
HCFC1ENSG00000172534.92562.633803507.19190-0.452709.342208.22890HepG2ZC3H8
HCFC1ENSG00000172534.94198.481805500.79460-0.3898012.7805011.82270HepG2ZNF622
HCFC1ENSG00000172534.99259.716407243.651600.354202.065401.49860K562AKAP8L
HCFC1ENSG00000172534.97655.950506266.775000.288802.920502.31960K562AQR
HCFC1ENSG00000172534.94418.436405534.73580-0.325002.848601.96280K562BOP1
HCFC1ENSG00000172534.96818.234004673.849200.544702.427801.45360K562CCAR1
HCFC1ENSG00000172534.95349.900006767.22970-0.339103.307501.64730K562CEBPZ
HCFC1ENSG00000172534.94769.138905884.73590-0.303203.702602.79720K562CPSF6
HCFC1ENSG00000172534.99310.2641011314.85340-0.281304.014302.83000K562CELF1
HCFC1ENSG00000172534.96248.552803214.779500.958702.772801.49270K562EEF2
HCFC1ENSG00000172534.94838.530303105.457100.639708.419806.74820K562EFTUD2
HCFC1ENSG00000172534.95690.877303323.904800.775709.033807.01540K562EIF3D
HCFC1ENSG00000172534.92101.217701467.926600.517308.711507.30420K562EIF3G
HCFC1ENSG00000172534.94481.921303475.786200.366705.495203.78230K562EIF4B
HCFC1ENSG00000172534.913295.941409201.719500.5309014.7323012.67280K562EIF4G2
HCFC1ENSG00000172534.94087.116003369.026400.278703.716402.18980K562EWSR1
HCFC1ENSG00000172534.92532.387803618.13820-0.514702.786801.65720K562FKBP4
HCFC1ENSG00000172534.94463.865205988.11410-0.423803.622502.63840K562FMR1
HCFC1ENSG00000172534.95227.154104013.772900.381007.452506.52360K562FXR1
HCFC1ENSG00000172534.9392.150401118.00910-1.511508.503207.12060K562G3BP2
HCFC1ENSG00000172534.96266.084407611.67490-0.280602.544601.81720K562GRSF1
HCFC1ENSG00000172534.95243.723504162.998200.332903.413002.76040K562HNRNPC
HCFC1ENSG00000172534.94906.096103718.673500.399703.221601.98140K562HNRNPF
HCFC1ENSG00000172534.94039.308405592.64000-0.469404.527303.31440K562HNRNPM
HCFC1ENSG00000172534.94988.251609219.51490-0.8862011.305609.72330K562HSPD1
HCFC1ENSG00000172534.93491.536201951.262800.839403.555102.33600K562IGF2BP2
HCFC1ENSG00000172534.92768.037201984.277600.480102.438601.34070K562IGF2BP3
HCFC1ENSG00000172534.93374.469004797.86730-0.507704.140202.97660K562KRR1
HCFC1ENSG00000172534.93811.399702049.659400.8948020.8127018.33520K562MAGOH
HCFC1ENSG00000172534.93102.220802045.342900.600907.054305.48810K562MATR3
HCFC1ENSG00000172534.92642.465502004.027300.398904.954303.08890K562PCBP1
HCFC1ENSG00000172534.92948.023601823.499200.692904.340603.11030K562PCBP2
HCFC1ENSG00000172534.95742.624707718.69560-0.426604.899703.75920K562PPIG
HCFC1ENSG00000172534.93845.517103021.995200.347601.982401.34090K562PRPF8
HCFC1ENSG00000172534.93392.106601991.450300.7683016.6618015.09790K562PTBP1
HCFC1ENSG00000172534.97488.0571010679.38700-0.512209.617807.55900K562PUM1
HCFC1ENSG00000172534.98833.962706999.322500.335704.724603.96930K562RBM15
HCFC1ENSG00000172534.93144.479201908.994300.719907.943606.42200K562RBM22
HCFC1ENSG00000172534.93107.023601861.340500.7391010.699407.78880K562RBM34
HCFC1ENSG00000172534.94324.102303407.251800.343703.520302.40380K562RCC2
HCFC1ENSG00000172534.94591.094703175.881800.531606.458704.84990K562RPS3
HCFC1ENSG00000172534.99274.199106497.034100.513302.710601.64130K562SAFB
HCFC1ENSG00000172534.98743.3583010347.19890-0.243003.836002.88450K562SF3A3
HCFC1ENSG00000172534.91909.702301161.412600.717407.793706.31620K562SF3B4
HCFC1ENSG00000172534.98973.665805402.957500.731803.317101.84090K562SFPQ
HCFC1ENSG00000172534.9862.538801347.92100-0.644106.220003.57930K562SND1
HCFC1ENSG00000172534.97817.981405091.579300.618602.473501.33990K562SNRNP200
HCFC1ENSG00000172534.94912.982603229.829400.605007.082905.22280K562SRFBP1
HCFC1ENSG00000172534.93002.352001952.402100.6207010.875009.48150K562SRSF1
HCFC1ENSG00000172534.95460.970903065.601000.8329017.5678014.79810K562SRSF4
HCFC1ENSG00000172534.92826.667401844.186000.616003.478602.27770K562SRSF5
HCFC1ENSG00000172534.91203.288101514.19620-0.331602.692201.43640K562SSB
HCFC1ENSG00000172534.96524.431408922.21940-0.451605.199103.29490K562SSRP1
HCFC1ENSG00000172534.94320.853302924.519200.563002.576201.59860K562SUPV3L1
HCFC1ENSG00000172534.9608.076001097.36390-0.851703.208801.59450K562TAF15
HCFC1ENSG00000172534.94384.418301975.706501.1499013.3450011.58460K562TARDBP
HCFC1ENSG00000172534.93649.411001905.858100.9371024.6067021.97610K562TIA1
HCFC1ENSG00000172534.93094.024301870.809800.725707.843405.75610K562TRA2A
HCFC1ENSG00000172534.95906.878303815.804800.630303.823802.67670K562TRIM56
HCFC1ENSG00000172534.99517.9445011119.12170-0.224302.965002.22010K562UPF1
HCFC1ENSG00000172534.96953.444709777.64220-0.491804.818303.22820K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HCFC1 is not available on ENCORE database.





12 RBPs can affect the splicing of HCFC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHCFC1ENSG00000172534.9chrX-1532264881532266241532256851532258651532269921532270990.061000.000000.00031includedK562PRPF8
SEHCFC1ENSG00000172534.9chrX-153224019153224217153223475153223700153224781153224942-0.134000.000070.00212excludedHepG2U2AF1
SEHCFC1ENSG00000172534.9chrX-153226992153227099153225685153225865153227672153227796-0.126000.000910.01896excludedHepG2U2AF1
SEHCFC1ENSG00000172534.9chrX-1532264881532266241532256851532258651532269921532270990.084000.000000.00000includedK562AQR
SEHCFC1ENSG00000172534.9chrX-153226992153227099153225685153225865153227672153227757-0.070000.000390.00554excludedK562AQR
A3SSHCFC1ENSG00000172534.9chrX-153217964153218541153217964153218409153219057153219221-0.230000.000390.03962shorterK562AGGF1
A3SSHCFC1ENSG00000172534.9chrX-1532179641532185411532179641532184091532190571532192210.257000.000000.00070longerHepG2SF3A3
A3SSHCFC1ENSG00000172534.9chrX-153217964153218541153217964153218409153219057153219221-0.231000.000050.00708shorterK562AKAP8L
A3SSHCFC1ENSG00000172534.9chrX-1532179641532185411532179641532184091532190571532192210.196000.000050.01093longerK562FXR1
A3SSHCFC1ENSG00000172534.9chrX-153217964153218541153217964153218409153219057153219221-0.530000.000000.00189shorterK562TRA2A
A3SSHCFC1ENSG00000172534.9chrX-1532295741532297571532295741532297351532300281532301770.134000.000000.00000longerK562AQR
A3SSHCFC1ENSG00000172534.9chrX-1532276721532278251532276721532277571532286751532288840.076000.000000.00000longerK562AQR
A3SSHCFC1ENSG00000172534.9chrX-1532217311532219491532217311532218621532220751532222140.065000.000000.00000longerK562AQR
A3SSHCFC1ENSG00000172534.9chrX-1532223681532225751532223681532225111532227641532229840.053000.000040.00037longerK562AQR
A3SSHCFC1ENSG00000172534.9chrX-1532240191532242681532240191532242171532247811532249210.096000.000010.00015longerK562AQR
A3SSHCFC1ENSG00000172534.9chrX-1532232321532233921532232321532233371532234751532236000.100000.000000.00000longerK562AQR
A3SSHCFC1ENSG00000172534.9chrX-153217964153218541153217964153218409153219057153219221-0.235000.000010.02661shorterK562SRSF7
A3SSHCFC1ENSG00000172534.9chrX-1532179641532185411532179641532184091532190571532192210.347000.000000.00016longerHepG2U2AF1
A3SSHCFC1ENSG00000172534.9chrX-153217964153218541153217964153218409153219057153219221-0.395000.000270.06332shorterK562TARDBP
A3SSHCFC1ENSG00000172534.9chrX-153217964153218541153217964153218409153219057153219221-0.462000.000000.00326shorterHepG2SRSF7
A3SSHCFC1ENSG00000172534.9chrX-153217964153218541153217964153218409153219057153219221-0.472000.000010.01710shorterK562IGF2BP2
A3SSHCFC1ENSG00000172534.9chrX-153217964153218541153217964153218409153219057153219221-0.457000.000020.00391shorterK562SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HCFC1 is not avaliable on ENCORE database.