DDX54

General Information

Gene Name : DDX54
Gene ID : ENSG00000123064.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: DDX54)

Not Available

Antibody Validation

Bethyl Labs: A301-314A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DDX54	ENSG00000123064.12	3.89	18.96	11.43	ENCSR000AEF
HepG2	DDX54	ENSG00000123064.12	47.50	17.48	32.49	ENCSR985KAT
K562	DDX54	ENSG00000123064.12	56.12	29.83	42.97	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
DDX54	ENCAB899BVE	A301-314A	2					BGKcLV37-13, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
DDX54	K562	CRISPR			DDX54-BGKcLV37-13,DDX54-BGKcLV37-14	NT-BGKcLV37-1,NT-BGKcLV37-2	87.8,72.9	Submitting	ENCORE2
DDX54	HepG2	CRISPR			BGHcLV39-9,BGHcLV39-10	BGHcLV39-1,BGHcLV39-2	NO CLEAR BAND ON THE POSITION,	NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
DDX54	Product_ID: A301-314A Lot_ID: 2 Source: Bethyl Labs Target Name: DDX54-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DDX54 is not avaliable on ENCORE database.

Proteins bound to RNA

DDX54 RNA is bound by 23 proteins.

eCLIP assay for DDX54 is not avaliable on ENCORE database.

23 proteins are bound to DDX54 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	113612649	113612709	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.44339	6.18341	HepG2	PRPF8
chr12	113614690	113614736	-	3'-UTR,CDS,intron-Distal	5.36573	10.40059	K562	FMR1
chr12	113612635	113612796	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.05495	3.66928	K562	PRPF8
chr12	113614691	113614737	-	3'-UTR,CDS,intron-Distal	5.67180	12.30757	K562	FXR2
chr12	113596501	113596543	-	3'-UTR,intron-Distal	4.02332	5.42839	K562	PABPC4
chr12	113612722	113612804	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.27765	7.57443	HepG2	BUD13
chr12	113616782	113616846	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.83826	6.57024	HepG2	AQR
chr12	113616860	113616952	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.61388	7.70650	HepG2	PRPF8
chr12	113616733	113616838	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.04520	12.18707	HepG2	PRPF8
chr12	113617087	113617093	-	3'-UTR,CDS,intron-Distal	3.35609	13.37910	K562	YBX3
chr12	113616877	113616954	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.68434	5.32906	HepG2	AQR
chr12	113596543	113596628	-	3'-UTR,intron-Distal,intron-Proximal	3.84982	3.48680	K562	PABPC4
chr12	113596482	113596489	-	3'-UTR,intron-Distal	3.36191	5.74118	K562	YBX3
chr12	113614647	113614720	-	3'-UTR,CDS,intron-Distal	3.12454	5.21025	HepG2	PPIG
chr12	113612709	113612766	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.90258	8.17589	HepG2	PRPF8
chr12	113617739	113617806	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.15129	4.44431	HepG2	G3BP1
chr12	113617114	113617126	-	3'-UTR,CDS,intron-Distal	3.21119	10.55156	K562	YBX3
chr12	113614603	113614649	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.91654	6.01989	HepG2	PRPF8
chr12	113596564	113596647	-	3'-UTR,intron-Distal,intron-Proximal	3.93805	3.45012	HepG2	UPF1
chr12	113596453	113596482	-	3'-UTR,intron-Distal	3.58546	7.18470	K562	YBX3
chr12	113617093	113617114	-	3'-UTR,CDS,intron-Distal	3.62071	14.57656	K562	YBX3
chr12	113616812	113616926	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.73811	7.21143	HepG2	EFTUD2
chr12	113596568	113596639	-	3'-UTR,intron-Distal,intron-Proximal	5.08063	6.09979	K562	FXR2
chr12	113612891	113612956	-	3'-UTR,CDS,intron-Distal	3.18796	5.77687	HepG2	PPIG
chr12	113616737	113616797	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.56631	7.16774	K562	AQR
chr12	113617743	113617796	-	3'-UTR,CDS,intron-Distal	3.66214	6.98305	HepG2	PPIG
chr12	113618730	113618790	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.60974	9.02617	HepG2	PPIG
chr12	113623212	113623263	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.69521	6.26177	K562	FMR1
chr12	113599098	113599171	-	CDS,intron-Distal	5.04293	6.50203	HepG2	GRWD1
chr12	113599074	113599188	-	CDS,intron-Distal,intron-Proximal	3.49434	17.77500	K562	PUM1
chr12	113610296	113610326	-	CDS,intron-Distal	4.09497	3.67707	K562	METAP2
chr12	113599074	113599178	-	CDS,intron-Distal,intron-Proximal	4.12854	14.93923	K562	UCHL5
chr12	113623140	113623191	-	CDS,intron-Distal	3.07613	4.00731	K562	UCHL5
chr12	113599701	113599797	-	CDS,intron-Distal,intron-Proximal	4.99409	6.88889	HepG2	G3BP1
chr12	113599074	113599138	-	CDS,intron-Distal,intron-Proximal	3.38351	5.70335	K562	METAP2
chr12	113610156	113610206	-	CDS,intron-Distal,intron-Proximal	3.54448	6.00535	K562	METAP2
chr12	113610303	113610365	-	CDS,intron-Distal	3.19883	4.24070	HepG2	GRWD1
chr12	113623082	113623119	-	CDS,intron-Distal	4.60815	5.08593	K562	FXR2
chr12	113618680	113618737	-	CDS,intron-Distal,intron-Proximal	4.41388	3.12843	K562	PRPF8
chr12	113599098	113599170	-	CDS,intron-Distal	4.55475	4.36430	K562	MTPAP
chr12	113618669	113618736	-	CDS,intron-Distal,intron-Proximal	6.07707	13.68711	K562	AQR
chr12	113601047	113601070	-	CDS,intron-Distal	3.58181	3.69481	K562	UCHL5
chr12	113599104	113599183	-	CDS,intron-Distal	3.62404	8.63117	K562	ZNF622
chr12	113600936	113600985	-	CDS,intron-Distal,intron-Proximal	5.07265	7.69727	K562	UCHL5
chr12	113600740	113600791	-	CDS,intron-Distal	4.70419	5.71225	HepG2	G3BP1
chr12	113601017	113601077	-	CDS,intron-Distal	3.53790	3.77614	HepG2	G3BP1
chr12	113618739	113618784	-	CDS,intron-Distal,intron-Proximal	3.34904	3.86052	K562	YBX3
chr12	113600761	113600834	-	CDS,intron-Distal	3.96568	9.16086	K562	UCHL5
chr12	113610105	113610162	-	CDS,intron-Distal,intron-Proximal	5.49211	7.81430	K562	AQR
chr12	113607676	113607709	-	CDS,intron-Distal	4.67599	5.67147	K562	METAP2
chr12	113618690	113618755	-	CDS,intron-Distal,intron-Proximal	4.90904	4.02817	HepG2	PRPF8
chr12	113601010	113601068	-	CDS,intron-Distal	3.32850	7.15565	HepG2	BUD13
chr12	113601040	113601075	-	CDS,intron-Distal	3.43684	3.99908	K562	BUD13
chr12	113596727	113596810	-	CDS,intron-Distal	3.23160	4.82082	K562	PUM1
chr12	113599697	113599800	-	CDS,intron-Distal,intron-Proximal	3.21070	7.71173	K562	UCHL5
chr12	113596859	113596919	-	CDS,intron-Distal	4.15710	7.31709	K562	PUM1
chr12	113596826	113596917	-	CDS,intron-Distal	3.59862	9.14462	K562	ZNF800
chr12	113599071	113599190	-	CDS,intron-Distal,intron-Proximal	3.24277	18.77833	K562	ZNF800
chr12	113600980	113600999	-	CDS,intron-Distal	3.95716	3.28461	K562	BUD13
chr12	113596878	113596919	-	CDS,intron-Distal	4.51221	4.32860	K562	METAP2
chr12	113599708	113599800	-	CDS,intron-Distal,intron-Proximal	4.65330	3.42472	HepG2	FXR2
chr12	113601036	113601074	-	CDS,intron-Distal	3.93684	5.08507	K562	ZNF622
chr12	113596849	113596914	-	CDS,intron-Distal	3.80211	7.05173	K562	ZNF622
chr12	113600834	113600849	-	CDS,intron-Distal,intron-Proximal	3.55206	3.95937	K562	UCHL5
chr12	113618668	113618742	-	CDS,intron-Distal,intron-Proximal	4.58352	5.32906	HepG2	AQR
chr12	113600995	113601066	-	CDS,intron-Distal	3.77874	6.42089	K562	FXR2
chr12	113617812	113617861	-	intron-Distal,intron-Proximal	4.02156	3.56713	HepG2	SF3B4
chr12	113600477	113600581	-	intron-Distal,intron-Proximal	3.97017	3.56210	K562	EIF4G2
chr12	113600477	113600619	-	intron-Distal,intron-Proximal	4.68094	5.79092	K562	TARDBP
chr12	113612400	113612445	-	intron-Distal,intron-Proximal	4.70902	4.35676	HepG2	PRPF8
chr12	113617849	113617952	-	intron-Distal,intron-Proximal	3.76302	3.06150	K562	KHSRP
chr12	113614744	113614791	-	intron-Distal,intron-Proximal	3.94827	3.31322	HepG2	SF3B4
chr12	113601759	113601872	-	intron-Distal,intron-Proximal	5.04985	6.22530	K562	AQR
chr12	113599486	113599593	-	intron-Distal	4.75319	4.65580	K562	GTF2F1
chr12	113600391	113600477	-	intron-Distal,intron-Proximal	4.43317	7.66106	K562	EIF4G2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for DDX54 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DDX54 is not available on ENCORE database.
108 RBPs can affect the levels of DDX54.

The Knockdown/knockout RNA-Seq assay for DDX54 is not available on ENCORE database.

108 RBPs can affect the gene expression of DDX54 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DDX54	ENSG00000123064.8	378.40120	602.99320	-0.67220	3.65880	2.43490	HepG2	AATF
DDX54	ENSG00000123064.8	988.41470	1348.70720	-0.44840	6.65950	5.52210	HepG2	AKAP8L
DDX54	ENSG00000123064.8	1274.37620	1954.66250	-0.61710	11.21170	9.98700	HepG2	AUH
DDX54	ENSG00000123064.8	1306.40720	1740.20700	-0.41370	3.94850	3.24620	HepG2	BOP1
DDX54	ENSG00000123064.8	1206.36780	1510.36210	-0.32420	2.73750	1.51250	HepG2	BUD13
DDX54	ENSG00000123064.8	715.76190	1038.37480	-0.53680	5.88490	4.81550	HepG2	CALR
DDX54	ENSG00000123064.8	655.13810	486.79560	0.42840	2.23870	1.32480	HepG2	YBX3
DDX54	ENSG00000123064.8	954.19230	759.83310	0.32850	3.17450	2.49580	HepG2	CELF1
DDX54	ENSG00000123064.8	963.05400	816.94510	0.23730	1.97180	1.33000	HepG2	DAZAP1
DDX54	ENSG00000123064.8	421.14560	650.90650	-0.62810	3.43950	2.41540	HepG2	DDX24
DDX54	ENSG00000123064.8	1219.56990	1814.17330	-0.57290	2.99470	1.97940	HepG2	DDX59
DDX54	ENSG00000123064.8	730.14380	473.79330	0.62380	9.45040	8.33110	HepG2	DNAJC2
DDX54	ENSG00000123064.8	280.30730	612.44390	-1.12760	4.56280	3.13110	HepG2	AGO1
DDX54	ENSG00000123064.8	1360.59650	2244.34390	-0.72210	17.83570	16.52770	HepG2	ETF1
DDX54	ENSG00000123064.8	288.59760	633.55840	-1.13440	8.69770	6.88770	HepG2	FASTKD2
DDX54	ENSG00000123064.8	983.97820	1199.89090	-0.28620	2.12030	1.42460	HepG2	FUBP3
DDX54	ENSG00000123064.8	569.93510	1182.99610	-1.05360	2.70440	2.04600	HepG2	G3BP1
DDX54	ENSG00000123064.8	871.03590	480.62470	0.85770	4.82720	2.97390	HepG2	HNRNPA0
DDX54	ENSG00000123064.8	481.90240	750.82590	-0.63970	8.01740	6.57460	HepG2	HNRNPA2B1
DDX54	ENSG00000123064.8	1771.45520	1199.38140	0.56250	1.97970	1.38180	HepG2	HNRNPK
DDX54	ENSG00000123064.8	1159.14370	744.15560	0.63930	13.38980	12.00980	HepG2	HNRNPL
DDX54	ENSG00000123064.8	1103.89920	1728.17520	-0.64660	7.48500	6.50820	HepG2	HNRNPLL
DDX54	ENSG00000123064.8	887.01380	533.20340	0.73420	7.82490	6.84420	HepG2	HNRNPU
DDX54	ENSG00000123064.8	761.73070	544.64650	0.48390	6.39670	5.32710	HepG2	ILF2
DDX54	ENSG00000123064.8	1859.40490	1283.35160	0.53480	1.92600	1.39510	HepG2	MATR3
DDX54	ENSG00000123064.8	1201.40260	1647.46480	-0.45550	5.01800	3.95350	HepG2	MSI2
DDX54	ENSG00000123064.8	1098.96900	1762.69580	-0.68160	4.84060	3.53520	HepG2	MTPAP
DDX54	ENSG00000123064.8	971.76050	538.10070	0.85260	6.34970	4.18560	HepG2	NOLC1
DDX54	ENSG00000123064.8	1520.21830	579.71180	1.39080	3.24130	2.05080	HepG2	NONO
DDX54	ENSG00000123064.8	1216.19340	1532.41820	-0.33340	2.51640	1.80170	HepG2	NSUN2
DDX54	ENSG00000123064.8	966.65990	475.57160	1.02320	16.47700	14.76760	HepG2	PPIL4
DDX54	ENSG00000123064.8	837.34190	1382.30660	-0.72320	15.35770	13.76990	HepG2	PRPF4
DDX54	ENSG00000123064.8	1105.92830	1359.16370	-0.29750	2.80060	2.25010	HepG2	PTBP1
DDX54	ENSG00000123064.8	1158.86110	773.31360	0.58350	6.79960	5.92040	HepG2	PUF60
DDX54	ENSG00000123064.8	1583.54940	820.92670	0.94770	34.18870	32.57780	HepG2	PUM1
DDX54	ENSG00000123064.8	1304.38540	820.31450	0.66900	2.25650	1.64840	HepG2	PUM2
DDX54	ENSG00000123064.8	1148.18640	1367.44510	-0.25210	2.43860	1.85050	HepG2	PUS1
DDX54	ENSG00000123064.8	991.95300	1471.86980	-0.56930	3.95040	3.22180	HepG2	QKI
DDX54	ENSG00000123064.8	1654.39960	2039.41420	-0.30180	3.09470	2.19250	HepG2	RBM15
DDX54	ENSG00000123064.8	1287.05600	1875.82910	-0.54350	9.24640	8.42540	HepG2	RBM22
DDX54	ENSG00000123064.8	832.21460	1335.86860	-0.68280	3.88510	3.09690	HepG2	RBM25
DDX54	ENSG00000123064.8	1102.51020	615.83900	0.84010	4.64410	3.33760	HepG2	RBM27
DDX54	ENSG00000123064.8	925.80670	500.09280	0.88840	2.85010	1.77240	HepG2	RCC2
DDX54	ENSG00000123064.8	1093.67550	1512.56490	-0.46780	6.91870	6.13130	HepG2	NELFE
DDX54	ENSG00000123064.8	816.46920	1208.43550	-0.56570	3.92430	3.13420	HepG2	RPLP0
DDX54	ENSG00000123064.8	981.48990	759.91130	0.36900	2.03930	1.50440	HepG2	RPS19
DDX54	ENSG00000123064.8	943.36760	474.83050	0.99030	23.10900	21.49000	HepG2	SAFB2
DDX54	ENSG00000123064.8	963.11310	537.26350	0.84200	3.36880	1.93220	HepG2	SART3
DDX54	ENSG00000123064.8	1391.02290	1710.50410	-0.29830	2.19660	1.56300	HepG2	SF3B1
DDX54	ENSG00000123064.8	1171.87200	1414.94870	-0.27190	2.69880	2.11380	HepG2	SF3B4
DDX54	ENSG00000123064.8	1253.78360	741.52850	0.75760	6.12660	5.14770	HepG2	SLBP
DDX54	ENSG00000123064.8	831.32930	553.71460	0.58620	9.15800	8.09590	HepG2	SMN1
DDX54	ENSG00000123064.8	1135.30930	607.35770	0.90240	4.56900	3.31240	HepG2	SMNDC1
DDX54	ENSG00000123064.8	904.67570	1903.25290	-1.07300	10.94330	9.40090	HepG2	SNRNP70
DDX54	ENSG00000123064.8	1359.44330	2118.63210	-0.64010	14.28350	13.38100	HepG2	SRFBP1
DDX54	ENSG00000123064.8	992.80520	1476.94750	-0.57300	10.28220	9.49870	HepG2	SRSF1
DDX54	ENSG00000123064.8	1191.94120	763.55870	0.64240	11.87170	10.70260	HepG2	SRSF5
DDX54	ENSG00000123064.8	769.93630	1201.61630	-0.64220	12.24540	11.23000	HepG2	SRSF9
DDX54	ENSG00000123064.8	1079.06030	1839.39070	-0.76950	16.39310	15.36090	HepG2	SSB
DDX54	ENSG00000123064.8	1527.57540	868.35590	0.81480	23.31720	21.79770	HepG2	SUCLG1
DDX54	ENSG00000123064.8	787.17780	1286.07730	-0.70820	4.20750	2.56580	HepG2	SUGP2
DDX54	ENSG00000123064.8	213.51240	627.69070	-1.55570	3.23200	2.50820	HepG2	SUPV3L1
DDX54	ENSG00000123064.8	616.53590	1327.66950	-1.10660	15.05330	13.90140	HepG2	TAF15
DDX54	ENSG00000123064.8	1157.36010	1684.65610	-0.54160	5.94030	4.93590	HepG2	TARDBP
DDX54	ENSG00000123064.8	857.14870	1219.80790	-0.50900	2.09120	1.36170	HepG2	TIA1
DDX54	ENSG00000123064.8	1123.13430	522.74260	1.10330	29.95120	28.33750	HepG2	TRIM56
DDX54	ENSG00000123064.8	1291.42960	755.52750	0.77330	5.82940	4.49940	HepG2	TUFM
DDX54	ENSG00000123064.8	1543.07710	799.73550	0.94810	2.52820	1.72990	HepG2	UBE2L3
DDX54	ENSG00000123064.8	1364.46980	1718.91370	-0.33320	4.81160	3.93220	HepG2	UPF1
DDX54	ENSG00000123064.8	704.07310	1364.10570	-0.95420	26.02410	24.34470	HepG2	ZC3H8
DDX54	ENSG00000123064.8	1365.29720	1890.47340	-0.46950	10.88550	9.97780	HepG2	ZNF622
DDX54	ENSG00000123064.8	3466.64130	2397.56680	0.53190	9.72490	8.74330	K562	AGGF1
DDX54	ENSG00000123064.8	3279.15840	2634.77790	0.31550	3.24970	2.16310	K562	AKAP8
DDX54	ENSG00000123064.8	3599.60760	2879.19060	0.32210	2.81010	1.56260	K562	APOBEC3C
DDX54	ENSG00000123064.8	1670.73020	2417.64480	-0.53310	5.57580	4.79300	K562	AQR
DDX54	ENSG00000123064.8	3191.74870	2617.77660	0.28590	2.89870	1.96520	K562	ATP5C1
DDX54	ENSG00000123064.8	1466.09950	1041.42240	0.49330	2.62010	1.35130	K562	BCCIP
DDX54	ENSG00000123064.8	1432.72320	1006.62730	0.50910	2.35120	1.46860	K562	BCLAF1
DDX54	ENSG00000123064.8	1083.18600	1476.88010	-0.44730	3.88500	2.85030	K562	BOP1
DDX54	ENSG00000123064.8	1657.76670	2085.42350	-0.33110	3.44610	1.74050	K562	CEBPZ
DDX54	ENSG00000123064.8	1104.70430	732.61940	0.59240	3.06210	1.70740	K562	CIRBP
DDX54	ENSG00000123064.8	1241.66590	1570.31720	-0.33880	3.28610	2.42920	K562	CPSF6
DDX54	ENSG00000123064.8	1283.40040	763.67750	0.74880	4.14450	2.81360	K562	CSTF2
DDX54	ENSG00000123064.8	3142.18950	4013.17500	-0.35300	3.87130	2.70640	K562	CELF1
DDX54	ENSG00000123064.8	3283.52420	2684.28470	0.29060	2.65730	1.80310	K562	DKC1
DDX54	ENSG00000123064.8	779.72480	474.24720	0.71720	9.47390	8.00180	K562	EIF3G
DDX54	ENSG00000123064.8	1297.66420	803.19810	0.69200	3.66150	1.44550	K562	EIF3H
DDX54	ENSG00000123064.8	1642.08820	1277.09710	0.36260	4.50100	2.78930	K562	EWSR1
DDX54	ENSG00000123064.8	958.93480	1597.81870	-0.73660	10.04330	8.36510	K562	FMR1
DDX54	ENSG00000123064.8	1900.81370	1521.51660	0.32100	3.99540	3.28780	K562	FXR1
DDX54	ENSG00000123064.8	127.44500	347.12670	-1.44560	2.52220	1.85260	K562	G3BP2
DDX54	ENSG00000123064.8	946.67960	1507.17500	-0.67090	6.06120	5.21100	K562	HNRNPC
DDX54	ENSG00000123064.8	1417.40570	683.95210	1.05120	3.37920	2.20220	K562	IGF2BP2
DDX54	ENSG00000123064.8	1078.01430	695.51220	0.63210	4.68810	3.05250	K562	IGF2BP3
DDX54	ENSG00000123064.8	820.32150	1280.22910	-0.64210	4.90680	3.62050	K562	KRR1
DDX54	ENSG00000123064.8	994.82140	1460.79800	-0.55420	3.84090	2.15410	K562	LARP7
DDX54	ENSG00000123064.8	1310.81080	718.41170	0.86750	9.56350	7.94190	K562	MAGOH
DDX54	ENSG00000123064.8	1130.28850	716.89420	0.65680	7.06670	5.49790	K562	MATR3
DDX54	ENSG00000123064.8	3961.58900	2965.84190	0.41750	5.35870	4.00840	K562	MBNL1
DDX54	ENSG00000123064.8	2776.39710	3478.02590	-0.32510	3.28720	2.05050	K562	MSI2
DDX54	ENSG00000123064.8	2619.73720	3111.77830	-0.24830	3.51760	2.61060	K562	MTPAP
DDX54	ENSG00000123064.8	1561.22790	928.34290	0.74990	2.62270	1.37630	K562	NONO
DDX54	ENSG00000123064.8	3002.71360	3457.42330	-0.20340	3.80110	2.94180	K562	NSUN2
DDX54	ENSG00000123064.8	2170.12730	3269.45470	-0.59130	3.40800	2.01900	K562	PABPC1
DDX54	ENSG00000123064.8	1057.09320	702.43180	0.58960	3.61960	2.06910	K562	PCBP1
DDX54	ENSG00000123064.8	1353.83720	1862.32520	-0.46010	2.30950	1.57820	K562	POLR2G
DDX54	ENSG00000123064.8	1392.57330	698.01150	0.99630	20.46000	18.72830	K562	PTBP1
DDX54	ENSG00000123064.8	2776.94790	3787.68220	-0.44780	5.06580	3.58930	K562	PUM1
DDX54	ENSG00000123064.8	3507.00580	2473.80950	0.50340	6.60850	5.81120	K562	PUS1
DDX54	ENSG00000123064.8	2965.66310	2410.66710	0.29880	2.94820	2.33960	K562	RBM15
DDX54	ENSG00000123064.8	1074.57190	669.09380	0.68340	7.84960	6.33980	K562	RBM22
DDX54	ENSG00000123064.8	2105.87040	3035.04220	-0.52730	3.23570	1.51330	K562	RPS3A
DDX54	ENSG00000123064.8	2445.15750	3411.65670	-0.48050	10.05540	8.57110	K562	SF3A3
DDX54	ENSG00000123064.8	980.73860	1425.92040	-0.54000	4.54220	3.28030	K562	SF3B1
DDX54	ENSG00000123064.8	278.38420	435.47290	-0.64550	3.09590	1.39960	K562	SND1
DDX54	ENSG00000123064.8	2747.03640	3495.32160	-0.34750	7.98180	6.48760	K562	SRPK2
DDX54	ENSG00000123064.8	1578.25910	684.32830	1.20550	9.14340	7.86770	K562	SRSF1
DDX54	ENSG00000123064.8	1391.65790	804.32170	0.79090	10.99020	8.76520	K562	SRSF4
DDX54	ENSG00000123064.8	1044.50450	646.40630	0.69220	7.38310	5.56440	K562	SRSF5
DDX54	ENSG00000123064.8	1769.85960	2493.74840	-0.49470	5.46840	3.51700	K562	SSRP1
DDX54	ENSG00000123064.8	1369.55810	692.48930	0.98370	12.31540	10.63460	K562	TARDBP
DDX54	ENSG00000123064.8	1472.71930	668.00930	1.14040	22.46080	19.98740	K562	TIA1
DDX54	ENSG00000123064.8	1268.69600	655.74200	0.95200	5.30280	3.68580	K562	TRA2A
DDX54	ENSG00000123064.8	1925.34640	1381.52820	0.47880	3.89750	2.73660	K562	TRIM56
DDX54	ENSG00000123064.8	2894.72880	3665.98250	-0.34080	6.86600	5.79090	K562	UPF1
DDX54	ENSG00000123064.8	2447.73550	3136.86010	-0.35790	4.06910	3.00140	K562	WDR3
DDX54	ENSG00000123064.8	2717.55740	3262.00770	-0.26340	4.47600	3.41860	K562	WDR43
DDX54	ENSG00000123064.8	2164.01750	2723.56870	-0.33180	3.13960	2.21360	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DDX54 is not available on ENCORE database.

2 RBPs can affect the splicing of DDX54 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
MXE	DDX54	ENSG00000123064.8	chr12	-	113600936	113601079	113601871	113602090	113600736	113600850	113603448	113603522	0.12300	0.00001	0.00221	1included	HepG2	DDX59
MXE	DDX54	ENSG00000123064.8	chr12	-	113600936	113601079	113601871	113602090	113600736	113600850	113603448	113603522	-0.13500	0.00060	0.09481	2included	K562	GEMIN5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DDX54

General Information

Functions

Localization

Domains (AlphaFold: DDX54)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DDX54 is not avaliable on ENCORE database.

23 proteins are bound to DDX54 RNA:

eCLIP assay for DDX54 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DDX54 is not available on ENCORE database.

108 RBPs can affect the gene expression of DDX54 :

The Knockdown/knockout RNA-Seq assay for DDX54 is not available on ENCORE database.

2 RBPs can affect the splicing of DDX54 :

The Knockdown/knockout RNA-Seq assay for DDX54 is not avaliable on ENCORE database.