CNOT3

General Information

Gene Name       : CNOT3
Gene ID             : ENSG00000088038.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: CNOT3)


Antibody Validation

 View validation images for all CNOT3 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNOT3ENSG00000088038.1821.0330.6825.86ENCSR000AEF
HepG2CNOT3ENSG00000088038.1838.8431.1535.00ENCSR985KAT
K562CNOT3ENSG00000088038.1845.7837.9841.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
CNOT313300S1Submitted, ENCORE2BGHcLV43-9, Submitted, ENCORE2BGKcLV42-17, Submitted, ENCORE2
CNOT3ENCAB380RWNA302-156A1Released, ENCODE4BGHcLV43-9, Submitted, ENCORE2
CNOT340608S1Submitted, ENCORE2BGHcLV43-9, Submitted, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
CNOT3K562CRISPRBGKcLV28-29,BGKcLV28-30BGKcLV28-1,BGKcLV28-230.7,29.6NotSatisfiedENCODE4
CNOT3K562CRISPRBGKcLV35-11,BGKcLV35-12BGKcLV35-1,BGKcLV35-2no clear band on the position,NotSatisfiedENCORE2
CNOT3K562CRISPRCNOT3-BGKcLV42-17,CNOT3-BGKcLV42-18NT-BGKcLV42-1,NT-BGKcLV42-284.1,86.8SequencedENCORE2
CNOT3HepG2CRISPRBGHcLV29-29,BGHcLV29-30BGHcLV29-1,BGHcLV29-2no clear band,NotSatisfiedENCODE4
CNOT3HepG2CRISPRBGHcLV36-13,BGHcLV36-14BGHcLV36-1,BGHcLV36-2NO CLEAR BAND ON THE POSITION,NotSatisfiedENCORE2
CNOT3HepG2CRISPRCNOT3-BGHcLV43-9,CNOT3-BGHcLV43-10NT-BGHcLV43-1,NT-BGHcLV43-276.3,75.1SequencedENCORE2
CNOT3293TshRNABG293LV05-13,BG293LV05-14BG293LV05-1,BG293LV05-2NotSatisfiedENCORE2
CNOT3293TshRNABG293LV05-15,BG293LV05-16BG293LV05-1,BG293LV05-2NotSatisfiedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
CNOT3Product_ID: A302-156A
Lot_ID: 1
Source: Bethyl Labs
Target Name: CNOT3-human		 Bethyl_A302-156A_1_CNOT3.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the CNOT3 specific antibody, A302-156A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CNOT3-specific antibody, A302-156A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
CNOT3Product_ID: 13300S
Lot_ID: 1
Source: Cell Signaling Technology
Target Name: CNOT3-human		 CNOT3-HEPG2-CRISPR-13300S.png<br>Caption: Western blot following CRISPR against CNOT3 in HepG2 whole cell lysate using CNOT3 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CNOT3. CNOT3 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
 CST_13300S_1_CNOT3.png<br>Caption: IP-WB analysis of 13300S whole cell lysate using the CNOT3 specific antibody, 13300S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CNOT3-specific antibody, 13300S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
 CNOT3-K562-CRISPR-13300S.png<br>Caption: Western blot following CRISPR against CNOT3 in K562 whole cell lysate using CNOT3 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CNOT3. CNOT3 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
CNOT3Product_ID: 40608S
Lot_ID: 1
Source: Cell Signaling Technology
Target Name: CNOT3-human		 CST_40608S_1_CNOT3.png<br>Caption: IP-WB analysis of 40608S whole cell lysate using the CNOT3 specific antibody, 40608S. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CNOT3-specific antibody, 40608S. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








RNA Targets

  • eCLIP assay for CNOT3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNOT3 RNA is bound by 38 proteins.  







eCLIP assay for CNOT3 is not avaliable on ENCORE database.





38 proteins are bound to CNOT3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr195465745654657487+3'-UTR,CDS3.9447010.81363K562YBX3
chr195465898054659072+3'-UTR,CDS,intron-Proximal3.3444411.10125K562SF3B4
chr195465673054656774+3'-UTR,CDS,intron-Proximal4.659954.28193HepG2AQR
chr195465757654657585+3'-UTR,CDS,intron-Proximal3.004285.89918HepG2PRPF8
chr195465917854659287+3'-UTR4.4387619.97542HepG2RBFOX2
chr195465897854659082+3'-UTR,CDS,intron-Proximal4.826245.32906HepG2AQR
chr195465773354657845+3'-UTR,CDS,intron-Distal4.485604.47904K562HNRNPK
chr195465785354657902+3'-UTR,intron-Distal4.117853.81597K562RBM15
chr195465745054657456+3'-UTR,CDS,intron-Proximal3.625318.04783K562YBX3
chr195464926154649356+3'-UTR,CDS,intron-Proximal4.104437.26476HepG2AQR
chr195465673454656780+3'-UTR,CDS,intron-Proximal3.718906.18341HepG2PRPF8
chr195464934154649397+3'-UTR,5'-UTR,CDS3.030333.26789K562YBX3
chr195465591454655988+3'-UTR,CDS,intron-Proximal5.919429.44792K562SF3B4
chr195464934754649398+3'-UTR,5'-UTR,CDS3.255785.71803K562UCHL5
chr195464934254649414+3'-UTR,5'-UTR,CDS3.630085.58683HepG2GRWD1
chr195465752754657567+3'-UTR,CDS3.457336.14048K562ZNF622
chr195465671454656737+3'-UTR,CDS,intron-Proximal3.9584410.81363K562YBX3
chr195465686354656972+3'-UTR,CDS,intron-Distal,intron-Proximal3.693125.34559K562HNRNPK
chr195465916654659241+3'-UTR3.897863.46058HepG2PABPN1
chr195465601554656072+3'-UTR,CDS,intron-Proximal3.509894.22917HepG2PPIG
chr195465757654657609+3'-UTR,CDS,intron-Proximal3.8582313.40055K562AQR
chr195465673054656769+3'-UTR,CDS,intron-Proximal3.4772411.79768K562AQR
chr195465668854656756+3'-UTR,CDS,intron-Proximal4.402244.28220HepG2GRWD1
chr195465917954659270+3'-UTR4.4969914.00132K562RBFOX2
chr195465774554657822+3'-UTR,CDS,intron-Distal4.502315.87141HepG2HNRNPK
chr195465902654659070+3'-UTR,CDS,intron-Proximal4.667368.01338K562AQR
chr195465684854656928+3'-UTR,CDS,intron-Distal,intron-Proximal4.001897.31862HepG2HNRNPK
chr195464805454648125+5'-UTR,CDS,intron-Proximal4.938586.92731HepG2PRPF8
chr195465234154652404+5'-UTR,CDS,intron-Proximal5.3936711.28741K562BUD13
chr195464666754646739+5'-UTR,CDS4.248217.88406K562DDX24
chr195464739454647445+5'-UTR,CDS,intron-Proximal3.700266.77066K562UCHL5
chr195464553354645614+5'-UTR,intron-Distal3.728789.08489HepG2SUGP2
chr195464717954647211+5'-UTR,CDS3.496635.23038K562ZNF622
chr195464780254647846+5'-UTR,CDS3.215043.85127HepG2GRWD1
chr195465340554653473+5'-UTR,CDS3.389774.02291HepG2GRWD1
chr195465230254652363+5'-UTR,CDS,intron-Proximal3.961818.02891K562EFTUD2
chr195464516454645202+5'-UTR,intron-Distal4.599396.32237HepG2SUGP2
chr195465340254653489+5'-UTR,CDS3.149843.67576K562IGF2BP2
chr195464782754647869+5'-UTR,CDS4.350446.83823K562DDX24
chr195464690954646922+5'-UTR,CDS3.920635.96588K562ZNF622
chr195464685454646906+5'-UTR,CDS,intron-Proximal3.280774.37507K562DDX24
chr195464647654646515+5'-UTR,intron-Distal4.239324.51299HepG2SUGP2
chr195464509754645164+5'-UTR,intron-Distal5.3812111.61033HepG2SUGP2
chr195465236354652423+5'-UTR,CDS3.494587.08969K562ZNF622
chr195464147954641557+5'-UTR3.874694.35138HepG2NCBP2
chr195464721154647253+5'-UTR,CDS,intron-Proximal3.409175.65791K562ZNF622
chr195465188254652017+5'-UTR,CDS,intron-Proximal3.317688.13818K562ZNF800
chr195464739454647435+5'-UTR,CDS,intron-Proximal3.761309.20664K562ZNF622
chr195464685454646904+5'-UTR,CDS,intron-Proximal3.259675.92720K562ZNF622
chr195464775954647834+5'-UTR,CDS3.079387.74926K562UCHL5
chr195464733354647403+5'-UTR,CDS,intron-Proximal5.2883310.42871HepG2SF3B4
chr195464666754646740+5'-UTR,CDS,intron-Proximal3.802377.09278HepG2PPIG
chr195465204054652118+5'-UTR,CDS3.116217.60260K562ZNF622
chr195464685454646891+5'-UTR,CDS,intron-Proximal3.969064.36481K562EFTUD2
chr195464147954641567+5'-UTR3.342293.38111K562DDX3X
chr195464774654647862+5'-UTR,CDS3.727289.99012HepG2PPIG
chr195464970654649758+5'-UTR,CDS4.054084.01763HepG2GRWD1
chr195464739654647491+5'-UTR,CDS,intron-Proximal3.575296.58996HepG2GRWD1
chr195464538454645458+5'-UTR,intron-Distal4.704526.75776K562MATR3
chr195465034254650395+5'-UTR,CDS,intron-Proximal3.436506.80450K562UCHL5
chr195464745054647502+5'-UTR,CDS,intron-Proximal3.433095.70176HepG2AQR
chr195464669254646738+5'-UTR,CDS3.523384.65365HepG2GRWD1
chr195465327454653334+5'-UTR,CDS,intron-Proximal3.425667.17950K562AQR
chr195464964554649691+5'-UTR,CDS,intron-Proximal3.820095.42720K562UCHL5
chr195465215854652271+5'-UTR,CDS,intron-Proximal4.113903.68241HepG2G3BP1
chr195464784454647902+5'-UTR,CDS,intron-Proximal3.213587.35853HepG2PRPF8
chr195464949354649579+5'-UTR,CDS,intron-Proximal3.968187.80656HepG2GRWD1
chr195464665154646713+5'-UTR,intron-Proximal4.312405.28637K562U2AF2
chr195464954454649586+5'-UTR,CDS,intron-Proximal3.469286.34662HepG2PRPF8
chr195464665754646746+5'-UTR,CDS,intron-Proximal4.741474.54356K562DDX3X
chr195465188254652025+5'-UTR,CDS,intron-Proximal3.5321411.03157K562PUM1
chr195464587354645966+5'-UTR,intron-Distal4.762656.26399K562MATR3
chr195465205454652185+5'-UTR,CDS4.164834.47904K562HNRNPK
chr195464720854647237+5'-UTR,CDS3.570803.12941K562UCHL5
chr195464662254646662+5'-UTR,intron-Proximal3.430435.28154K562SF3B4
chr195464797254648000+5'-UTR,CDS,intron-Proximal3.232723.24717K562ZNF800
chr195464646554646529+5'-UTR,intron-Distal3.112533.31456K562TIA1
chr195464537354645422+5'-UTR,intron-Distal4.687216.08205HepG2MATR3
chr195464542954645488+5'-UTR,intron-Distal5.242219.48778HepG2SUGP2
chr195464943254649479+5'-UTR,CDS4.023383.38114HepG2GRWD1
chr195465348454653534+5'-UTR,CDS,intron-Proximal3.219885.76569HepG2PRPF8
chr195464220954642309+intron-Distal4.2616215.18375HepG2MATR3
chr195465376954653810+intron-Distal4.519573.55787K562PTBP1
chr195465685954656916+intron-Distal,intron-Proximal4.955775.50068HepG2DDX59
chr195464392154643993+intron-Distal5.022887.64982K562MATR3
chr195464222154642294+intron-Distal4.670965.32928K562MATR3
chr195464177654641855+intron-Distal,intron-Proximal3.595405.62912HepG2CSTF2T
chr195464500254645046+intron-Distal3.761066.02877HepG2SUGP2
chr195464421454644276+intron-Distal3.369674.86332HepG2SUGP2
chr195464252054642584+intron-Distal4.388065.01722K562CSTF2T
chr195464402254644052+intron-Distal4.532545.42507HepG2MATR3
chr195464451254644555+intron-Distal4.240066.63948HepG2MATR3
chr195464392154643964+intron-Distal3.060273.72876HepG2MATR3
chr195464430254644362+intron-Distal4.094296.29761HepG2MATR3
chr195464225454642325+intron-Distal3.252163.26639K562NONO
chr195465361854653681+intron-Distal3.100603.26015K562PTBP1
chr195464400154644077+intron-Distal4.0034111.48892HepG2SUGP2
chr195464204354642111+intron-Distal4.481884.96496K562NONO
chr195464190954641963+intron-Distal3.001893.14895K562NONO
chr195464223154642329+intron-Distal3.477809.40890K562DROSHA
chr195465372154653769+intron-Distal3.928285.39628K562PTBP1
chr195464430354644364+intron-Distal3.948323.53896K562NONO
chr195464202254642116+intron-Distal4.895466.77551K562MATR3
chr195464391654643996+intron-Distal3.6624710.20537HepG2SUGP2
chr195465110654651183+intron-Distal5.7596110.52887K562SF3B4
chr195464444954644592+intron-Distal5.7062010.88401K562MATR3
chr195464258354642628+intron-Distal4.440484.18579K562MATR3
chr195464455454644596+intron-Distal3.825706.51675HepG2SUGP2
chr195464254454642580+intron-Distal4.536025.01910HepG2MATR3
chr195464225654642313+intron-Distal3.313244.88494K562DHX30
chr195464223154642331+intron-Distal3.5585310.38673HepG2SUGP2
chr195464253154642583+intron-Distal4.370683.98553K562NONO
chr195464478954644849+intron-Distal5.3776311.58997HepG2SUGP2
chr195464223554642310+intron-Distal3.198933.30889K562GTF2F1
chr195464254054642587+intron-Distal4.667955.04879HepG2SUGP2
chr195464200954642140+intron-Distal3.587106.96229HepG2CSTF2T
chr195464292454643021+intron-Distal4.271894.47904K562HNRNPK
chr195464436954644419+intron-Distal3.392576.07779HepG2SUGP2
chr195464344754643496+intron-Distal3.492404.36355HepG2LIN28B
chr195465072454650810+intron-Distal4.355646.10653K562SF3B4
chr195465889054658943+intron-Distal,intron-Proximal4.039793.51664K562RBM15
chr195464430954644351+intron-Distal4.415815.01208K562MATR3
chr195464220954642316+intron-Distal3.673065.08364HepG2PRPF4
chr195465112954651190+intron-Distal4.878178.42614HepG2EFTUD2
chr195465073854650786+intron-Distal4.122457.26711HepG2EFTUD2
chr195464208554642135+intron-Distal3.530153.51298K562AKAP8L
chr195464480354644862+intron-Distal5.143378.05797HepG2HNRNPM
chr195464318354643255+intron-Distal3.356313.19398HepG2XPO5
chr195464271254642752+intron-Distal4.542185.58061HepG2SUGP2
chr195465054054650569+intron-Distal4.945635.16714HepG2EFTUD2
chr195464223154642324+intron-Distal4.112497.80707K562EWSR1
chr195465359054653777+intron-Distal,intron-Proximal3.994305.65979HepG2PTBP1
chr195465111854651174+intron-Distal4.343297.95645K562EFTUD2
chr195464201454642058+intron-Distal3.532544.61905HepG2MATR3
chr195464344354643523+intron-Distal5.514359.79297K562LIN28B
chr195464343254643480+intron-Distal3.883597.03506HepG2SUGP2
chr195465349354653573+intron-Proximal5.8932111.65826K562AQR
chr195465758554657614+intron-Proximal3.050907.76525HepG2PRPF8
chr195465676954656780+intron-Proximal4.0676610.58560K562AQR
chr195465181054651879+intron-Proximal5.629426.41139HepG2EFTUD2
chr195464735654647396+intron-Proximal3.632687.49660K562SF3B4
chr195464979754649816+intron-Proximal4.951736.26248HepG2PRPF8
chr195464789054647952+intron-Proximal4.347575.95597K562EFTUD2
chr195465248754652546+intron-Proximal4.2348211.58353K562AQR
chr195465230754652348+intron-Proximal5.334435.99517HepG2EFTUD2
chr195464172054641776+intron-Proximal4.069763.94684HepG2CSTF2T
chr195464693054646964+intron-Proximal4.888895.65342K562AQR
chr195464692254646930+intron-Proximal4.360593.32531K562AQR
chr195465636354656410+intron-Proximal5.912769.95272K562AQR
chr195465247954652524+intron-Proximal4.704034.68690HepG2PRPF8
chr195465760954657653+intron-Proximal3.8240715.97737K562AQR
chr195464727954647333+intron-Proximal4.289235.03032HepG2SF3B4
chr195464977954649797+intron-Proximal3.717265.01332HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNOT3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNOT3 is not available on ENCORE database.

  • 98 RBPs can affect the levels of CNOT3.  








The Knockdown/knockout RNA-Seq assay for CNOT3 is not available on ENCORE database.





98 RBPs can affect the gene expression of CNOT3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNOT3ENSG00000088038.13390.60490622.78610-0.673003.182702.61690HepG2AKAP1
CNOT3ENSG00000088038.13788.486901087.95600-0.464503.589902.82490HepG2AUH
CNOT3ENSG00000088038.13804.82960545.932000.559903.242302.22890HepG2BCCIP
CNOT3ENSG00000088038.131318.022702182.43370-0.7276011.065009.97240HepG2BOP1
CNOT3ENSG00000088038.13821.843401226.65300-0.577807.385806.20790HepG2CALR
CNOT3ENSG00000088038.13323.88280538.01660-0.732204.661002.74680HepG2CSTF2T
CNOT3ENSG00000088038.13416.29090567.16910-0.446203.103502.13470HepG2DDX24
CNOT3ENSG00000088038.13690.86900512.629500.430402.312801.74370HepG2DDX6
CNOT3ENSG00000088038.13941.99570785.888300.261302.122101.51670HepG2DKC1
CNOT3ENSG00000088038.13735.64970532.118400.467205.792104.89970HepG2DNAJC2
CNOT3ENSG00000088038.131078.38910769.345000.487102.888101.94780HepG2EEF2
CNOT3ENSG00000088038.13307.79140533.69190-0.794105.648304.07500HepG2AGO1
CNOT3ENSG00000088038.13684.06880492.563700.473702.795902.19920HepG2EIF2S1
CNOT3ENSG00000088038.13784.17070544.224900.526903.397102.69060HepG2EIF4A3
CNOT3ENSG00000088038.13730.99520530.100500.463502.246801.62300HepG2EIF4B
CNOT3ENSG00000088038.13678.78180850.24570-0.324902.698701.86970HepG2EIF4G1
CNOT3ENSG00000088038.13990.89970549.450700.850609.361608.15830HepG2FXR1
CNOT3ENSG00000088038.13778.34120509.511700.611204.626903.77630HepG2G3BP1
CNOT3ENSG00000088038.13780.47420555.968900.489203.677002.63090HepG2GEMIN5
CNOT3ENSG00000088038.131415.679402271.37650-0.682107.516906.49280HepG2GPKOW
CNOT3ENSG00000088038.13710.88790541.964400.391302.594501.96670HepG2HNRNPA1
CNOT3ENSG00000088038.13881.15050516.357200.770908.121606.97390HepG2HNRNPK
CNOT3ENSG00000088038.13966.66090784.938000.300303.510902.75920HepG2HNRNPL
CNOT3ENSG00000088038.131574.441502167.60700-0.461304.322203.55070HepG2HNRNPLL
CNOT3ENSG00000088038.13887.04340598.861100.566707.962506.97440HepG2HNRNPU
CNOT3ENSG00000088038.13676.25830517.841900.385002.097401.50090HepG2IGF2BP2
CNOT3ENSG00000088038.13729.86670611.714700.254702.195801.53430HepG2ILF2
CNOT3ENSG00000088038.13726.34010552.663300.394102.032501.48690HepG2MATR3
CNOT3ENSG00000088038.131146.400101436.31930-0.325302.555601.77670HepG2MSI2
CNOT3ENSG00000088038.13873.97260565.635300.627604.948104.11170HepG2NCBP2
CNOT3ENSG00000088038.131436.736301921.92230-0.419803.913603.02890HepG2NSUN2
CNOT3ENSG00000088038.13797.33440592.754400.427704.484003.43600HepG2PARN
CNOT3ENSG00000088038.13730.55820548.185800.414203.653702.97680HepG2PCBP1
CNOT3ENSG00000088038.13812.04590534.134100.604305.184104.20390HepG2PPIL4
CNOT3ENSG00000088038.13988.90740865.961200.191401.845401.34000HepG2PUM1
CNOT3ENSG00000088038.131067.66090865.306500.303102.599801.94910HepG2PUM2
CNOT3ENSG00000088038.13801.36420620.794800.368203.027402.46590HepG2NELFE
CNOT3ENSG00000088038.13782.37970578.279400.436002.915502.28440HepG2RECQL
CNOT3ENSG00000088038.13930.759301196.61420-0.362502.834702.14470HepG2RPLP0
CNOT3ENSG00000088038.13832.47360607.704400.453903.739003.03520HepG2RPS19
CNOT3ENSG00000088038.13971.55380533.304900.8652018.7907017.33260HepG2SAFB2
CNOT3ENSG00000088038.131667.818402145.56310-0.363403.212702.45530HepG2SF3B1
CNOT3ENSG00000088038.13737.65730580.694700.345102.374701.82130HepG2SF3B4
CNOT3ENSG00000088038.13735.56440621.911300.242001.885301.33680HepG2SMN1
CNOT3ENSG00000088038.13777.73360550.041100.499602.408401.51930HepG2SMNDC1
CNOT3ENSG00000088038.131053.816902387.29350-1.1798013.2256011.53330HepG2SNRNP70
CNOT3ENSG00000088038.13814.14390606.164900.425503.670003.14460HepG2SRSF1
CNOT3ENSG00000088038.131755.922702308.46170-0.394702.541701.58590HepG2SRSF3
CNOT3ENSG00000088038.131245.296001023.784800.282502.859502.34030HepG2SSB
CNOT3ENSG00000088038.131129.09820915.981900.301703.563902.87490HepG2SUCLG1
CNOT3ENSG00000088038.13415.11540534.32690-0.364201.957101.37370HepG2SUPV3L1
CNOT3ENSG00000088038.131632.504502112.46860-0.371802.577501.87390HepG2TARDBP
CNOT3ENSG00000088038.13717.90700581.858700.303002.143401.69250HepG2TIAL1
CNOT3ENSG00000088038.13754.65150587.110300.362103.532402.91230HepG2TRIM56
CNOT3ENSG00000088038.131113.89390796.984700.482904.607903.44600HepG2TUFM
CNOT3ENSG00000088038.133174.800801379.401101.202504.488203.21710HepG2U2AF2
CNOT3ENSG00000088038.131026.910301346.50070-0.390903.137802.50660HepG2UTP3
CNOT3ENSG00000088038.13744.22450525.987400.500602.903702.16060HepG2XRN2
CNOT3ENSG00000088038.13827.432801058.60220-0.355404.452003.63160HepG2ZC3H8
CNOT3ENSG00000088038.135464.561303258.538900.7458018.9168017.55600K562AGGF1
CNOT3ENSG00000088038.134628.705103580.927000.370203.766502.58000K562AKAP8
CNOT3ENSG00000088038.134538.214003390.727600.420402.716302.06920K562AKAP8L
CNOT3ENSG00000088038.133818.849001820.236201.0689025.3829023.79870K562AQR
CNOT3ENSG00000088038.132148.201901348.306500.671903.124701.98960K562CCAR1
CNOT3ENSG00000088038.132662.651702215.498100.265103.404802.06000K562DDX21
CNOT3ENSG00000088038.133925.130803236.331100.278304.237903.45480K562DDX47
CNOT3ENSG00000088038.131535.030501226.484000.323603.640402.08450K562DDX6
CNOT3ENSG00000088038.134495.924003648.225600.301302.594601.75060K562DKC1
CNOT3ENSG00000088038.131289.05980920.396600.485904.138603.00350K562EFTUD2
CNOT3ENSG00000088038.132415.536301371.380100.816606.738805.11470K562EIF3A
CNOT3ENSG00000088038.131306.60200985.267500.407102.555201.56450K562EIF3D
CNOT3ENSG00000088038.13855.09210545.675000.647908.496507.10680K562EIF3G
CNOT3ENSG00000088038.131397.877701138.199600.296402.959901.75410K562EIF4B
CNOT3ENSG00000088038.131379.378801103.236700.322203.171801.77300K562EWSR1
CNOT3ENSG00000088038.131069.26920782.187500.450904.255602.44300K562G3BP1
CNOT3ENSG00000088038.13356.08560641.04600-0.848203.561702.73550K562G3BP2
CNOT3ENSG00000088038.134569.540802967.987300.622502.786801.56310K562HNRNPA2B1
CNOT3ENSG00000088038.131418.28930818.572600.792905.340603.72160K562IGF2BP2
CNOT3ENSG00000088038.131127.73170832.404500.438003.617902.21290K562IGF2BP3
CNOT3ENSG00000088038.134380.184903598.163400.283602.915802.06700K562KIF1C
CNOT3ENSG00000088038.132150.080001669.138300.365202.820601.35280K562LIN28B
CNOT3ENSG00000088038.134726.478903444.527400.456406.634504.67520K562MAK16
CNOT3ENSG00000088038.131157.27360857.988300.431604.280803.11160K562MATR3
CNOT3ENSG00000088038.135533.378804030.886200.457002.757001.85020K562MBNL1
CNOT3ENSG00000088038.133735.034202825.381000.402602.859501.96050K562NAA15
CNOT3ENSG00000088038.134959.122902595.948000.933704.989903.54930K562PABPN1
CNOT3ENSG00000088038.131179.85570840.685100.488905.498903.53560K562PCBP1
CNOT3ENSG00000088038.131009.61630764.926300.400302.504301.57530K562PCBP2
CNOT3ENSG00000088038.131227.74060895.656900.454903.598302.74210K562PRPF8
CNOT3ENSG00000088038.131925.992101474.905100.384903.554402.51100K562PSIP1
CNOT3ENSG00000088038.132731.402303275.15180-0.261902.787801.71480K562PUM1
CNOT3ENSG00000088038.135909.709103362.169700.813605.828005.07530K562PUS1
CNOT3ENSG00000088038.135027.498803276.343600.617703.840303.15790K562RBM15
CNOT3ENSG00000088038.131167.97540800.777300.544403.480902.53270K562RBM22
CNOT3ENSG00000088038.131656.959101346.211000.299502.628901.66410K562RCC2
CNOT3ENSG00000088038.13725.20980537.472200.432104.655702.60300K562RPS10
CNOT3ENSG00000088038.132293.555801761.543700.380603.538302.30860K562SAFB
CNOT3ENSG00000088038.13968.08020665.891300.539702.971302.08400K562SF3B4
CNOT3ENSG00000088038.134559.881602893.934700.655902.734901.44720K562SFPQ
CNOT3ENSG00000088038.134568.376802726.510500.744503.509602.06860K562SNRNP200
CNOT3ENSG00000088038.131935.164501276.114900.600607.703505.74050K562SRFBP1
CNOT3ENSG00000088038.131361.95190819.016000.7336011.258509.84470K562SRSF1
CNOT3ENSG00000088038.132563.104401939.358200.402204.649303.22070K562SRSF4
CNOT3ENSG00000088038.131310.52110773.632800.760305.968504.32350K562SRSF5
CNOT3ENSG00000088038.131470.49470828.781100.827107.251006.04590K562TARDBP
CNOT3ENSG00000088038.131382.93820799.483600.790503.985402.97710K562TIA1
CNOT3ENSG00000088038.131369.42520784.807100.803106.632004.76370K562TRA2A
CNOT3ENSG00000088038.132368.587501507.635900.651608.981507.05830K562TRIM56
CNOT3ENSG00000088038.133063.325702557.986000.260002.303701.50330K562WDR3
CNOT3ENSG00000088038.133167.995402659.955300.252104.083103.07020K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNOT3 is not available on ENCORE database.





14 RBPs can affect the splicing of CNOT3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCNOT3ENSG00000088038.13chr19+5465899554659419546590465465941954657476546575770.361000.000000.00000longerHepG2U2AF2
A3SSCNOT3ENSG00000088038.13chr19+5464933054649553546493335464955354647972546480680.191000.000050.00226longerHepG2U2AF2
A3SSCNOT3ENSG00000088038.13chr19+5464933054649553546493335464955354647972546480680.144000.001010.08139longerHepG2RBM22
A3SSCNOT3ENSG00000088038.13chr19+5464927754649553546493305464955354647972546480680.270000.001210.00826longerK562AQR
A3SSCNOT3ENSG00000088038.13chr19+5465899554659419546590465465941954657476546575770.057000.002520.09899longerK562PUS1
A3SSCNOT3ENSG00000088038.13chr19+5465899554659419546590465465941954657476546575770.217000.000000.00056longerK562SF3B1
A3SSCNOT3ENSG00000088038.13chr19+5464927754649553546493335464955354647972546480680.060000.000490.09654longerHepG2FTO
A5SSCNOT3ENSG00000088038.13chr19+5464965054649895546496505464977954650336546503930.062000.000000.00012longerK562AQR
A5SSCNOT3ENSG00000088038.13chr19+5465235454652557546523545465247854653294546534930.106000.000000.00000longerK562AQR
RICNOT3ENSG00000088038.13chr19+546574515465941854657451546575775465904654659418-0.077000.000970.05484excludedK562DROSHA
RICNOT3ENSG00000088038.13chr19+5465745154659418546574515465757754659046546594180.263000.000000.00000includedK562PUS1
RICNOT3ENSG00000088038.13chr19+5464739554647870546473955464748554647741546478700.052000.000000.00000includedK562PUS1
RICNOT3ENSG00000088038.13chr19+5465745154659418546574515465757754659046546594180.114000.000040.00084includedK562AGGF1
RICNOT3ENSG00000088038.13chr19+5465745154659418546574515465757754659046546594180.134000.003550.06775includedHepG2FTO
RICNOT3ENSG00000088038.13chr19+5465745154659418546574515465757754659046546594180.098000.009100.07957includedHepG2QKI
RICNOT3ENSG00000088038.13chr19+5465745154659418546574515465757754659046546594180.199000.000000.00000includedK562AKAP8L
RICNOT3ENSG00000088038.13chr19+5465745154659418546574515465757754659046546594180.174000.000470.00616includedHepG2U2AF1
RICNOT3ENSG00000088038.13chr19+5465745154659418546574515465757754659046546594180.147000.000000.00002includedK562RBM15
RICNOT3ENSG00000088038.13chr19+5465745154659418546574515465757754659046546594180.091000.015250.08803includedHepG2SF3B4
RICNOT3ENSG00000088038.13chr19+5465745154659418546574515465757754659046546594180.143000.000010.00036includedK562UTP18
RICNOT3ENSG00000088038.13chr19+5465745154659418546574515465757754659046546594180.217000.000000.00000includedK562AQR
RICNOT3ENSG00000088038.13chr19+5464739554647870546473955464748554647741546478700.184000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNOT3 is not avaliable on ENCORE database.