CHPF

General Information

Gene Name       : CHPF
Gene ID             : ENSG00000123989.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHPF)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHPFENSG00000123989.130.100.510.30ENCSR000AEF
HepG2CHPFENSG00000123989.1377.606.7642.18ENCSR985KAT
K562CHPFENSG00000123989.138.331.785.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHPF is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHPF RNA is bound by 16 proteins.  







eCLIP assay for CHPF is not avaliable on ENCORE database.





16 proteins are bound to CHPF RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2220403730220403843-3'-UTR,intron-Distal3.0608318.58147HepG2DDX55
chr2220403865220403938-3'-UTR,intron-Distal5.4413717.02343HepG2PCBP1
chr2220404081220404118-3'-UTR,CDS,intron-Distal,intron-Proximal5.4439380.76387HepG2PCBP2
chr2220403697220403725-3'-UTR,intron-Distal4.2585715.52289HepG2PCBP2
chr2220403780220403840-3'-UTR,intron-Distal3.7471229.61606HepG2LARP4
chr2220404039220404064-3'-UTR,intron-Distal,intron-Proximal3.3251713.22396HepG2DDX55
chr2220403840220403897-3'-UTR,intron-Distal3.4756018.85063HepG2LARP4
chr2220403833220403896-3'-UTR,intron-Distal3.305805.44558HepG2IGF2BP3
chr2220403692220403731-3'-UTR,intron-Distal3.8728012.50250HepG2LARP4
chr2220403789220403845-3'-UTR,intron-Distal3.271087.55544HepG2DDX6
chr2220404006220404059-3'-UTR,intron-Distal,intron-Proximal5.83048400.00000HepG2PCBP2
chr2220404064220404099-3'-UTR,intron-Distal,intron-Proximal3.031388.29764HepG2RPS3
chr2220403965220404114-3'-UTR,CDS,intron-Distal,intron-Proximal4.8905023.79569HepG2UPF1
chr2220403928220403994-3'-UTR,intron-Distal4.153147.20393HepG2AKAP1
chr2220403922220403989-3'-UTR,intron-Distal3.9722122.87144HepG2LARP4
chr2220403938220403999-3'-UTR,intron-Distal,intron-Proximal4.9956316.21468HepG2PCBP1
chr2220404059220404098-3'-UTR,intron-Distal,intron-Proximal4.3421721.09398HepG2LARP4
chr2220403913220403926-3'-UTR,intron-Distal7.7613347.94006HepG2PCBP2
chr2220403731220403878-3'-UTR,intron-Distal3.2665612.87969HepG2UPF1
chr2220403845220403884-3'-UTR,intron-Distal3.624004.68460HepG2DDX6
chr2220403837220403913-3'-UTR,intron-Distal5.94484400.00000HepG2PCBP2
chr2220403926220403996-3'-UTR,intron-Distal,intron-Proximal5.0197267.07927HepG2PCBP2
chr2220403731220403780-3'-UTR,intron-Distal3.7921417.58678HepG2LARP4
chr2220403999220404130-3'-UTR,CDS,intron-Distal,intron-Proximal5.0849533.30063HepG2PCBP1
chr2220403839220403894-3'-UTR,intron-Distal3.126526.72146HepG2AKAP1
chr2220404059220404081-3'-UTR,intron-Distal,intron-Proximal5.9823684.38068HepG2PCBP2
chr2220403914220403965-3'-UTR,intron-Distal4.8005711.81485HepG2UPF1
chr2220404098220404138-3'-UTR,CDS,intron-Distal3.4017413.45965HepG2LARP4
chr2220403989220404059-3'-UTR,intron-Distal,intron-Proximal3.4478125.39651HepG2LARP4
chr2220408250220408314-5'-UTR,CDS,intron-Distal,intron-Proximal3.356639.62683HepG2FTO
chr2220408312220408346-5'-UTR,intron-Distal,intron-Proximal3.7691217.39352HepG2RPS3
chr2220408312220408356-5'-UTR,intron-Distal,intron-Proximal5.40042400.00000HepG2DDX3X
chr2220408256220408322-5'-UTR,CDS,intron-Distal,intron-Proximal3.343287.17081HepG2NOL12
chr2220408346220408417-5'-UTR,intron-Distal,intron-Proximal4.3036127.49742HepG2RPS3
chr2220408356220408456-5'-UTR,intron-Distal,intron-Proximal4.99557400.00000HepG2DDX3X
chr2220408247220408312-5'-UTR,CDS,intron-Distal,intron-Proximal3.9640424.43032HepG2RPS3
chr2220408333220408413-5'-UTR,intron-Distal,intron-Proximal3.223786.91729HepG2FTO
chr2220408244220408312-5'-UTR,CDS,intron-Distal,intron-Proximal5.83337400.00000HepG2DDX3X
chr2220405101220405160-CDS,intron-Distal3.645736.18661HepG2LIN28B
chr2220404345220404388-CDS,intron-Distal3.532358.33934HepG2IGF2BP1
chr2220408189220408245-CDS,intron-Distal4.1255323.30143HepG2RPS3
chr2220406440220406458-CDS,intron-Distal3.788106.65960HepG2RPS3
chr2220408186220408244-CDS,intron-Distal5.14159400.00000HepG2DDX3X
chr2220404232220404290-CDS,intron-Distal4.850365.85529K562RBM15
chr2220408098220408117-CDS,intron-Distal5.1085061.25719HepG2DDX3X
chr2220404138220404202-CDS,intron-Distal3.4760013.45965HepG2LARP4
chr2220406342220406390-CDS,intron-Distal3.844276.22668HepG2NOL12
chr2220404765220404859-CDS,intron-Distal4.4033434.95987HepG2RPS3
chr2220408083220408189-CDS,intron-Distal3.9269625.05143HepG2RPS3
chr2220404767220404830-CDS,intron-Distal3.4236110.63010HepG2NOL12
chr2220408117220408182-CDS,intron-Distal4.85331400.00000HepG2DDX3X
chr2220404678220404796-CDS,intron-Distal3.6392310.03105HepG2SND1
chr2220404252220404276-CDS,intron-Distal4.517375.88337HepG2PCBP1
chr2220404581220404608-CDS,intron-Distal3.036146.37955HepG2IGF2BP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHPF is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHPF is not available on ENCORE database.

  • 117 RBPs can affect the levels of CHPF.  








The Knockdown/knockout RNA-Seq assay for CHPF is not available on ENCORE database.





117 RBPs can affect the gene expression of CHPF :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHPFENSG00000123989.94156.085304953.10310-0.253104.019403.31160HepG2ACO1
CHPFENSG00000123989.93952.442804975.88330-0.332205.569404.51540HepG2AKAP8L
CHPFENSG00000123989.93965.523201170.009301.7609011.001009.36340HepG2BCLAF1
CHPFENSG00000123989.93444.417302167.263700.668303.126602.49430HepG2BOP1
CHPFENSG00000123989.96864.665704221.648600.701302.267101.39340HepG2CCAR1
CHPFENSG00000123989.91271.455203637.31990-1.516402.625801.87140HepG2CIRBP
CHPFENSG00000123989.93546.199201989.523300.833806.652305.62080HepG2CPSF6
CHPFENSG00000123989.97285.511004568.681700.673203.253802.05350HepG2CPSF7
CHPFENSG00000123989.91633.12790955.412100.773306.770905.19100HepG2YBX3
CHPFENSG00000123989.93389.214501351.706901.3261055.1886053.07390HepG2CELF1
CHPFENSG00000123989.92652.069001453.293500.867708.523307.33120HepG2DAZAP1
CHPFENSG00000123989.92707.744204580.63940-0.7585026.2794024.36620HepG2DDX19B
CHPFENSG00000123989.91866.22910956.723200.963902.920801.73380HepG2DDX1
CHPFENSG00000123989.93663.056501324.726901.467308.600507.31890HepG2DDX55
CHPFENSG00000123989.910848.888203810.089101.509605.225304.40200HepG2DDX6
CHPFENSG00000123989.92139.148104738.62480-1.1474040.9425039.14660HepG2DKC1
CHPFENSG00000123989.93126.90790938.112001.736809.128907.90470HepG2DNAJC21
CHPFENSG00000123989.92787.05090929.873401.5835026.6106024.78860HepG2DNAJC2
CHPFENSG00000123989.915215.216003659.342802.0558013.4261012.18820HepG2EIF2S1
CHPFENSG00000123989.93939.825501373.536101.5201031.2991028.89930HepG2EIF4G2
CHPFENSG00000123989.92516.341104807.33440-0.933903.216702.04020HepG2ESF1
CHPFENSG00000123989.9684.507001993.23060-1.542004.236302.98210HepG2FTO
CHPFENSG00000123989.91653.228804846.96340-1.5518060.0840057.01230HepG2FUBP3
CHPFENSG00000123989.92018.233301069.751200.915704.317903.03790HepG2GNB2L1
CHPFENSG00000123989.96929.929604728.437500.551403.767102.64130HepG2HDGF
CHPFENSG00000123989.92582.001401335.677800.950803.712402.65490HepG2HNRNPA2B1
CHPFENSG00000123989.92983.243601990.857400.5834014.9295013.43610HepG2HNRNPF
CHPFENSG00000123989.93875.110301323.801701.5495021.1769019.48300HepG2HNRNPL
CHPFENSG00000123989.92136.339001046.522301.029407.484406.52580HepG2HNRNPU
CHPFENSG00000123989.92857.497101960.425500.543509.171207.92230HepG2IGF2BP1
CHPFENSG00000123989.91736.126301068.985400.6995021.1508019.33920HepG2ILF2
CHPFENSG00000123989.93226.622601483.181301.121203.786902.35300HepG2KHDRBS1
CHPFENSG00000123989.95303.793204527.390100.228203.880702.67650HepG2KIF1C
CHPFENSG00000123989.99645.000204464.080701.111306.493905.21150HepG2LARP4
CHPFENSG00000123989.92145.274701048.603301.032609.076907.14140HepG2LARP7
CHPFENSG00000123989.91648.23160948.020400.797803.633002.00310HepG2NIP7
CHPFENSG00000123989.93688.183801441.089401.3557010.261608.82690HepG2NOL12
CHPFENSG00000123989.92568.63610856.386401.584605.242703.29310HepG2NOLC1
CHPFENSG00000123989.93925.326901217.762901.6885011.451109.14140HepG2NONO
CHPFENSG00000123989.94760.215101420.357001.744708.136206.56550HepG2PABPC1
CHPFENSG00000123989.92065.911201035.859100.995903.956402.96270HepG2PARN
CHPFENSG00000123989.94984.053903930.766300.342406.531105.66010HepG2PCBP1
CHPFENSG00000123989.96435.942104710.023600.450304.162302.05700HepG2PES1
CHPFENSG00000123989.93021.55530933.411701.6946032.5017030.22570HepG2PPIL4
CHPFENSG00000123989.91641.298402437.33130-0.570505.995904.90320HepG2PRPF4
CHPFENSG00000123989.95333.808103999.822300.415103.943303.31570HepG2PTBP1
CHPFENSG00000123989.93467.490101375.680101.3336042.0081040.03530HepG2PUF60
CHPFENSG00000123989.94707.728301460.385201.68860172.12900169.24960HepG2PUM1
CHPFENSG00000123989.92647.664201459.293600.859304.003703.20160HepG2PUM2
CHPFENSG00000123989.93486.064104331.64930-0.313302.234001.66250HepG2QKI
CHPFENSG00000123989.92888.316104662.64560-0.690904.550403.92900HepG2RBM22
CHPFENSG00000123989.92525.735201264.543900.998006.908705.33480HepG2RBM27
CHPFENSG00000123989.91996.819804451.31800-1.1565034.8496033.38740HepG2NELFE
CHPFENSG00000123989.92393.789104145.97950-0.7924019.3079017.92710HepG2RECQL
CHPFENSG00000123989.91179.715502144.65180-0.862304.063403.26130HepG2RPLP0
CHPFENSG00000123989.92228.616701166.072700.934405.777704.64650HepG2RPS2
CHPFENSG00000123989.92007.26030931.965601.1068012.6555011.42730HepG2SAFB2
CHPFENSG00000123989.93265.538401471.440901.150003.289601.86670HepG2SART3
CHPFENSG00000123989.94527.463201319.144901.77900174.11030170.63430HepG2SLBP
CHPFENSG00000123989.92154.195201086.814400.9869043.8378041.84460HepG2SMN1
CHPFENSG00000123989.93424.312201246.104401.458306.502404.98240HepG2SMNDC1
CHPFENSG00000123989.92895.521901189.174101.283804.003202.05140HepG2SND1
CHPFENSG00000123989.93963.282501313.866201.592805.604803.55800HepG2SNRNP200
CHPFENSG00000123989.92996.884905266.02320-0.813305.714705.06720HepG2SRFBP1
CHPFENSG00000123989.91104.742904346.52280-1.97620167.49520165.29330HepG2SRSF1
CHPFENSG00000123989.93662.072801358.331701.4307085.6654082.95180HepG2SRSF5
CHPFENSG00000123989.92936.102901955.954100.585904.578103.71650HepG2SRSF7
CHPFENSG00000123989.93162.672103536.20390-0.161101.888601.41670HepG2SRSF9
CHPFENSG00000123989.91471.305504571.69490-1.6356014.5446013.55610HepG2SSB
CHPFENSG00000123989.93227.921001544.756301.0631035.1340033.34530HepG2SUCLG1
CHPFENSG00000123989.96664.920503782.295700.817206.574805.16650HepG2SUPT6H
CHPFENSG00000123989.9863.741203907.06920-2.17740133.44940130.24910HepG2TAF15
CHPFENSG00000123989.95714.613402098.490701.4452030.5492028.62260HepG2TARDBP
CHPFENSG00000123989.97046.873901025.985902.7799099999.9999999999.99999HepG2TRIM56
CHPFENSG00000123989.94651.157901344.046501.790904.541603.39040HepG2TUFM
CHPFENSG00000123989.93784.018901422.695001.411204.141203.10640HepG2UBE2L3
CHPFENSG00000123989.97498.976204536.614400.7250022.0385020.43770HepG2UPF1
CHPFENSG00000123989.95329.239401399.891501.9285014.0694011.67730HepG2XPO5
CHPFENSG00000123989.91834.603002405.20690-0.390704.124103.32860HepG2ZC3H8
CHPFENSG00000123989.99186.658704989.382000.8806041.5246040.05540HepG2ZNF622
CHPFENSG00000123989.9401.30830531.53310-0.405402.842102.26690K562AGGF1
CHPFENSG00000123989.9778.94400553.088900.493904.219903.41040K562AKAP8L
CHPFENSG00000123989.9448.27810595.63920-0.410001.894701.39170K562AQR
CHPFENSG00000123989.9769.70520580.332100.407302.840301.91620K562ATP5C1
CHPFENSG00000123989.9269.34040138.819100.956104.046102.40480K562BCCIP
CHPFENSG00000123989.9325.60960134.177201.278905.588904.20890K562BCLAF1
CHPFENSG00000123989.9367.61600252.957600.539203.210602.05630K562CCAR1
CHPFENSG00000123989.9796.07440635.196100.325602.479301.37630K562CCDC124
CHPFENSG00000123989.9194.94470104.006500.906304.757203.07540K562CIRBP
CHPFENSG00000123989.9206.67470101.793501.021602.362001.39790K562CSTF2
CHPFENSG00000123989.9410.03540751.91120-0.874803.424902.33740K562CELF1
CHPFENSG00000123989.9201.92810117.604200.779804.432302.74040K562DDX27
CHPFENSG00000123989.9613.78330306.478201.001807.384005.58670K562DDX3X
CHPFENSG00000123989.9411.49150541.70890-0.396703.035602.35670K562DDX47
CHPFENSG00000123989.9457.96050310.713900.559503.161901.73800K562DDX6
CHPFENSG00000123989.9155.82840288.32500-0.887703.900301.76840K562DNAJC2
CHPFENSG00000123989.9812.18110329.826801.3000027.5623025.69880K562EIF2S2
CHPFENSG00000123989.9195.0313098.809000.980904.993302.39060K562EIF3H
CHPFENSG00000123989.9386.65720263.054800.555603.493002.53090K562FIP1L1
CHPFENSG00000123989.95.5800040.03240-2.842805.813304.70310K562G3BP2
CHPFENSG00000123989.9381.39760533.59400-0.484403.893002.54690K562GLRX3
CHPFENSG00000123989.9236.64060158.027200.582402.603501.83180K562GPKOW
CHPFENSG00000123989.9330.5553097.142801.766603.890902.58780K562IGF2BP2
CHPFENSG00000123989.9235.6405098.766001.254406.804904.81580K562IGF2BP3
CHPFENSG00000123989.9156.81980316.05170-1.011104.992803.04290K562ILF2
CHPFENSG00000123989.9164.20420264.29790-0.686703.489201.80660K562ILF3
CHPFENSG00000123989.9234.07280101.991001.198409.265307.66750K562MAGOH
CHPFENSG00000123989.9254.87380101.768501.3244011.585409.58910K562MATR3
CHPFENSG00000123989.9376.49290561.01290-0.575405.699604.56600K562MTPAP
CHPFENSG00000123989.9270.42230460.88500-0.769202.306301.51810K562NAA15
CHPFENSG00000123989.9243.97970121.704501.003303.982102.35870K562NONO
CHPFENSG00000123989.9468.13760623.28900-0.413003.929403.05860K562NSUN2
CHPFENSG00000123989.9461.57930298.655500.628004.679503.57330K562PPIG
CHPFENSG00000123989.9205.98990119.985700.779602.251901.57140K562PRPF8
CHPFENSG00000123989.9364.0245099.098201.8770011.4593010.16790K562PTBP1
CHPFENSG00000123989.9440.45040709.62990-0.688103.081801.95490K562PUM1
CHPFENSG00000123989.9234.3163094.967501.3029010.188608.41870K562RBM22
CHPFENSG00000123989.9267.3297092.618001.5292013.289109.87040K562RBM34
CHPFENSG00000123989.9152.02030308.79550-1.022405.594803.23460K562RPS3A
CHPFENSG00000123989.9190.3156083.619501.186405.362803.90500K562RPS3
CHPFENSG00000123989.9358.62550239.599000.581803.481002.25990K562SAFB
CHPFENSG00000123989.9377.94110615.09660-0.702708.016606.68880K562SF3A3
CHPFENSG00000123989.989.81210150.28210-0.742702.405801.50370K562SF3B1
CHPFENSG00000123989.9322.29920161.613000.995803.415502.24670K562SRFBP1
CHPFENSG00000123989.9183.2994097.160800.915704.603903.69590K562SRSF1
CHPFENSG00000123989.9206.9012080.709601.358007.980206.06440K562SRSF4
CHPFENSG00000123989.9229.0475091.789501.319109.955207.80940K562SRSF5
CHPFENSG00000123989.933.3690083.23670-1.318704.340602.68650K562SSB
CHPFENSG00000123989.9179.18800345.10750-0.945606.399704.27460K562SSRP1
CHPFENSG00000123989.9245.27790437.58990-0.835203.219601.64480K562SUPT6H
CHPFENSG00000123989.9330.8992098.308301.750904.602703.68420K562TARDBP
CHPFENSG00000123989.9365.9091094.836001.9479026.0704023.35270K562TIA1
CHPFENSG00000123989.9247.0527093.120901.4075010.977808.39490K562TRA2A
CHPFENSG00000123989.9339.96160588.09260-0.790704.444503.39010K562WDR43
CHPFENSG00000123989.9211.04940430.52830-1.028504.512902.26500K562YTHDC2
CHPFENSG00000123989.9532.68770670.99040-0.333002.068801.33370K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHPF is not available on ENCORE database.





1 RBPs can affect the splicing of CHPF :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSCHPFENSG00000123989.9chr2-2204056672204058802204056672204058472204063372204069110.257000.000020.00019longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CHPF is not avaliable on ENCORE database.