C1orf85

General Information

Gene Name       : C1orf85
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: C1orf85)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for C1orf85 is not avaliable on ENCORE database.



Proteins bound to RNA
  • C1orf85 RNA is bound by 8 proteins.  







eCLIP assay for C1orf85 is not avaliable on ENCORE database.





8 proteins are bound to C1orf85 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1156260051156260145-3'-UTR,intron-Distal4.053976.56585HepG2TRA2A
chr1156262866156262941-3'-UTR,CDS,intron-Distal,intron-Proximal3.825089.17735HepG2SND1
chr1156262879156262941-3'-UTR,CDS,intron-Distal,intron-Proximal3.553266.34803HepG2LARP4
chr1156259936156260054-3'-UTR,intron-Distal4.530344.34038HepG2BCLAF1
chr1156263746156263832-3'-UTR,CDS,intron-Distal,intron-Proximal4.906526.69228HepG2PRPF8
chr1156263319156263360-3'-UTR,CDS,intron-Distal,intron-Proximal3.511773.57831HepG2SND1
chr1156262545156262649-3'-UTR,intron-Distal,intron-Proximal4.9439414.70319HepG2LARP4
chr1156262736156262822-3'-UTR,5'-UTR,intron-Distal6.0834214.76894HepG2LARP4
chr1156262600156262639-3'-UTR,intron-Distal,intron-Proximal4.7630413.85212HepG2LIN28B
chr1156262664156262736-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.5499112.22246HepG2LARP4
chr1156263119156263165-3'-UTR,CDS,intron-Distal,intron-Proximal3.400506.16769HepG2SND1
chr1156262558156262600-3'-UTR,intron-Distal,intron-Proximal4.3634113.68322HepG2LIN28B
chr1156263934156264018-3'-UTR,CDS,intron-Distal,intron-Proximal3.407236.77216HepG2SND1
chr1156265363156265451-5'-UTR,CDS,intron-Distal,intron-Proximal4.600247.51958HepG2DDX3X
chr1156264667156264773-CDS,intron-Distal4.045397.02113HepG2RPS3
chr1156262941156263000-CDS,intron-Distal,intron-Proximal5.2526312.80856HepG2SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for C1orf85 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for C1orf85 is not available on ENCORE database.

  • 86 RBPs can affect the levels of C1orf85.  








The Knockdown/knockout RNA-Seq assay for C1orf85 is not available on ENCORE database.





86 RBPs can affect the gene expression of C1orf85 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
C1orf85ENSG00000198715.72699.384201635.078100.723208.477106.95870HepG2ABCF1
C1orf85ENSG00000198715.7835.31680974.94730-0.223001.895601.37480HepG2ACO1
C1orf85ENSG00000198715.71194.87670979.527500.286602.722701.96170HepG2AKAP8L
C1orf85ENSG00000198715.71077.933101588.09320-0.5590010.364009.17500HepG2AUH
C1orf85ENSG00000198715.72050.577901241.746200.7236011.004809.91400HepG2BOP1
C1orf85ENSG00000198715.71587.144101090.812200.540905.230904.18530HepG2CIRBP
C1orf85ENSG00000198715.71491.264501140.006000.387403.198202.46420HepG2CPSF6
C1orf85ENSG00000198715.7471.57810669.49000-0.505602.701801.36820HepG2CSTF2T
C1orf85ENSG00000198715.71600.283801188.682500.428907.633806.49210HepG2DAZAP1
C1orf85ENSG00000198715.7911.92770720.702000.339402.372901.73870HepG2DDX21
C1orf85ENSG00000198715.71619.588501142.007100.504003.915503.19040HepG2DDX6
C1orf85ENSG00000198715.71383.79170932.760200.568906.399705.45050HepG2DKC1
C1orf85ENSG00000198715.71420.32000958.993800.566506.818505.75350HepG2DNAJC21
C1orf85ENSG00000198715.71410.743501008.863200.483603.978002.89230HepG2EEF2
C1orf85ENSG00000198715.7758.029601058.97500-0.482303.281301.37190HepG2EIF3H
C1orf85ENSG00000198715.71871.824001212.900000.625905.838404.91160HepG2EIF4A3
C1orf85ENSG00000198715.7797.557901181.12670-0.566503.638302.85520HepG2EIF4B
C1orf85ENSG00000198715.7878.314601172.62160-0.416905.339904.23990HepG2EIF4G1
C1orf85ENSG00000198715.71432.457901823.42170-0.348205.393804.60240HepG2ETF1
C1orf85ENSG00000198715.7784.390001108.18250-0.498604.512303.52280HepG2FUBP3
C1orf85ENSG00000198715.71177.16330766.067600.619704.292902.91590HepG2FUS
C1orf85ENSG00000198715.7659.307601135.34800-0.784108.242207.12360HepG2G3BP1
C1orf85ENSG00000198715.71068.56970729.053600.551504.819103.63590HepG2GEMIN5
C1orf85ENSG00000198715.71168.44990930.795300.328003.703602.58510HepG2HDGF
C1orf85ENSG00000198715.71295.04060968.182200.419503.793103.05390HepG2HNRNPA1
C1orf85ENSG00000198715.71773.446301076.951100.7195010.473609.19850HepG2HNRNPC
C1orf85ENSG00000198715.71324.226101069.828900.307703.642402.95560HepG2HNRNPU
C1orf85ENSG00000198715.71158.77670891.223800.378603.994902.77380HepG2KIF1C
C1orf85ENSG00000198715.73027.627001784.142000.762907.555906.17050HepG2LARP4
C1orf85ENSG00000198715.71758.574201231.310700.514104.149003.39170HepG2MATR3
C1orf85ENSG00000198715.71295.64140856.928300.596302.434401.44480HepG2METAP2
C1orf85ENSG00000198715.7830.920501093.51540-0.396202.891802.12650HepG2NSUN2
C1orf85ENSG00000198715.71487.097701122.164600.406102.983602.23620HepG2PABPC4
C1orf85ENSG00000198715.71310.237401058.913200.307103.413602.48200HepG2PARN
C1orf85ENSG00000198715.71162.85870954.197100.285202.621601.90310HepG2PPIL4
C1orf85ENSG00000198715.7929.841301176.94490-0.340003.805502.91110HepG2PRPF4
C1orf85ENSG00000198715.71548.006801125.134600.460204.743803.98900HepG2PUF60
C1orf85ENSG00000198715.71725.143301193.495200.531407.354106.27950HepG2PUM2
C1orf85ENSG00000198715.71431.05360993.047000.5270010.031408.98210HepG2PUS1
C1orf85ENSG00000198715.7868.653301272.62890-0.551007.259906.31930HepG2QKI
C1orf85ENSG00000198715.71087.91020472.782501.202204.020601.78060HepG2RBM17
C1orf85ENSG00000198715.71226.678101524.02680-0.313101.953801.49860HepG2RBM22
C1orf85ENSG00000198715.71075.424801307.80440-0.282202.731202.19270HepG2NELFE
C1orf85ENSG00000198715.7765.91670952.71380-0.314903.283502.59200HepG2SAFB2
C1orf85ENSG00000198715.7935.42450456.969601.033403.198301.70860HepG2SF1
C1orf85ENSG00000198715.7959.504601220.73630-0.347402.521801.84640HepG2SF3B1
C1orf85ENSG00000198715.7813.845901110.99800-0.449007.080906.12520HepG2SMN1
C1orf85ENSG00000198715.71032.64610714.857100.530502.817601.85220HepG2SMNDC1
C1orf85ENSG00000198715.71078.73750408.128201.402105.984903.87120HepG2SNRNP200
C1orf85ENSG00000198715.71285.386501721.30340-0.421307.369006.65880HepG2SRFBP1
C1orf85ENSG00000198715.7656.976301313.44720-0.9994011.044608.93910HepG2SRSF3
C1orf85ENSG00000198715.7357.370001110.86720-1.6362053.4185051.15990HepG2SRSF5
C1orf85ENSG00000198715.72076.150301494.448600.474209.476608.63810HepG2SSB
C1orf85ENSG00000198715.71673.224801263.395700.405206.645705.75500HepG2SUCLG1
C1orf85ENSG00000198715.7611.143701289.54860-1.077305.644703.74500HepG2SUGP2
C1orf85ENSG00000198715.71894.495501201.962500.656308.632507.45090HepG2TARDBP
C1orf85ENSG00000198715.71555.871001039.435800.581803.608703.05380HepG2TIAL1
C1orf85ENSG00000198715.71580.552601099.155300.523906.343304.93390HepG2TUFM
C1orf85ENSG00000198715.71067.331401412.06630-0.403803.659502.94100HepG2U2AF1
C1orf85ENSG00000198715.7878.47390475.103800.886702.539701.59590HepG2U2AF2
C1orf85ENSG00000198715.7334.12790519.64050-0.637102.900302.12510HepG2UCHL5
C1orf85ENSG00000198715.71084.00100769.471800.494302.355501.37810HepG2XRCC6
C1orf85ENSG00000198715.7982.452901161.51450-0.241502.499801.85590HepG2ZC3H8
C1orf85ENSG00000198715.71723.596601254.428600.458305.917305.19600HepG2ZNF622
C1orf85ENSG00000198715.7209.26140323.67660-0.629202.486401.37370K562AARS
C1orf85ENSG00000198715.7568.40380393.971700.528705.003004.27790K562AGGF1
C1orf85ENSG00000198715.7596.26530432.929000.461703.402502.28880K562AKAP8
C1orf85ENSG00000198715.7573.09860409.948700.483202.206601.62150K562AKAP8L
C1orf85ENSG00000198715.7621.42710415.218700.581603.974103.29550K562AQR
C1orf85ENSG00000198715.7566.85650354.759500.676005.175303.97140K562BOP1
C1orf85ENSG00000198715.7547.64610377.220300.537704.147303.18470K562CPSF6
C1orf85ENSG00000198715.7326.47490537.74850-0.720008.346407.29580K562DDX47
C1orf85ENSG00000198715.7172.01390287.35200-0.740302.926501.88980K562EIF3A
C1orf85ENSG00000198715.7313.12390219.541100.512102.810401.98260K562EIF4A3
C1orf85ENSG00000198715.747.60020118.49310-1.315802.281701.64750K562G3BP2
C1orf85ENSG00000198715.7500.43970360.159800.474503.002502.17660K562GPKOW
C1orf85ENSG00000198715.7681.86510460.427400.566404.661303.68160K562GRSF1
C1orf85ENSG00000198715.7681.16960354.186000.9434011.5159010.37070K562HNRNPC
C1orf85ENSG00000198715.7465.97640230.547601.015102.171701.31530K562PABPN1
C1orf85ENSG00000198715.7856.51850406.532601.075004.751604.06450K562PUS1
C1orf85ENSG00000198715.7546.11680396.124700.463203.665402.99660K562RBM15
C1orf85ENSG00000198715.7289.85480194.471500.575703.187402.27890K562RBM22
C1orf85ENSG00000198715.7414.50950289.723600.516603.366402.27300K562RCC2
C1orf85ENSG00000198715.7800.18470483.625700.726308.277906.92670K562SF3A3
C1orf85ENSG00000198715.7214.36170122.968900.801703.410002.45720K562SF3B4
C1orf85ENSG00000198715.7420.89350274.651400.615804.046002.73160K562SRFBP1
C1orf85ENSG00000198715.7368.23160198.869900.888707.257506.12200K562SRSF1
C1orf85ENSG00000198715.7502.19630369.977300.440703.482302.15770K562SRSF7
C1orf85ENSG00000198715.7356.94560201.252200.826606.127905.04270K562TARDBP
C1orf85ENSG00000198715.7264.45760194.134900.445902.012701.32150K562TIA1
C1orf85ENSG00000198715.7490.68740305.443400.683804.804003.54220K562TIAL1
C1orf85ENSG00000198715.7503.53860324.481700.633904.085202.88950K562TRIM56
C1orf85ENSG00000198715.7693.61710511.672300.438804.378302.77900K562TROVE2
C1orf85ENSG00000198715.7842.70320519.709600.6972010.781509.47940K562UPF1
C1orf85ENSG00000198715.7565.39000444.701000.346302.107201.34480K562WDR3
C1orf85ENSG00000198715.7259.69250462.42430-0.8324010.268708.75490K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for C1orf85 is not available on ENCORE database.





10 RBPs can affect the splicing of C1orf85 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEC1orf85ENSG00000198715.7chr1-156264549156264807156264155156264356156265316156265445-0.208000.000000.00001excludedHepG2RBM22
SEC1orf85ENSG00000198715.7chr1-1562645491562648071562641551562643561562653161562654450.133000.000220.00783includedHepG2HNRNPK
SEC1orf85ENSG00000198715.7chr1-156264549156264807156264155156264356156265316156265463-0.161000.000050.00963excludedHepG2DDX59
SEC1orf85ENSG00000198715.7chr1-156264549156264658156264155156264356156265316156265463-0.212000.006570.05815excludedK562AQR
SEC1orf85ENSG00000198715.7chr1-156263110156263367156262478156263000156263808156264027-0.138000.000000.00012excludedHepG2FTO
SEC1orf85ENSG00000198715.7chr1-156264549156264807156264155156264356156265316156265463-0.212000.000040.00603excludedHepG2FTO
SEC1orf85ENSG00000198715.7chr1-156264549156264807156264155156264356156265316156265463-0.183000.000330.03011excludedHepG2IGF2BP3
SEC1orf85ENSG00000198715.7chr1-156264549156264807156264155156264356156265316156265445-0.180000.000010.00184excludedHepG2TIAL1
SEC1orf85ENSG00000198715.7chr1-156264549156264807156264155156264356156265316156265445-0.135000.000900.04287excludedHepG2SF3B4
SEC1orf85ENSG00000198715.7chr1-156264549156264807156264155156264356156265316156265445-0.152000.000100.00579excludedHepG2HNRNPC
SEC1orf85ENSG00000198715.7chr1-156264549156264807156264155156264356156265316156265445-0.282000.000000.00000excludedHepG2SRSF9

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for C1orf85 is not avaliable on ENCORE database.