TSTA3

General Information

Gene Name : TSTA3
Gene ID : ENSG00000104522.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TSTA3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TSTA3	ENSG00000104522.15	28.08	37.17	32.62	ENCSR000AEF
HepG2	TSTA3	ENSG00000104522.15	81.69	39.26	60.47	ENCSR985KAT
K562	TSTA3	ENSG00000104522.15	65.00	73.14	69.07	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TSTA3 is not avaliable on ENCORE database.

Proteins bound to RNA

TSTA3 RNA is bound by 16 proteins.

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eCLIP assay for TSTA3 is not avaliable on ENCORE database.

16 proteins are bound to TSTA3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	144698238	144698288	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.61624	16.64887	HepG2	PRPF8
chr8	144694872	144694946	-	3'-UTR,intron-Distal	3.90773	12.80947	K562	YBX3
chr8	144694789	144694984	-	3'-UTR,intron-Distal,intron-Proximal	3.46305	10.66030	K562	PABPC4
chr8	144694968	144695020	-	3'-UTR,intron-Distal	5.16518	9.40283	K562	YBX3
chr8	144696488	144696562	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.30175	8.10600	HepG2	PPIG
chr8	144695696	144695774	-	CDS,intron-Distal,intron-Proximal	5.59316	7.72885	K562	DDX24
chr8	144696756	144696821	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.16964	7.35950	HepG2	PPIG
chr8	144696890	144696937	-	intron-Distal,intron-Proximal	4.10579	7.13970	HepG2	PRPF8
chr8	144695920	144695982	-	CDS,intron-Distal,intron-Proximal	4.14825	6.81381	K562	DDX24
chr8	144696710	144696756	-	intron-Distal,intron-Proximal	4.12712	6.72556	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 37 entries

eCLIP assay for TSTA3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TSTA3 is not available on ENCORE database.
98 RBPs can affect the levels of TSTA3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TSTA3 is not available on ENCORE database.

98 RBPs can affect the gene expression of TSTA3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TSTA3	ENSG00000104522.11	1225.14140	572.54700	1.09740	30.63970	28.87310	HepG2	SRSF5
TSTA3	ENSG00000104522.11	1244.55710	569.75760	1.12710	30.32670	28.67450	HepG2	CELF1
TSTA3	ENSG00000104522.11	1100.73380	442.80820	1.31360	22.78890	20.96830	HepG2	HNRNPK
TSTA3	ENSG00000104522.11	1088.39780	651.12180	0.74110	15.83840	14.54840	HepG2	SUCLG1
TSTA3	ENSG00000104522.11	838.23700	419.66340	0.99800	16.38910	14.38260	K562	EIF3G
TSTA3	ENSG00000104522.11	1103.38540	511.83510	1.10810	15.05860	13.71350	HepG2	DDX3X
TSTA3	ENSG00000104522.11	925.99440	570.20700	0.69940	13.52270	12.54200	HepG2	ZNF622
TSTA3	ENSG00000104522.11	511.15500	851.50990	-0.73630	11.63800	10.80070	HepG2	SRFBP1
TSTA3	ENSG00000104522.11	1835.52810	1250.11930	0.55400	11.33850	10.28330	K562	AGGF1
TSTA3	ENSG00000104522.11	1873.76020	1274.62400	0.55580	11.29500	10.07630	K562	DDX47
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 117 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TSTA3 is not available on ENCORE database.

37 RBPs can affect the splicing of TSTA3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	TSTA3	ENSG00000104522.11	chr8	-	144696793	144696867	144696489	144696623	144696956	144697085	-0.14700	0.00000	excluded	K562	HNRNPC
A3SS	TSTA3	ENSG00000104522.11	chr8	-	144698275	144698610	144698275	144698390	144698736	144698893	0.12400	0.00001	longer	K562	AGGF1
A3SS	TSTA3	ENSG00000104522.11	chr8	-	144698275	144698610	144698275	144698390	144698736	144698893	0.14500	0.00000	longer	K562	AKAP8L
A3SS	TSTA3	ENSG00000104522.11	chr8	-	144698275	144698610	144698275	144698390	144698736	144698893	0.25100	0.00000	longer	HepG2	U2AF2
A3SS	TSTA3	ENSG00000104522.11	chr8	-	144698275	144698610	144698275	144698390	144698736	144698893	0.07400	0.00007	longer	K562	HNRNPUL1
A3SS	TSTA3	ENSG00000104522.11	chr8	-	144698275	144698610	144698275	144698390	144698736	144698893	0.12100	0.00000	longer	K562	AQR
A3SS	TSTA3	ENSG00000104522.11	chr8	-	144695693	144695802	144695693	144695773	144695920	144695987	0.11200	0.00000	longer	K562	AQR
A3SS	TSTA3	ENSG00000104522.11	chr8	-	144698275	144698610	144698275	144698390	144698736	144698893	0.20000	0.00000	longer	K562	PUS1
A3SS	TSTA3	ENSG00000104522.11	chr8	-	144698275	144698610	144698275	144698390	144698736	144698893	0.28200	0.00000	longer	HepG2	U2AF1
A3SS	TSTA3	ENSG00000104522.11	chr8	-	144698275	144698610	144698275	144698390	144698736	144698893	0.10400	0.00009	longer	HepG2	SRSF7

Showing 1 to 10 of 90 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TSTA3

General Information

Functions

Localization

Domains (AlphaFold: TSTA3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TSTA3 is not avaliable on ENCORE database.

16 proteins are bound to TSTA3 RNA:

eCLIP assay for TSTA3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TSTA3 is not available on ENCORE database.

98 RBPs can affect the gene expression of TSTA3 :

The Knockdown/knockout RNA-Seq assay for TSTA3 is not available on ENCORE database.

37 RBPs can affect the splicing of TSTA3 :

The Knockdown/knockout RNA-Seq assay for TSTA3 is not avaliable on ENCORE database.