TRIM38

General Information

Gene Name       : TRIM38
Gene ID             : ENSG00000112343.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRIM38)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIM38ENSG00000112343.1011.699.7010.70ENCSR000AEF
HepG2TRIM38ENSG00000112343.101.362.021.69ENCSR985KAT
K562TRIM38ENSG00000112343.104.264.414.33ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRIM38 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRIM38 RNA is bound by 8 proteins.  







eCLIP assay for TRIM38 is not avaliable on ENCORE database.





8 proteins are bound to TRIM38 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62596328425963380+5'-UTR3.866437.35414K562ZNF622
chr62597338225973497+CDS,intron-Proximal3.135234.26863K562BUD13
chr62596963825969747+CDS,intron-Proximal3.800227.64882K562PRPF8
chr62597221225972310+CDS3.036504.01178K562ZNF622
chr62597330625973457+CDS,intron-Proximal4.5536710.64872K562EFTUD2
chr62597329825973430+CDS,intron-Proximal4.499124.54675K562XRN2
chr62597326825973370+CDS,intron-Proximal3.647287.70481K562AQR
chr62597340025973450+CDS,intron-Proximal4.603314.65563K562AQR
chr62597333325973458+CDS,intron-Proximal4.150427.83642HepG2BUD13
chr62597229125972372+CDS,intron-Proximal5.7724812.15317HepG2PRPF8
chr62597327325973366+CDS,intron-Proximal4.961284.28193HepG2AQR
chr62597329725973369+CDS,intron-Proximal4.780036.01989HepG2PRPF8
chr62596955225969614+CDS,intron-Proximal4.624044.10264K562ZNF622
chr62597164325971712+intron-Distal4.146904.13641K562TARDBP
chr62597240725972502+intron-Distal,intron-Proximal4.234826.77156K562AQR
chr62597174125971844+intron-Distal3.980004.02823K562HNRNPL
chr62597232725972407+intron-Proximal5.365986.22530K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRIM38 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRIM38 is not available on ENCORE database.

  • 95 RBPs can affect the levels of TRIM38.  








The Knockdown/knockout RNA-Seq assay for TRIM38 is not available on ENCORE database.





95 RBPs can affect the gene expression of TRIM38 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRIM38ENSG00000112343.8436.25170257.999400.757705.778104.28100HepG2AATF
TRIM38ENSG00000112343.8608.45410329.843300.8833013.6025012.46960HepG2ACO1
TRIM38ENSG00000112343.8205.95060310.90290-0.594203.203702.13400HepG2ADAR
TRIM38ENSG00000112343.81089.86300355.328101.6168024.8390023.42540HepG2AKAP1
TRIM38ENSG00000112343.8734.50360550.172700.416802.565201.56240HepG2AKAP8
TRIM38ENSG00000112343.8420.84850294.017800.517302.810202.02080HepG2ASCC1
TRIM38ENSG00000112343.8722.93230483.930200.579006.889505.88510HepG2AUH
TRIM38ENSG00000112343.8472.74180317.254800.575304.397003.45150HepG2CALR
TRIM38ENSG00000112343.8674.05270485.448000.473402.488901.57110HepG2CCAR1
TRIM38ENSG00000112343.8394.03410279.332700.496202.506601.76580HepG2CIRBP
TRIM38ENSG00000112343.8212.32360318.83710-0.586603.705502.52560HepG2YBX3
TRIM38ENSG00000112343.8447.50550264.072000.760904.535202.64540HepG2CSTF2T
TRIM38ENSG00000112343.8458.97490284.861400.688105.162304.26340HepG2DDX21
TRIM38ENSG00000112343.8609.47700340.406600.840207.275006.30490HepG2DDX3X
TRIM38ENSG00000112343.8801.85460569.988600.492304.008402.46460HepG2DDX47
TRIM38ENSG00000112343.8475.67140291.802200.704905.140904.12520HepG2DDX55
TRIM38ENSG00000112343.8480.06270304.351500.657402.893501.89300HepG2DDX59
TRIM38ENSG00000112343.81039.26250292.347501.8297031.5739029.82470HepG2DDX6
TRIM38ENSG00000112343.8378.37370262.168800.529202.447901.41150HepG2AGO1
TRIM38ENSG00000112343.8500.36990281.109100.831806.552405.66310HepG2EIF2S1
TRIM38ENSG00000112343.8430.81390246.467400.805605.785504.51290HepG2EIF3D
TRIM38ENSG00000112343.8399.98090271.371400.559603.543202.27330HepG2FASTKD2
TRIM38ENSG00000112343.8686.28830403.689900.765505.948904.86250HepG2FIP1L1
TRIM38ENSG00000112343.8322.85290228.305400.499802.771701.98500HepG2FUBP3
TRIM38ENSG00000112343.8577.36510349.638600.723504.528903.12230HepG2FUS
TRIM38ENSG00000112343.8406.15170290.753700.482102.459201.82990HepG2G3BP1
TRIM38ENSG00000112343.8718.51020472.135000.605704.055202.34870HepG2HNRNPAB
TRIM38ENSG00000112343.8458.68370350.155800.389402.575701.88290HepG2HNRNPF
TRIM38ENSG00000112343.8479.23820294.291600.703405.122004.19350HepG2HNRNPK
TRIM38ENSG00000112343.8569.73810431.672600.400303.813203.02980HepG2HNRNPL
TRIM38ENSG00000112343.8556.50060277.298201.004803.625202.50030HepG2IGF2BP3
TRIM38ENSG00000112343.8366.57910512.31830-0.482902.399701.63010HepG2LARP4
TRIM38ENSG00000112343.8460.03590257.952200.834504.147902.87190HepG2METAP2
TRIM38ENSG00000112343.8478.85190326.865000.550804.146903.16640HepG2MSI2
TRIM38ENSG00000112343.8442.57660345.662400.356502.277601.50260HepG2PARN
TRIM38ENSG00000112343.8419.61360291.089300.527503.923703.22770HepG2PCBP1
TRIM38ENSG00000112343.8794.74810513.016800.631403.394001.70040HepG2PNPT1
TRIM38ENSG00000112343.8246.04550322.33640-0.389602.127001.44120HepG2PRPF4
TRIM38ENSG00000112343.8355.57120225.274700.658404.348903.36000HepG2PRPF8
TRIM38ENSG00000112343.8537.06910296.169800.8586010.320609.39520HepG2PTBP1
TRIM38ENSG00000112343.8684.15380476.228800.522606.803505.95840HepG2PUM1
TRIM38ENSG00000112343.8424.47990335.973100.337302.179001.61690HepG2PUS1
TRIM38ENSG00000112343.8556.27950320.811200.794008.037507.05760HepG2QKI
TRIM38ENSG00000112343.8704.50230319.425001.141008.058506.89360HepG2RAVER1
TRIM38ENSG00000112343.8797.91800365.351101.1269018.8741016.97920HepG2RBM15
TRIM38ENSG00000112343.81072.57180464.400601.2075027.5629026.26490HepG2RBM22
TRIM38ENSG00000112343.8458.71530291.137100.655802.305201.68450HepG2RBM25
TRIM38ENSG00000112343.8435.42650306.967700.504203.487602.80520HepG2RECQL
TRIM38ENSG00000112343.8605.76610377.240600.683205.590604.66990HepG2RPLP0
TRIM38ENSG00000112343.8321.93860239.822100.424701.992401.46290HepG2RPS19
TRIM38ENSG00000112343.8463.98830222.860301.057808.913907.60870HepG2RRP9
TRIM38ENSG00000112343.8494.33190308.394700.680606.231205.40360HepG2SF3B4
TRIM38ENSG00000112343.8313.27540430.17740-0.457503.294502.54000HepG2SLBP
TRIM38ENSG00000112343.8566.35120325.621000.798405.670904.26520HepG2SMNDC1
TRIM38ENSG00000112343.8545.94320319.316100.773704.343803.35590HepG2SNRNP70
TRIM38ENSG00000112343.8941.45450524.518800.8438016.4254015.47240HepG2SRFBP1
TRIM38ENSG00000112343.8407.71310321.879500.340901.737501.33830HepG2SRSF1
TRIM38ENSG00000112343.8598.22120442.950900.433403.909303.18780HepG2SRSF5
TRIM38ENSG00000112343.8535.14080344.025000.637306.449405.45790HepG2SRSF7
TRIM38ENSG00000112343.8533.54990261.850701.0268015.3553014.24190HepG2SRSF9
TRIM38ENSG00000112343.8464.47800298.506700.637702.986101.73310HepG2SUB1
TRIM38ENSG00000112343.8557.01470289.268300.9452011.9374010.89880HepG2TAF15
TRIM38ENSG00000112343.8296.45830586.24080-0.983704.847503.46660HepG2TBRG4
TRIM38ENSG00000112343.8433.97030265.850700.706905.867704.66290HepG2TIA1
TRIM38ENSG00000112343.8917.72020345.412901.4096023.1610021.28320HepG2U2AF1
TRIM38ENSG00000112343.8441.66430339.116800.381102.627801.94390HepG2UPF1
TRIM38ENSG00000112343.8571.73750314.083900.864105.652503.84850HepG2XRCC5
TRIM38ENSG00000112343.8497.56300792.24730-0.671109.319208.35630K562AGGF1
TRIM38ENSG00000112343.8679.27420870.48320-0.357802.693501.72820K562AKAP8
TRIM38ENSG00000112343.8496.35540824.35030-0.731908.323107.12860K562AKAP8L
TRIM38ENSG00000112343.8885.746301135.64580-0.358503.403802.32010K562CELF1
TRIM38ENSG00000112343.8474.25720701.80390-0.565406.708305.75830K562DDX47
TRIM38ENSG00000112343.8474.14420300.493000.657904.818303.59870K562EFTUD2
TRIM38ENSG00000112343.81283.67570494.397001.3764040.9940038.86620K562EIF2S2
TRIM38ENSG00000112343.8334.48110472.28640-0.497703.670902.76270K562EIF3G
TRIM38ENSG00000112343.8596.24460368.646800.693604.266603.24790K562EIF4A3
TRIM38ENSG00000112343.8641.44950404.495700.665105.685004.45100K562FMR1
TRIM38ENSG00000112343.8509.26930342.850900.570703.706302.63450K562FTO
TRIM38ENSG00000112343.8570.73880385.638600.565503.246002.47070K562G3BP2
TRIM38ENSG00000112343.8380.72430515.79510-0.438103.217401.98380K562GLRX3
TRIM38ENSG00000112343.8564.47100379.547200.572504.404203.40840K562GPKOW
TRIM38ENSG00000112343.8328.48100449.25350-0.451702.991201.87300K562HNRNPA1
TRIM38ENSG00000112343.8807.15380634.233500.347702.515301.51150K562HNRNPL
TRIM38ENSG00000112343.81217.17260631.957300.9455014.0949012.36170K562HSPD1
TRIM38ENSG00000112343.8643.74140874.90800-0.442703.353802.43560K562KIF1C
TRIM38ENSG00000112343.8660.03940837.44850-0.343402.551201.53340K562MAK16
TRIM38ENSG00000112343.8784.30510980.10870-0.321502.608201.72920K562MBNL1
TRIM38ENSG00000112343.8470.69350686.97940-0.545503.177502.21950K562NAA15
TRIM38ENSG00000112343.8557.22480368.159500.597805.003503.34450K562NCBP2
TRIM38ENSG00000112343.8480.88420602.50940-0.325302.562801.84090K562NSUN2
TRIM38ENSG00000112343.8337.57610654.79280-0.955804.709503.32300K562PABPN1
TRIM38ENSG00000112343.8643.95750292.412901.1389013.2984011.64720K562PRPF8
TRIM38ENSG00000112343.81285.446401007.570000.351302.409601.65010K562PUF60
TRIM38ENSG00000112343.81358.514501050.056600.371503.845602.71000K562PUM2
TRIM38ENSG00000112343.8393.69300817.66470-1.0544014.1139012.93000K562PUS1
TRIM38ENSG00000112343.8563.07940367.987000.613602.816501.38420K562RAVER1
TRIM38ENSG00000112343.8464.02370796.57890-0.779606.814105.91050K562RBM15
TRIM38ENSG00000112343.8949.67790517.481500.8758011.9619010.03750K562RBM22
TRIM38ENSG00000112343.8499.05570360.977700.467202.433901.52700K562SF3B1
TRIM38ENSG00000112343.8632.42710433.679100.544204.436302.30320K562SND1
TRIM38ENSG00000112343.8676.78550374.020100.855507.968905.95910K562U2AF1
TRIM38ENSG00000112343.8849.03380386.212301.1363021.0769018.82010K562U2AF2
TRIM38ENSG00000112343.8428.96450299.684300.517303.030201.95860K562UCHL5
TRIM38ENSG00000112343.8807.56460638.855900.338003.234102.46000K562UPF1
TRIM38ENSG00000112343.8355.16240568.47470-0.678608.438207.03880K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRIM38 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TRIM38 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TRIM38 is not avaliable on ENCORE database.