TRAK1

General Information

Gene Name       : TRAK1
Gene ID             : ENSG00000182606.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRAK1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRAK1ENSG00000182606.1415.0819.2917.18ENCSR000AEF
HepG2TRAK1ENSG00000182606.1424.2321.3022.77ENCSR985KAT
K562TRAK1ENSG00000182606.1414.7014.3514.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRAK1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRAK1 RNA is bound by 32 proteins.  







eCLIP assay for TRAK1 is not avaliable on ENCORE database.





32 proteins are bound to TRAK1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr34221834242218382+3'-UTR,CDS3.091934.09741HepG2PPIG
chr34222617742226220+3'-UTR,CDS3.198834.02291HepG2GRWD1
chr34225389542253954+3'-UTR,intron-Distal3.257173.07801K562UPF1
chr34222622042226297+3'-UTR,CDS,intron-Proximal3.142377.65887HepG2GRWD1
chr34221830742218344+3'-UTR,CDS3.580343.87469HepG2BCLAF1
chr34222616942226348+3'-UTR,CDS,intron-Proximal3.898437.90300K562BUD13
chr34222617642226300+3'-UTR,CDS,intron-Proximal3.886878.88619K562UCHL5
chr34221830742218344+3'-UTR,CDS3.891863.38114HepG2GRWD1
chr34226538942265453+3'-UTR6.5347987.04688K562PUM2
chr34222621142226348+3'-UTR,CDS,intron-Proximal3.056037.82108HepG2BUD13
chr34221834442218384+3'-UTR,CDS,intron-Proximal3.300604.27261HepG2GRWD1
chr34220168742201763+5'-UTR,intron-Distal3.337364.02244HepG2NCBP2
chr34223059442230692+CDS,intron-Proximal3.537626.18341HepG2PRPF8
chr34225126642251350+CDS4.937448.17630HepG2GRWD1
chr34223456942234673+CDS4.955739.25096K562DDX24
chr34216702342167102+CDS3.005944.38519K562BUD13
chr34224067942240739+CDS5.481966.53290K562DDX24
chr34222953642229571+CDS,intron-Proximal4.057414.28220HepG2GRWD1
chr34223050742230556+CDS,intron-Proximal4.703955.24929K562ZNF622
chr34225122042251274+CDS,intron-Proximal4.618604.48002K562AQR
chr34223307642233132+CDS,intron-Proximal3.072655.41277K562UCHL5
chr34223531342235392+CDS,intron-Distal,intron-Proximal3.0223913.25965HepG2PPIG
chr34224392842244015+CDS4.157733.67707K562METAP2
chr34224423142244293+CDS,intron-Proximal4.153709.68077HepG2PRPF8
chr34223059542230626+CDS,intron-Proximal3.167214.42661HepG2PPIG
chr34222953442229638+CDS,intron-Proximal3.994805.85226K562UCHL5
chr34226443242264471+CDS,intron-Proximal3.791043.56019HepG2GRWD1
chr34224067042240745+CDS3.340356.45347HepG2GRWD1
chr34225141342251469+CDS3.142615.03211K562AQR
chr34224067242240742+CDS3.374736.54857HepG2PPIG
chr34225161042251623+CDS,intron-Distal4.372823.02457HepG2BCLAF1
chr34223531242235388+CDS,intron-Distal,intron-Proximal3.891476.33304K562BUD13
chr34223059642230622+CDS,intron-Proximal5.324386.35227HepG2BUD13
chr34216697442167086+CDS4.136078.34856K562YBX3
chr34223531442235360+CDS,intron-Distal,intron-Proximal5.515525.93845K562DDX24
chr34224392542243975+CDS,intron-Proximal3.754074.76554HepG2BCLAF1
chr34224250942242546+CDS4.430563.71570HepG2BCLAF1
chr34224426342244289+CDS,intron-Proximal4.942345.65342K562AQR
chr34223057342230617+CDS,intron-Proximal4.163254.12139K562DDX24
chr34223639242236467+CDS,intron-Proximal4.541814.35676HepG2PRPF8
chr34224392642244048+CDS,intron-Proximal3.7130712.94827HepG2PPIG
chr34226443342264451+CDS,intron-Proximal3.393963.93645HepG2PPIG
chr34223304642233130+CDS,intron-Proximal3.254539.65606HepG2PPIG
chr34224402242244101+CDS3.548263.73423K562UCHL5
chr34224250942242548+CDS,intron-Proximal3.343605.21025HepG2PPIG
chr34223303542233082+CDS,intron-Proximal4.246754.55323HepG2BUD13
chr34225126442251325+CDS4.318703.67707K562METAP2
chr34222627942226311+CDS,intron-Proximal3.094185.62171K562AQR
chr34226096842261024+CDS,intron-Proximal3.056235.97392HepG2U2AF2
chr34224074442240792+CDS,intron-Proximal5.082405.65342K562AQR
chr34223058142230627+CDS,intron-Proximal3.032393.70975K562UCHL5
chr34222953442229572+CDS,intron-Proximal4.0421610.14097HepG2PPIG
chr34223055642230619+CDS,intron-Proximal4.245186.47664K562ZNF622
chr34223050742230573+CDS,intron-Proximal5.446775.34688K562DDX24
chr34223529742235411+CDS,intron-Distal,intron-Proximal3.354205.36626HepG2EFTUD2
chr34224424442244263+CDS,intron-Proximal3.357384.28285K562AQR
chr34223456642234661+CDS,intron-Proximal3.144586.65384K562UCHL5
chr34224066442240742+CDS,intron-Proximal3.326714.38519K562BUD13
chr34223308242233162+CDS,intron-Proximal3.630285.76243HepG2BUD13
chr34209140042091508+intron-Distal3.955194.28420HepG2HNRNPM
chr34206747142067571+intron-Distal6.4223421.40045HepG2PTBP1
chr34208476242084849+intron-Distal6.2096516.02947HepG2PCBP2
chr34217574242175812+intron-Distal4.478094.52538HepG2PTBP1
chr34208497242085020+intron-Distal3.411564.39142HepG2PCBP2
chr34207768342077715+intron-Distal3.082983.10640HepG2SUGP2
chr34207565242075725+intron-Distal3.698298.74865HepG2SUGP2
chr34226044342260490+intron-Distal4.048883.05187HepG2QKI
chr34213953142139694+intron-Distal4.157489.33956HepG2PCBP2
chr34207716242077242+intron-Distal3.659277.27760HepG2SUGP2
chr34209140142091524+intron-Distal3.592456.06808K562HNRNPM
chr34210279442102907+intron-Distal4.066483.19026HepG2HNRNPL
chr34225456342254632+intron-Distal3.164733.25288HepG2HNRNPC
chr34213961742139699+intron-Distal4.243305.16181K562PTBP1
chr34207561142075652+intron-Distal4.190054.03915HepG2SUGP2
chr34213951542139610+intron-Distal5.103625.41368HepG2PTBP1
chr34209159342091654+intron-Distal3.521413.18845HepG2HNRNPM
chr34207649742076581+intron-Distal4.446515.04209K562MATR3
chr34208484942084972+intron-Distal5.5171120.20057HepG2PCBP2
chr34217566342175787+intron-Distal4.347535.13071HepG2HNRNPK
chr34218038042180468+intron-Distal5.8418212.35284K562EIF4G2
chr34217572442175825+intron-Distal3.865873.43867K562CSTF2T
chr34206153442061665+intron-Distal4.169614.12480HepG2HNRNPM
chr34208606042086216+intron-Distal3.958653.27946HepG2HNRNPM
chr34224333242243442+intron-Distal4.900335.84190HepG2HNRNPL
chr34208494242084991+intron-Distal4.928285.39854K562PTBP1
chr34208494442085007+intron-Distal4.399434.07628HepG2PTBP1
chr34208979542089857+intron-Distal4.225504.33299K562ILF3
chr34208514242085230+intron-Distal4.569965.31171K562HNRNPM
chr34215891742159046+intron-Distal5.393087.41017K562PTBP1
chr34223927542239334+intron-Distal4.654433.12827HepG2U2AF2
chr34208487742084931+intron-Distal3.690894.12870K562PTBP1
chr34207746942077518+intron-Distal4.430985.11328HepG2SUGP2
chr34208486742084944+intron-Distal3.821404.78196HepG2PTBP1
chr34225104642251117+intron-Distal3.499143.95921HepG2U2AF2
chr34208470242084752+intron-Distal5.036107.79030HepG2PCBP2
chr34207540742075501+intron-Distal4.088738.31041HepG2SUGP2
chr34217573142175824+intron-Distal5.3632011.42348K562ILF3
chr34206715842067215+intron-Distal4.294074.70434HepG2RBFOX2
chr34226016142260198+intron-Distal3.192604.40834HepG2QKI
chr34206752242067645+intron-Distal6.3686327.86048K562PTBP1
chr34213951342139604+intron-Distal4.801907.56720K562PTBP1
chr34213952342139658+intron-Distal3.294513.71597K562MATR3
chr34207556342075699+intron-Distal5.042926.43853HepG2MATR3
chr34213010242130151+intron-Distal4.091593.84389HepG2SUGP2
chr34210185542101980+intron-Distal3.886683.15816HepG2PRPF4
chr34207796342078007+intron-Distal4.568415.84463HepG2SUGP2
chr34215891442159055+intron-Distal4.279465.36899HepG2PTBP1
chr34218390642183982+intron-Distal3.058033.35050HepG2SUGP2
chr34213961042139686+intron-Distal4.614804.40847HepG2PTBP1
chr34217571042175846+intron-Distal6.5433522.28433HepG2PCBP2
chr34208486642084954+intron-Distal3.213963.37821K562ILF3
chr34210347842103544+intron-Distal5.315506.88699HepG2XPO5
chr34207652542076586+intron-Distal4.459255.15027HepG2MATR3
chr34206746842067522+intron-Distal5.776738.93487K562PTBP1
chr34206757142067637+intron-Distal5.1773613.26087HepG2PTBP1
chr34207637642076414+intron-Distal3.304793.10640HepG2SUGP2
chr34219137642191463+intron-Distal4.419065.44904K562TARDBP
chr34222631142226366+intron-Proximal5.566319.41643K562AQR
chr34223298142233037+intron-Proximal3.922563.96535HepG2AQR
chr34205560842055658+intron-Proximal4.214508.79285K562AQR
chr34205558242055656+intron-Proximal4.950555.68502HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRAK1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRAK1 is not available on ENCORE database.

  • 93 RBPs can affect the levels of TRAK1.  








The Knockdown/knockout RNA-Seq assay for TRAK1 is not available on ENCORE database.





93 RBPs can affect the gene expression of TRAK1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRAK1ENSG00000182606.101735.007602144.30740-0.305602.253201.35330HepG2ADAR
TRAK1ENSG00000182606.102554.635603164.18410-0.308702.871601.44080HepG2ATP5C1
TRAK1ENSG00000182606.105644.261204208.168600.4235010.135308.95770HepG2AUH
TRAK1ENSG00000182606.103016.017402496.675800.272502.771001.99830HepG2CALR
TRAK1ENSG00000182606.103095.090804023.45670-0.378502.425801.51910HepG2CCAR1
TRAK1ENSG00000182606.101557.665802820.41400-0.8565013.6702012.10090HepG2CIRBP
TRAK1ENSG00000182606.102640.487402956.31450-0.163002.098701.50790HepG2CKAP4
TRAK1ENSG00000182606.101851.632902198.97330-0.248002.503901.53890HepG2YBX3
TRAK1ENSG00000182606.103525.486903000.674700.232402.962802.30170HepG2CELF1
TRAK1ENSG00000182606.103740.114603226.371600.213103.675902.84130HepG2DAZAP1
TRAK1ENSG00000182606.102379.507902734.76480-0.200802.701801.87730HepG2DDX19B
TRAK1ENSG00000182606.101663.043002202.01560-0.405006.035704.38870HepG2DDX1
TRAK1ENSG00000182606.101557.984602198.47770-0.496806.740005.32130HepG2DDX24
TRAK1ENSG00000182606.102534.871003436.76070-0.439103.979703.24090HepG2DDX3X
TRAK1ENSG00000182606.102787.792702002.344700.477303.751202.86660HepG2DDX55
TRAK1ENSG00000182606.103588.191002406.247100.576403.164202.11900HepG2DDX59
TRAK1ENSG00000182606.102153.683003004.77610-0.480505.260503.90570HepG2DDX5
TRAK1ENSG00000182606.101715.452602082.55000-0.279802.221101.34320HepG2DHX30
TRAK1ENSG00000182606.102237.040502829.01130-0.338705.607804.70600HepG2DKC1
TRAK1ENSG00000182606.101541.139002159.19050-0.486508.400307.22780HepG2DNAJC21
TRAK1ENSG00000182606.101908.189102140.17720-0.165501.930301.36790HepG2DNAJC2
TRAK1ENSG00000182606.101928.251102642.99120-0.454904.387103.25210HepG2EEF2
TRAK1ENSG00000182606.101510.072502145.54230-0.506705.079303.88110HepG2EIF3D
TRAK1ENSG00000182606.101577.116402121.36480-0.427705.241303.80850HepG2EIF3G
TRAK1ENSG00000182606.102314.020103136.16420-0.438603.462202.74870HepG2EIF4A3
TRAK1ENSG00000182606.103917.489803183.091500.299405.183604.09540HepG2EIF4G1
TRAK1ENSG00000182606.102107.747003037.54880-0.527206.614005.01250HepG2ESF1
TRAK1ENSG00000182606.104206.748204831.62180-0.199802.865102.25510HepG2ETF1
TRAK1ENSG00000182606.102067.144402889.47610-0.483206.616405.32560HepG2EWSR1
TRAK1ENSG00000182606.102859.920102140.646300.417804.942503.48200HepG2FASTKD2
TRAK1ENSG00000182606.101509.026401910.33500-0.340202.646601.77130HepG2GEMIN5
TRAK1ENSG00000182606.101932.917102401.89720-0.313402.077601.51880HepG2GPKOW
TRAK1ENSG00000182606.102210.347002823.04990-0.353006.191204.80150HepG2HDGF
TRAK1ENSG00000182606.101638.144002179.87670-0.412204.364803.57800HepG2HNRNPA1
TRAK1ENSG00000182606.103529.641002965.171500.251303.524602.48860HepG2HNRNPA2B1
TRAK1ENSG00000182606.101621.114902424.72740-0.580807.902106.77680HepG2HNRNPC
TRAK1ENSG00000182606.103136.185702525.945200.312104.796303.88560HepG2HNRNPF
TRAK1ENSG00000182606.102389.705602973.35440-0.315302.651801.96740HepG2HNRNPK
TRAK1ENSG00000182606.101776.850202442.93540-0.459305.927704.59940HepG2HNRNPM
TRAK1ENSG00000182606.102959.379302408.695300.296904.891004.10430HepG2HNRNPU
TRAK1ENSG00000182606.103084.049902487.327100.310103.299002.51380HepG2IGF2BP1
TRAK1ENSG00000182606.103612.505602983.828500.275701.932201.35880HepG2IGF2BP2
TRAK1ENSG00000182606.102197.234602460.39950-0.163201.939001.31170HepG2ILF2
TRAK1ENSG00000182606.102215.945303166.02890-0.514805.191404.29930HepG2MAGOH
TRAK1ENSG00000182606.102223.420902865.57480-0.366004.104703.12790HepG2MSI2
TRAK1ENSG00000182606.101513.706302032.53860-0.425204.154703.24310HepG2NSUN2
TRAK1ENSG00000182606.103428.058502938.374100.222303.098802.46190HepG2PCBP1
TRAK1ENSG00000182606.101482.715302148.36060-0.535009.782308.44020HepG2PPIL4
TRAK1ENSG00000182606.101729.140302718.34450-0.6527017.3929015.73050HepG2PRPF4
TRAK1ENSG00000182606.104278.033502990.017400.5167013.6615012.62770HepG2PTBP1
TRAK1ENSG00000182606.101887.225303054.00650-0.6944012.2519011.11670HepG2PUF60
TRAK1ENSG00000182606.102923.954103241.99190-0.149001.911401.39870HepG2PUM1
TRAK1ENSG00000182606.102487.392503239.60570-0.381205.085204.18950HepG2PUM2
TRAK1ENSG00000182606.103909.851903238.024100.271903.357002.67810HepG2QKI
TRAK1ENSG00000182606.105248.180103723.815800.494908.958007.53290HepG2RBM15
TRAK1ENSG00000182606.101382.733702293.07600-0.729808.314406.48710HepG2RCC2
TRAK1ENSG00000182606.102526.580103327.50930-0.397307.563606.74780HepG2NELFE
TRAK1ENSG00000182606.103619.575102721.177900.411504.402303.57080HepG2RPLP0
TRAK1ENSG00000182606.102148.750201527.772800.492003.974203.05430HepG2RRP9
TRAK1ENSG00000182606.101865.445002145.03920-0.201502.432501.82200HepG2SAFB2
TRAK1ENSG00000182606.102180.116403024.82730-0.472403.304102.56540HepG2SF3A3
TRAK1ENSG00000182606.103576.709603112.793300.200302.606102.02900HepG2SF3B4
TRAK1ENSG00000182606.102224.776202501.46070-0.169102.209601.62430HepG2SMN1
TRAK1ENSG00000182606.103440.516502524.401600.446602.147601.46230HepG2SNRNP70
TRAK1ENSG00000182606.106315.689504561.109400.4695015.1455014.22220HepG2SRFBP1
TRAK1ENSG00000182606.102657.485503249.16430-0.290004.718004.14240HepG2SRSF1
TRAK1ENSG00000182606.103203.761502441.357800.392002.676401.69370HepG2SRSF3
TRAK1ENSG00000182606.103470.121703015.421500.202502.662902.04580HepG2SRSF5
TRAK1ENSG00000182606.103514.015502481.684500.5017012.0368010.76230HepG2SRSF7
TRAK1ENSG00000182606.103011.552602643.438800.188002.445301.91940HepG2SRSF9
TRAK1ENSG00000182606.103400.744603960.07060-0.219703.227402.68320HepG2SSB
TRAK1ENSG00000182606.102818.724801993.249200.499804.213203.40300HepG2SUPV3L1
TRAK1ENSG00000182606.102450.487902920.70290-0.253202.778202.21690HepG2TAF15
TRAK1ENSG00000182606.103800.313102340.431300.6992016.1265015.09930HepG2TIAL1
TRAK1ENSG00000182606.101934.250202682.56600-0.4718011.029209.80430HepG2UPF1
TRAK1ENSG00000182606.101671.711302589.90190-0.6316015.3702014.12880HepG2UTP3
TRAK1ENSG00000182606.103268.203102392.037700.450202.748001.48860HepG2XRCC5
TRAK1ENSG00000182606.101376.178301962.13690-0.511805.079804.10520HepG2XRN2
TRAK1ENSG00000182606.103170.688002682.658500.241004.039603.25200HepG2ZC3H8
TRAK1ENSG00000182606.102037.154302950.29970-0.5343014.4188013.41260HepG2ZNF622
TRAK1ENSG00000182606.101981.191301569.889600.335605.142904.40910K562AGGF1
TRAK1ENSG00000182606.101590.059702202.17910-0.469905.513703.67950K562APOBEC3C
TRAK1ENSG00000182606.10891.271901381.42470-0.632207.615705.60380K562CIRBP
TRAK1ENSG00000182606.101016.948701315.56750-0.371403.420402.24620K562DDX3X
TRAK1ENSG00000182606.101461.352002081.22010-0.5101010.249109.08550K562DDX47
TRAK1ENSG00000182606.10778.429101161.34010-0.577204.501602.83540K562EEF2
TRAK1ENSG00000182606.10450.69480739.15330-0.713703.808102.60630K562EIF3A
TRAK1ENSG00000182606.10799.583001201.01210-0.586904.890403.46830K562EIF3D
TRAK1ENSG00000182606.10658.49740918.43990-0.480004.962003.91230K562EIF3G
TRAK1ENSG00000182606.101164.359801429.38270-0.295903.005702.37870K562FXR1
TRAK1ENSG00000182606.10951.787601186.08120-0.317502.483701.91450K562HNRNPC
TRAK1ENSG00000182606.101203.617201648.28690-0.453604.309303.32250K562HSPD1
TRAK1ENSG00000182606.102366.752301942.014300.285302.844601.91920K562MBNL1
TRAK1ENSG00000182606.101909.136601650.969700.209502.279601.54380K562MTPAP
TRAK1ENSG00000182606.10794.810901091.78120-0.458003.815802.93590K562PRPF8
TRAK1ENSG00000182606.102141.418601619.886200.402603.912003.28210K562PUS1
TRAK1ENSG00000182606.101860.993601578.468300.237402.373501.81730K562RBM15
TRAK1ENSG00000182606.10752.43850970.53700-0.367202.899701.88460K562RCC2
TRAK1ENSG00000182606.10674.264101111.92520-0.721707.100305.77600K562RPS19
TRAK1ENSG00000182606.10863.603101110.35810-0.362602.311801.40670K562RPS3
TRAK1ENSG00000182606.10854.074801060.94150-0.312902.570701.79580K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRAK1 is not available on ENCORE database.





7 RBPs can affect the splicing of TRAK1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRAK1ENSG00000182606.10chr3+4226070842260882422512584225147742260985422610880.255000.000040.00120includedHepG2U2AF1
SETRAK1ENSG00000182606.10chr3+4226070842260882422512584225147742260985422610880.244000.000010.00258includedHepG2TBRG4
SETRAK1ENSG00000182606.10chr3+422587344225890142251258422514144226098542261088-0.129000.005580.05791excludedHepG2U2AF2
SETRAK1ENSG00000182606.10chr3+4226070842260882422512584225147742260985422610880.303000.000230.02131includedHepG2FTO
A5SSTRAK1ENSG00000182606.10chr3+4225128742251477422512874225141442260985422610880.222000.000060.00894longerK562AGGF1
A5SSTRAK1ENSG00000182606.10chr3+422512584225147742251258422514144226098542261088-0.249000.000020.00702shorterHepG2HNRNPC
MXETRAK1ENSG00000182606.10chr3+4224066842240745422423094224254642236295422364334224392742244244-0.127000.001770.051002includedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRAK1 is not avaliable on ENCORE database.