SNX9

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNX9	ENSG00000130340.15	0.19	0.34	0.27	ENCSR000AEF
HepG2	SNX9	ENSG00000130340.15	18.31	22.52	20.41	ENCSR985KAT
K562	SNX9	ENSG00000130340.15	57.43	54.93	56.18	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNX9 is not avaliable on ENCORE database.

Proteins bound to RNA

SNX9 RNA is bound by 54 proteins.

eCLIP assay for SNX9 is not avaliable on ENCORE database.

54 proteins are bound to SNX9 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	158364341	158364409	+	3'-UTR	3.48588	3.36518	K562	IGF2BP1
chr6	158364334	158364395	+	3'-UTR	5.60484	56.10607	K562	PUM2
chr6	158365467	158365515	+	3'-UTR	5.97124	61.31779	K562	PUM2
chr6	158365393	158365467	+	3'-UTR	4.42947	52.99935	K562	PUM2
chr6	158365543	158365653	+	3'-UTR	4.09414	3.88068	HepG2	CSTF2
chr6	158364472	158364533	+	3'-UTR	4.20465	3.72865	HepG2	LIN28B
chr6	158363812	158363880	+	3'-UTR,CDS,intron-Proximal	3.61713	7.43659	HepG2	U2AF2
chr6	158364803	158364824	+	3'-UTR	4.36937	4.96452	K562	YBX3
chr6	158365105	158365238	+	3'-UTR	4.06094	11.40933	K562	IGF2BP2
chr6	158365110	158365234	+	3'-UTR	4.14893	10.31850	HepG2	IGF2BP1
chr6	158364232	158364275	+	3'-UTR	4.31192	3.09815	K562	IGF2BP1
chr6	158364824	158364844	+	3'-UTR	3.46061	4.30677	K562	YBX3
chr6	158364455	158364536	+	3'-UTR	5.13453	9.30647	K562	LIN28B
chr6	158244305	158244383	+	5'-UTR	3.69853	8.94209	HepG2	DDX3X
chr6	158244344	158244395	+	5'-UTR	3.63182	3.21586	K562	DDX52
chr6	158348235	158348242	+	CDS	4.39110	4.72838	K562	UCHL5
chr6	158294131	158294206	+	CDS,intron-Proximal	3.35795	9.60326	HepG2	BCLAF1
chr6	158288610	158288664	+	CDS	3.51098	3.69997	K562	GRWD1
chr6	158330664	158330741	+	CDS,intron-Proximal	3.00870	5.01844	HepG2	U2AF2
chr6	158317840	158317915	+	CDS,intron-Proximal	4.43251	8.98750	HepG2	U2AF2
chr6	158294125	158294192	+	CDS,intron-Proximal	3.67668	7.61895	K562	U2AF1
chr6	158288523	158288591	+	CDS,intron-Proximal	4.14279	9.19405	K562	SF3B4
chr6	158294118	158294206	+	CDS,intron-Proximal	3.29594	6.61846	K562	U2AF2
chr6	158296091	158296186	+	CDS	3.44682	5.60389	HepG2	PPIG
chr6	158296203	158296279	+	CDS,intron-Proximal	3.11046	6.09777	K562	PRPF8
chr6	158294163	158294207	+	CDS	3.33248	11.17259	K562	ZNF622
chr6	158288618	158288665	+	CDS	3.48577	8.56897	K562	DDX24
chr6	158288627	158288665	+	CDS	3.74605	10.82249	K562	UCHL5
chr6	158363805	158363864	+	CDS,intron-Proximal	4.13790	7.78906	K562	GPKOW
chr6	158288619	158288667	+	CDS,intron-Proximal	3.61184	7.83567	HepG2	BCLAF1
chr6	158294183	158294250	+	CDS,intron-Proximal	3.87296	5.34978	HepG2	PRPF8
chr6	158358420	158358497	+	CDS,intron-Proximal	4.64841	3.59236	HepG2	AQR
chr6	158296082	158296086	+	CDS,intron-Proximal	4.91919	3.59565	K562	DDX24
chr6	158349690	158349728	+	CDS	3.55925	4.19763	K562	DDX24
chr6	158353216	158353265	+	CDS,intron-Proximal	3.51314	5.01422	K562	GPKOW
chr6	158349733	158349807	+	CDS,intron-Proximal	5.07707	11.12698	K562	AQR
chr6	158357014	158357070	+	CDS	3.52851	5.77413	K562	DDX24
chr6	158362005	158362025	+	CDS,intron-Proximal	4.02731	9.59600	K562	AQR
chr6	158330938	158330996	+	CDS,intron-Proximal	4.98682	30.57180	K562	QKI
chr6	158330927	158330977	+	CDS,intron-Proximal	3.85106	3.07225	K562	U2AF1
chr6	158363791	158363855	+	CDS,intron-Proximal	4.47385	5.47926	K562	AQR
chr6	158342584	158342627	+	CDS	3.11679	4.28697	K562	ZNF622
chr6	158330890	158330976	+	CDS,intron-Proximal	4.06195	13.49547	K562	SF3B4
chr6	158357002	158357073	+	CDS,intron-Proximal	3.15707	4.66004	K562	GRWD1
chr6	158363813	158363862	+	CDS,intron-Proximal	3.02591	5.96307	K562	BUD13
chr6	158317924	158317961	+	CDS	3.03930	3.84692	K562	UCHL5
chr6	158348087	158348186	+	CDS,intron-Proximal	3.21449	8.05533	K562	SF3B4
chr6	158327126	158327199	+	CDS,intron-Proximal	3.63282	5.62662	K562	BUD13
chr6	158330762	158330823	+	CDS,intron-Proximal	5.60204	22.75077	K562	QKI
chr6	158323000	158323031	+	CDS	4.68336	5.78736	K562	ZNF622
chr6	158363813	158363863	+	CDS,intron-Proximal	3.49802	3.46826	K562	U2AF1
chr6	158291706	158291785	+	intron-Distal	4.41183	9.92249	HepG2	AGGF1
chr6	158327347	158327370	+	intron-Distal	3.98617	7.99418	K562	KHSRP
chr6	158291512	158291569	+	intron-Distal	4.42772	16.13626	HepG2	HNRNPL
chr6	158244700	158244751	+	intron-Distal	4.62519	5.77834	HepG2	XRN2
chr6	158270832	158270909	+	intron-Distal	4.30541	3.97018	HepG2	HNRNPM
chr6	158303025	158303105	+	intron-Distal	3.21211	4.08412	K562	RBM15
chr6	158291415	158291479	+	intron-Distal	4.65040	25.43341	HepG2	HNRNPL
chr6	158258357	158258445	+	intron-Distal	3.29662	8.24998	K562	KHSRP
chr6	158295725	158295805	+	intron-Distal	3.81904	6.87274	K562	HNRNPL
chr6	158291267	158291345	+	intron-Distal	4.43185	14.78800	HepG2	HNRNPL
chr6	158251517	158251642	+	intron-Distal	6.21410	34.15774	K562	HNRNPM
chr6	158291939	158292000	+	intron-Distal	4.12062	4.48692	K562	YBX3
chr6	158244539	158244648	+	intron-Distal,intron-Proximal	4.21677	16.17391	HepG2	EFTUD2
chr6	158252263	158252306	+	intron-Distal	4.39473	4.32882	HepG2	MATR3
chr6	158337924	158337974	+	intron-Distal	3.19820	3.59301	K562	HNRNPM
chr6	158291332	158291393	+	intron-Distal	4.10756	6.96499	HepG2	XPO5
chr6	158291100	158291181	+	intron-Distal	4.34070	15.20048	HepG2	HNRNPL
chr6	158327579	158327649	+	intron-Distal	4.02396	8.55611	K562	KHSRP
chr6	158252325	158252368	+	intron-Distal	4.69008	4.48560	K562	EXOSC5
chr6	158252822	158252875	+	intron-Distal	6.14064	18.21973	K562	HNRNPM
chr6	158244692	158244801	+	intron-Distal	3.68042	9.20036	HepG2	NKRF
chr6	158291011	158291086	+	intron-Distal	4.25090	23.63671	K562	HNRNPL
chr6	158261244	158261344	+	intron-Distal	3.82847	3.84001	K562	HNRNPM
chr6	158252786	158252863	+	intron-Distal	3.23423	5.20425	HepG2	MATR3
chr6	158291853	158291876	+	intron-Distal	6.12606	56.41416	K562	AGGF1
chr6	158341702	158341757	+	intron-Distal	3.95031	3.04224	HepG2	SUGP2
chr6	158260165	158260290	+	intron-Distal	3.32585	3.50045	HepG2	SFPQ
chr6	158363677	158363797	+	intron-Distal,intron-Proximal	4.17119	13.59642	K562	KHSRP
chr6	158327350	158327411	+	intron-Distal	3.40517	3.54718	K562	PRPF8
chr6	158290188	158290281	+	intron-Distal	3.96686	3.11802	K562	HNRNPK
chr6	158291595	158291631	+	intron-Distal	6.38486	57.78125	K562	AGGF1
chr6	158301589	158301686	+	intron-Distal	3.96305	6.39777	K562	PTBP1
chr6	158291180	158291192	+	intron-Distal	5.96551	71.11802	K562	AGGF1
chr6	158290957	158291072	+	intron-Distal	6.65084	400.00000	K562	AGGF1
chr6	158317756	158317811	+	intron-Distal,intron-Proximal	3.32502	4.30679	K562	KHSRP
chr6	158245065	158245107	+	intron-Distal	4.27228	3.30687	K562	EXOSC5
chr6	158252918	158253010	+	intron-Distal	3.36215	6.83596	K562	EXOSC5
chr6	158291416	158291512	+	intron-Distal	5.23874	41.67631	K562	HNRNPL
chr6	158291896	158291999	+	intron-Distal	4.32416	4.41148	HepG2	GTF2F1
chr6	158303044	158303148	+	intron-Distal	3.78324	8.33890	K562	UCHL5
chr6	158332981	158333025	+	intron-Distal	4.78031	4.33458	HepG2	XPO5
chr6	158291223	158291253	+	intron-Distal	4.65980	11.84085	K562	HNRNPL
chr6	158341008	158341088	+	intron-Distal	3.20295	4.58595	K562	SND1
chr6	158291168	158291231	+	intron-Distal	3.36455	6.64405	HepG2	AGGF1
chr6	158251961	158252001	+	intron-Distal	4.15223	3.45817	K562	MATR3
chr6	158251514	158251564	+	intron-Distal	5.04221	8.04096	K562	EXOSC5
chr6	158337909	158337984	+	intron-Distal	3.31500	3.09339	K562	MATR3
chr6	158252074	158252118	+	intron-Distal	3.24855	3.98203	K562	MATR3
chr6	158291639	158291681	+	intron-Distal	4.11865	11.26927	HepG2	HNRNPL
chr6	158340083	158340154	+	intron-Distal	4.42206	5.04209	K562	MATR3
chr6	158291849	158291877	+	intron-Distal	4.88257	16.66483	K562	HNRNPL
chr6	158291719	158291788	+	intron-Distal	6.14012	400.00000	K562	AGGF1
chr6	158270803	158270886	+	intron-Distal	3.07968	4.03213	K562	HNRNPM
chr6	158327527	158327699	+	intron-Distal	3.01831	3.66299	HepG2	KHSRP
chr6	158301184	158301253	+	intron-Distal	3.95378	6.51671	K562	HNRNPM
chr6	158268990	158269072	+	intron-Distal	3.09415	3.45841	K562	HNRNPK
chr6	158291192	158291223	+	intron-Distal	6.13877	400.00000	K562	AGGF1
chr6	158252422	158252464	+	intron-Distal	4.24970	4.28663	HepG2	SUGP2
chr6	158271167	158271243	+	intron-Distal	3.81274	5.50914	K562	EXOSC5
chr6	158341707	158341754	+	intron-Distal	4.14337	3.60235	HepG2	HNRNPM
chr6	158340182	158340265	+	intron-Distal	3.84752	6.23177	HepG2	SUGP2
chr6	158291720	158291778	+	intron-Distal	5.70377	26.38056	K562	HNRNPL
chr6	158291672	158291712	+	intron-Distal	3.53984	4.13833	K562	GTF2F1
chr6	158290840	158290921	+	intron-Distal	5.90319	400.00000	K562	AGGF1
chr6	158260290	158260343	+	intron-Distal	3.14810	3.46531	K562	KHSRP
chr6	158327257	158327347	+	intron-Distal,intron-Proximal	5.78592	14.53052	K562	KHSRP
chr6	158291288	158291387	+	intron-Distal	4.59176	6.92025	K562	YBX3
chr6	158252255	158252307	+	intron-Distal	3.52288	3.79878	K562	MATR3
chr6	158293009	158293043	+	intron-Distal	4.36063	3.42885	K562	AGGF1
chr6	158290940	158291008	+	intron-Distal	4.35248	27.36075	K562	HNRNPL
chr6	158252905	158252958	+	intron-Distal	4.20365	3.79026	K562	HNRNPM
chr6	158244571	158244663	+	intron-Distal,intron-Proximal	3.06452	8.00573	K562	DROSHA
chr6	158291663	158291729	+	intron-Distal	5.34906	5.81375	HepG2	XPO5
chr6	158291479	158291512	+	intron-Distal	5.46801	12.50513	HepG2	HNRNPL
chr6	158308078	158308141	+	intron-Distal	3.42800	4.48353	K562	LIN28B
chr6	158244545	158244630	+	intron-Distal,intron-Proximal	4.23648	4.16245	K562	DDX51
chr6	158251642	158251708	+	intron-Distal	3.85381	7.98764	K562	HNRNPM
chr6	158291345	158291416	+	intron-Distal	5.93603	49.48240	K562	HNRNPL
chr6	158317653	158317730	+	intron-Distal	3.77007	5.95946	K562	KHSRP
chr6	158244549	158244615	+	intron-Distal,intron-Proximal	4.05686	6.15802	K562	XRN2
chr6	158244557	158244634	+	intron-Distal,intron-Proximal	5.10470	11.22484	K562	GEMIN5
chr6	158270515	158270606	+	intron-Distal	3.90306	4.94813	HepG2	HNRNPM
chr6	158339420	158339483	+	intron-Distal	3.11768	4.56635	K562	KHSRP
chr6	158291879	158291971	+	intron-Distal	4.73819	26.18222	HepG2	HNRNPL
chr6	158291353	158291419	+	intron-Distal	5.62289	12.82625	HepG2	AGGF1
chr6	158273425	158273504	+	intron-Distal	4.07952	5.00478	HepG2	PCBP2
chr6	158288866	158288969	+	intron-Distal	3.84426	5.14864	K562	KHSRP
chr6	158266933	158266999	+	intron-Distal	3.97875	3.99137	K562	NONO
chr6	158252538	158252609	+	intron-Distal	4.34329	5.04209	K562	MATR3
chr6	158244759	158244808	+	intron-Distal	4.43014	6.63111	HepG2	XRN2
chr6	158251519	158251545	+	intron-Distal	4.17444	3.62238	HepG2	MATR3
chr6	158290870	158290941	+	intron-Distal	3.29567	5.29595	K562	GTF2F1
chr6	158320934	158321021	+	intron-Distal	4.20046	8.92807	K562	TARDBP
chr6	158253647	158253729	+	intron-Distal	3.86838	3.06194	K562	ILF3
chr6	158244667	158244749	+	intron-Distal	4.04876	8.63473	K562	XRN2
chr6	158291515	158291573	+	intron-Distal	6.71871	400.00000	K562	AGGF1
chr6	158252249	158252324	+	intron-Distal	4.82724	12.90682	HepG2	SUGP2
chr6	158250491	158250564	+	intron-Distal	3.89225	9.74134	K562	KHSRP
chr6	158291862	158291936	+	intron-Distal	3.65416	3.57593	K562	GTF2F1
chr6	158308385	158308448	+	intron-Distal	3.87051	3.47525	K562	MATR3
chr6	158324947	158325019	+	intron-Distal	3.94531	3.71397	K562	KHSRP
chr6	158261471	158261556	+	intron-Distal	6.22753	63.58954	K562	PTBP1
chr6	158290847	158290920	+	intron-Distal	5.34941	43.43589	K562	HNRNPL
chr6	158244749	158244813	+	intron-Distal	5.98439	12.81834	K562	XRN2
chr6	158291516	158291568	+	intron-Distal	3.69084	14.47155	K562	HNRNPL
chr6	158290962	158291068	+	intron-Distal	4.48103	19.14618	HepG2	AGGF1
chr6	158291846	158291879	+	intron-Distal	3.73700	6.90182	HepG2	HNRNPL
chr6	158244840	158244898	+	intron-Distal	4.81337	7.65368	K562	XRN2
chr6	158290848	158290931	+	intron-Distal	3.97378	15.91467	HepG2	HNRNPL
chr6	158291280	158291352	+	intron-Distal	6.81674	400.00000	K562	AGGF1
chr6	158345658	158345725	+	intron-Distal	3.79569	3.55315	K562	SAFB
chr6	158249193	158249295	+	intron-Distal	3.14304	7.81851	K562	KHSRP
chr6	158244538	158244660	+	intron-Distal,intron-Proximal	4.21387	19.62613	K562	EFTUD2
chr6	158270760	158270803	+	intron-Distal	3.72239	4.57394	K562	HNRNPM
chr6	158290957	158291059	+	intron-Distal	5.36886	6.41765	K562	GTF2F1
chr6	158291112	158291184	+	intron-Distal	5.31368	18.95499	K562	HNRNPL
chr6	158251514	158251559	+	intron-Distal	5.15792	8.60156	HepG2	HNRNPM
chr6	158252718	158252770	+	intron-Distal	4.62190	7.29205	K562	HNRNPM
chr6	158291223	158291280	+	intron-Distal	6.45674	400.00000	K562	AGGF1
chr6	158291936	158292006	+	intron-Distal	3.97963	7.50007	K562	GTF2F1
chr6	158252811	158252878	+	intron-Distal	3.88439	9.50395	HepG2	SUGP2
chr6	158244555	158244649	+	intron-Distal,intron-Proximal	3.21848	3.68667	HepG2	FAM120A
chr6	158251425	158251498	+	intron-Distal	5.06291	6.79824	HepG2	HNRNPM
chr6	158287836	158287943	+	intron-Distal	4.15763	8.74918	K562	TARDBP
chr6	158251559	158251613	+	intron-Distal	4.47738	7.67565	HepG2	HNRNPM
chr6	158307489	158307574	+	intron-Distal	3.80435	3.39667	K562	HNRNPL
chr6	158291151	158291180	+	intron-Distal	5.99714	400.00000	K562	AGGF1
chr6	158296330	158296375	+	intron-Distal	3.94058	3.02234	K562	KHSRP
chr6	158270547	158270606	+	intron-Distal	4.63544	4.53244	K562	HNRNPM
chr6	158291278	158291353	+	intron-Distal	4.66663	12.55225	HepG2	AGGF1
chr6	158291887	158292047	+	intron-Distal	3.31852	8.20100	HepG2	AGGF1
chr6	158291877	158291935	+	intron-Distal	5.27934	33.86739	K562	HNRNPL
chr6	158271106	158271191	+	intron-Distal	3.27294	4.13821	HepG2	EXOSC5
chr6	158291935	158291993	+	intron-Distal	4.47063	26.61575	K562	HNRNPL
chr6	158291681	158291710	+	intron-Distal	5.26264	10.28279	HepG2	HNRNPL
chr6	158250564	158250645	+	intron-Distal	4.51500	18.58767	K562	KHSRP
chr6	158290952	158291017	+	intron-Distal	5.20455	17.16549	HepG2	HNRNPL
chr6	158291631	158291665	+	intron-Distal	5.65105	67.02006	K562	AGGF1
chr6	158303043	158303100	+	intron-Distal	3.75211	4.79276	K562	ZNF622
chr6	158251454	158251504	+	intron-Distal	3.66120	7.76736	K562	HNRNPM
chr6	158291637	158291720	+	intron-Distal	5.29726	27.65111	K562	HNRNPL
chr6	158252324	158252380	+	intron-Distal	3.63523	7.27760	HepG2	SUGP2
chr6	158292070	158292106	+	intron-Distal	4.74749	15.21910	K562	HNRNPL
chr6	158291345	158291399	+	intron-Distal	5.20671	19.80109	HepG2	HNRNPL
chr6	158244549	158244664	+	intron-Distal,intron-Proximal	3.00792	5.83192	K562	GTF2F1
chr6	158251625	158251678	+	intron-Distal	3.86896	5.61842	HepG2	MATR3
chr6	158299127	158299262	+	intron-Distal	5.90700	14.24378	K562	HNRNPM
chr6	158261463	158261570	+	intron-Distal	4.66288	19.70659	HepG2	PTBP1
chr6	158252263	158252317	+	intron-Distal	3.55238	4.61500	HepG2	HNRNPM
chr6	158245773	158245859	+	intron-Distal	4.56687	17.25513	K562	KHSRP
chr6	158291098	158291151	+	intron-Distal	6.41048	400.00000	K562	AGGF1
chr6	158244559	158244643	+	intron-Distal,intron-Proximal	3.86660	3.29554	HepG2	GTF2F1
chr6	158291431	158291515	+	intron-Distal	7.19005	400.00000	K562	AGGF1
chr6	158328061	158328133	+	intron-Distal	3.86376	7.41820	K562	LSM11
chr6	158251825	158251875	+	intron-Distal	3.78870	6.48659	HepG2	SUGP2
chr6	158291393	158291431	+	intron-Distal	7.36754	160.00813	K562	AGGF1
chr6	158291387	158291483	+	intron-Distal	3.62853	5.53855	K562	YBX3
chr6	158291352	158291393	+	intron-Distal	7.71890	197.29104	K562	AGGF1
chr6	158252821	158252859	+	intron-Distal	3.39745	4.28420	HepG2	HNRNPM
chr6	158291931	158291989	+	intron-Distal	6.88347	400.00000	K562	AGGF1
chr6	158360872	158360953	+	intron-Distal	3.39590	4.81973	K562	RBFOX2
chr6	158251956	158251998	+	intron-Distal	4.25432	3.55787	K562	PTBP1
chr6	158345590	158345662	+	intron-Distal	3.68773	3.19638	K562	SAFB2
chr6	158244912	158244981	+	intron-Distal	3.06980	3.59592	K562	XRN2
chr6	158291017	158291075	+	intron-Distal	4.80920	22.34396	HepG2	HNRNPL
chr6	158255647	158255769	+	intron-Distal	3.28014	3.63710	K562	HNRNPK
chr6	158291893	158291931	+	intron-Distal	6.14391	400.00000	K562	AGGF1
chr6	158291273	158291345	+	intron-Distal	4.54221	19.92114	K562	HNRNPL
chr6	158301645	158301714	+	intron-Distal	3.24279	3.69184	HepG2	SUGP2
chr6	158251454	158251493	+	intron-Distal	3.06187	3.91933	K562	EXOSC5
chr6	158291712	158291792	+	intron-Distal	3.99547	14.79038	HepG2	HNRNPL
chr6	158301374	158301540	+	intron-Distal	5.05977	8.34140	K562	MATR3
chr6	158271449	158271542	+	intron-Distal	5.06476	7.71312	K562	EXOSC5
chr6	158303566	158303611	+	intron-Distal	4.30211	4.10264	K562	ZNF622
chr6	158252727	158252786	+	intron-Distal	4.51499	3.30687	K562	EXOSC5
chr6	158361410	158361465	+	intron-Distal	3.06916	3.00168	K562	XRCC6
chr6	158260183	158260251	+	intron-Distal	3.87793	3.06347	K562	NONO
chr6	158260181	158260290	+	intron-Distal	4.01659	12.94987	K562	KHSRP
chr6	158301542	158301670	+	intron-Distal	3.86888	3.89405	HepG2	PTBP1
chr6	158295653	158295725	+	intron-Distal	5.19749	7.67538	K562	HNRNPL
chr6	158338332	158338397	+	intron-Distal	3.62280	4.22415	K562	PTBP1
chr6	158318053	158318071	+	intron-Proximal	5.07707	12.60993	K562	AQR
chr6	158327266	158327319	+	intron-Proximal	4.09641	4.00100	K562	TIA1
chr6	158294209	158294261	+	intron-Proximal	5.12363	6.44303	K562	AQR
chr6	158288674	158288708	+	intron-Proximal	5.18827	7.28294	K562	AQR
chr6	158323092	158323131	+	intron-Proximal	4.02731	4.98250	K562	AQR
chr6	158296208	158296259	+	intron-Proximal	4.49211	6.39176	K562	AQR
chr6	158318030	158318053	+	intron-Proximal	5.96766	12.06330	K562	AQR
chr6	158288665	158288674	+	intron-Proximal	4.10331	5.97994	K562	AQR
chr6	158362025	158362049	+	intron-Proximal	4.46141	9.80019	K562	AQR
chr6	158353311	158353346	+	intron-Proximal	4.10331	4.00320	K562	AQR
chr6	158327269	158327329	+	intron-Proximal	4.97046	5.50038	K562	RBM22
chr6	158327113	158327151	+	intron-Proximal	4.63795	4.69961	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SNX9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNX9 is not available on ENCORE database.
81 RBPs can affect the levels of SNX9.

The Knockdown/knockout RNA-Seq assay for SNX9 is not available on ENCORE database.

81 RBPs can affect the gene expression of SNX9 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNX9	ENSG00000130340.10	1632.66590	2127.57960	-0.38200	3.09440	2.09650	HepG2	ABCF1
SNX9	ENSG00000130340.10	2655.41680	2131.46100	0.31700	1.93630	1.48230	HepG2	AKAP1
SNX9	ENSG00000130340.10	2124.39780	1805.91730	0.23420	2.90270	2.20160	HepG2	AUH
SNX9	ENSG00000130340.10	735.49820	1018.64390	-0.46990	3.41340	2.37370	HepG2	BCCIP
SNX9	ENSG00000130340.10	1758.19460	2581.73930	-0.55420	4.39540	3.15100	HepG2	CCAR1
SNX9	ENSG00000130340.10	1078.20280	1675.52950	-0.63600	6.95740	5.76910	HepG2	CIRBP
SNX9	ENSG00000130340.10	470.87770	629.08360	-0.41790	2.91560	1.81410	HepG2	CSTF2
SNX9	ENSG00000130340.10	2196.31920	1660.19750	0.40360	6.55360	5.64430	HepG2	CELF1
SNX9	ENSG00000130340.10	2101.42230	1785.03930	0.23530	3.45950	2.64820	HepG2	DAZAP1
SNX9	ENSG00000130340.10	1547.04120	1269.31630	0.28540	2.80620	1.63830	HepG2	DDX1
SNX9	ENSG00000130340.10	980.05970	1256.30410	-0.35820	2.90420	2.21070	HepG2	DDX21
SNX9	ENSG00000130340.10	2810.75240	1527.75110	0.87940	6.36530	4.91060	HepG2	DDX59
SNX9	ENSG00000130340.10	3533.95600	1754.01560	1.01050	15.36470	14.07020	HepG2	DDX6
SNX9	ENSG00000130340.10	1525.50490	1244.61850	0.29350	3.07640	2.33920	HepG2	DNAJC21
SNX9	ENSG00000130340.10	1158.89620	1484.85140	-0.35760	2.51710	1.63480	HepG2	EEF2
SNX9	ENSG00000130340.10	2247.75350	1686.04380	0.41470	3.36090	2.71180	HepG2	EIF2S1
SNX9	ENSG00000130340.10	924.42710	1205.38560	-0.38290	2.39640	1.55110	HepG2	EIF3D
SNX9	ENSG00000130340.10	887.44220	1186.32170	-0.41880	4.19300	2.89600	HepG2	EIF3G
SNX9	ENSG00000130340.10	1149.80240	1863.21190	-0.69640	7.05400	6.03360	HepG2	EIF4A3
SNX9	ENSG00000130340.10	1389.18160	1814.22190	-0.38510	2.10970	1.50540	HepG2	EIF4B
SNX9	ENSG00000130340.10	2078.67240	1687.02800	0.30110	2.33950	1.58750	HepG2	EIF4G2
SNX9	ENSG00000130340.10	725.87490	1073.24530	-0.56420	5.48840	4.22140	HepG2	GEMIN5
SNX9	ENSG00000130340.10	980.39310	1256.54320	-0.35800	2.97690	2.30940	HepG2	HNRNPA1
SNX9	ENSG00000130340.10	1716.51110	1444.18960	0.24910	2.57970	1.88600	HepG2	HNRNPF
SNX9	ENSG00000130340.10	1876.81680	1626.00970	0.20690	2.64890	1.98940	HepG2	HNRNPL
SNX9	ENSG00000130340.10	1131.53280	1482.11160	-0.38940	3.90700	2.79590	HepG2	HNRNPM
SNX9	ENSG00000130340.10	1833.75930	2726.22590	-0.57210	4.75680	3.65850	HepG2	LARP4
SNX9	ENSG00000130340.10	1013.02390	1880.75590	-0.89260	12.30570	10.95770	HepG2	MAGOH
SNX9	ENSG00000130340.10	1044.62840	1891.25040	-0.85640	10.36970	9.21030	HepG2	MATR3
SNX9	ENSG00000130340.10	1248.47090	1935.77400	-0.63270	6.55540	5.59890	HepG2	NCBP2
SNX9	ENSG00000130340.10	1618.93570	1290.47570	0.32700	2.37930	1.68360	HepG2	NSUN2
SNX9	ENSG00000130340.10	2562.59750	1788.72860	0.51860	2.71620	1.83680	HepG2	PABPC1
SNX9	ENSG00000130340.10	1571.33100	1927.06210	-0.29440	3.95390	3.25490	HepG2	PCBP1
SNX9	ENSG00000130340.10	1510.97200	1238.38860	0.28690	2.94640	2.18860	HepG2	PPIL4
SNX9	ENSG00000130340.10	1085.05030	1297.65380	-0.25810	2.50130	1.76190	HepG2	PRPF4
SNX9	ENSG00000130340.10	1026.49820	1510.82090	-0.55760	3.44450	2.09650	HepG2	PRPF6
SNX9	ENSG00000130340.10	571.17510	772.39650	-0.43540	3.02640	2.18470	HepG2	PRPF8
SNX9	ENSG00000130340.10	1677.53530	1960.83530	-0.22510	2.49800	1.97400	HepG2	PTBP1
SNX9	ENSG00000130340.10	2331.33730	1793.70210	0.37810	8.59470	7.67190	HepG2	PUM1
SNX9	ENSG00000130340.10	2670.43670	1792.37560	0.57510	10.33800	9.08630	HepG2	PUM2
SNX9	ENSG00000130340.10	2695.61400	1386.88180	0.95870	7.77260	6.62630	HepG2	RAVER1
SNX9	ENSG00000130340.10	3266.64960	2232.33040	0.54920	10.06100	8.56960	HepG2	RBM15
SNX9	ENSG00000130340.10	655.05570	1108.29950	-0.75870	7.87070	6.10680	HepG2	RCC2
SNX9	ENSG00000130340.10	1599.30600	2182.24010	-0.44840	8.11570	7.27590	HepG2	NELFE
SNX9	ENSG00000130340.10	1383.52710	2032.42630	-0.55490	11.86500	10.72410	HepG2	RECQL
SNX9	ENSG00000130340.10	803.48990	1172.88110	-0.54570	6.18330	5.30610	HepG2	RPS19
SNX9	ENSG00000130340.10	814.85000	1258.75710	-0.62740	6.45030	5.25830	HepG2	RPS2
SNX9	ENSG00000130340.10	1337.58300	1965.52030	-0.55530	4.05160	3.08230	HepG2	RPS3A
SNX9	ENSG00000130340.10	1211.53940	764.03600	0.66500	5.51000	4.43590	HepG2	RRP9
SNX9	ENSG00000130340.10	1605.97170	1236.46630	0.37710	6.14030	5.23830	HepG2	SAFB2
SNX9	ENSG00000130340.10	1740.27730	2041.52290	-0.23030	2.60680	2.02940	HepG2	SF3B4
SNX9	ENSG00000130340.10	1266.99140	1441.89990	-0.18660	1.93200	1.37850	HepG2	SMN1
SNX9	ENSG00000130340.10	1883.81980	1414.24010	0.41350	2.43680	1.54120	HepG2	SMNDC1
SNX9	ENSG00000130340.10	4058.06300	1957.33760	1.05180	57.81050	56.28510	HepG2	SRFBP1
SNX9	ENSG00000130340.10	1421.64150	2130.89150	-0.58390	13.71780	12.83710	HepG2	SRSF1
SNX9	ENSG00000130340.10	2052.94570	1550.04260	0.40530	2.49520	1.54950	HepG2	SRSF3
SNX9	ENSG00000130340.10	1846.32160	1418.89240	0.37980	5.65460	4.71700	HepG2	SRSF7
SNX9	ENSG00000130340.10	2299.38460	1733.57960	0.40740	7.84300	6.99880	HepG2	SRSF9
SNX9	ENSG00000130340.10	1372.56320	1699.49090	-0.30820	3.64850	3.07760	HepG2	SSB
SNX9	ENSG00000130340.10	1975.99270	1296.08160	0.60830	4.16700	2.67630	HepG2	SUB1
SNX9	ENSG00000130340.10	1355.66380	1897.34650	-0.48500	10.31110	9.23960	HepG2	SUCLG1
SNX9	ENSG00000130340.10	2005.41090	1450.46720	0.46730	5.57550	4.26400	HepG2	SUPT6H
SNX9	ENSG00000130340.10	1300.94330	996.99070	0.38380	2.05210	1.45670	HepG2	SUPV3L1
SNX9	ENSG00000130340.10	1306.51660	1915.28280	-0.55180	9.86080	8.90730	HepG2	TAF15
SNX9	ENSG00000130340.10	1428.31640	2551.05420	-0.83680	4.46470	3.13360	HepG2	TBRG4
SNX9	ENSG00000130340.10	940.58290	668.20460	0.49320	3.06350	2.01850	HepG2	TFIP11
SNX9	ENSG00000130340.10	1031.01520	1349.03810	-0.38790	4.00770	3.42900	HepG2	TIAL1
SNX9	ENSG00000130340.10	1328.65040	1716.66920	-0.36970	5.70760	4.89820	HepG2	UTP3
SNX9	ENSG00000130340.10	776.14190	981.43020	-0.33860	2.33160	1.66180	HepG2	XRN2
SNX9	ENSG00000130340.10	2337.52910	1955.55160	0.25730	4.28340	3.64210	HepG2	ZNF622
SNX9	ENSG00000130340.10	3061.40520	2270.04240	0.43140	5.23530	3.54680	K562	AARS
SNX9	ENSG00000130340.10	3250.03380	3733.98750	-0.20030	2.63000	2.07290	K562	AGGF1
SNX9	ENSG00000130340.10	2940.83750	3977.76790	-0.43570	5.42920	4.65450	K562	AQR
SNX9	ENSG00000130340.10	1618.49970	1980.45460	-0.29120	2.65210	1.63250	K562	DDX3X
SNX9	ENSG00000130340.10	2247.83200	1841.16990	0.28780	2.20140	1.38730	K562	EFTUD2
SNX9	ENSG00000130340.10	1693.70240	1988.58070	-0.23160	2.36350	1.62500	K562	EIF3G
SNX9	ENSG00000130340.10	1275.03330	2069.02410	-0.69840	10.33360	8.72800	K562	EIF4A3
SNX9	ENSG00000130340.10	2558.16150	2151.68740	0.24950	2.81260	2.20330	K562	FXR1
SNX9	ENSG00000130340.10	2743.52740	4368.77400	-0.67120	12.89170	11.23700	K562	GRSF1
SNX9	ENSG00000130340.10	2005.64760	2484.43780	-0.30890	2.89010	2.28270	K562	HNRNPC
SNX9	ENSG00000130340.10	2073.59610	2530.54200	-0.28730	2.54460	1.73790	K562	MAGOH
SNX9	ENSG00000130340.10	2019.77710	3380.40210	-0.74300	26.70700	24.58480	K562	MTPAP
SNX9	ENSG00000130340.10	2923.86510	2251.44790	0.37690	3.92760	2.75770	K562	PCBP2
SNX9	ENSG00000130340.10	3119.12840	3754.39890	-0.26740	3.26910	2.63300	K562	RBM15
SNX9	ENSG00000130340.10	1569.86090	2031.96860	-0.37220	3.99300	2.79920	K562	RCC2
SNX9	ENSG00000130340.10	3346.41650	2410.33770	0.47330	6.95160	5.84050	K562	SRSF1
SNX9	ENSG00000130340.10	4202.51810	5223.60250	-0.31380	3.73870	1.99760	K562	SUCLG1
SNX9	ENSG00000130340.10	2408.06730	1898.00780	0.34330	3.96380	3.00490	K562	U2AF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNX9 is not available on ENCORE database.

1 RBPs can affect the splicing of SNX9 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	SNX9	ENSG00000130340.10	chr6	+	158348142	158348246			158342562	158342693	158353226	158353304	-0.06100	0.00000	0.00012	excluded	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNX9

General Information

Functions

Localization

Domains (AlphaFold: SNX9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNX9 is not avaliable on ENCORE database.

54 proteins are bound to SNX9 RNA:

eCLIP assay for SNX9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNX9 is not available on ENCORE database.

81 RBPs can affect the gene expression of SNX9 :

The Knockdown/knockout RNA-Seq assay for SNX9 is not available on ENCORE database.

1 RBPs can affect the splicing of SNX9 :

The Knockdown/knockout RNA-Seq assay for SNX9 is not avaliable on ENCORE database.