SNF8

General Information

Gene Name       : SNF8
Gene ID             : ENSG00000159210.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SNF8)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNF8ENSG00000159210.961.1971.5066.34ENCSR000AEF
HepG2SNF8ENSG00000159210.9172.25144.34158.30ENCSR985KAT
K562SNF8ENSG00000159210.992.1388.5690.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNF8 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNF8 RNA is bound by 19 proteins.  







eCLIP assay for SNF8 is not avaliable on ENCORE database.





19 proteins are bound to SNF8 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174700781647007975-3'-UTR,CDS,intron-Distal,intron-Proximal3.617674.02339HepG2PABPN1
chr174700900447009079-3'-UTR,CDS,intron-Distal,intron-Proximal3.765614.91258K562YBX3
chr174700794047007959-3'-UTR,CDS,intron-Distal4.205183.82843HepG2PPIG
chr174700795947007977-3'-UTR,CDS,intron-Distal3.469024.51003HepG2PPIG
chr174700901147009058-3'-UTR,CDS,intron-Distal3.120223.72946HepG2PPIG
chr174701430747014413-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.4873238.25457HepG2PRPF8
chr174701357647013605-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.832013.95647K562PABPC4
chr174701357647013641-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.027315.63763K562AQR
chr174700906547009158-3'-UTR,CDS,intron-Distal,intron-Proximal4.041634.22551K562SF3B4
chr174701052147010586-3'-UTR,CDS,intron-Distal,intron-Proximal4.309486.81564HepG2PRPF8
chr174701352247013605-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.724833.05298K562GRWD1
chr174700896647009033-3'-UTR,CDS,intron-Distal,intron-Proximal3.512475.34140HepG2PRPF8
chr174700787547007945-3'-UTR,CDS,intron-Distal4.138084.51688K562YBX3
chr174701442747014500-3'-UTR,CDS,intron-Distal,intron-Proximal3.353344.57751HepG2U2AF2
chr174700905847009080-3'-UTR,CDS,intron-Distal,intron-Proximal4.384413.79199HepG2PPIG
chr174701438147014428-3'-UTR,CDS,intron-Distal,intron-Proximal3.635513.04123K562LIN28B
chr174701062747010717-3'-UTR,CDS,intron-Distal,intron-Proximal3.003493.19560HepG2LARP4
chr174701349447013559-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.031285.01842HepG2PRPF8
chr174700779847007885-3'-UTR,CDS,intron-Distal,intron-Proximal4.347749.45563HepG2LARP4
chr174701353147013576-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.506745.42839K562PABPC4
chr174702205247022105-5'-UTR,CDS,intron-Distal,intron-Proximal4.700207.41350HepG2GRWD1
chr174702204447022104-5'-UTR,CDS,intron-Distal,intron-Proximal4.5216755.78008HepG2DDX3X
chr174702204047022118-5'-UTR,CDS,intron-Distal,intron-Proximal4.811266.05328HepG2TRA2A
chr174702204247022173-5'-UTR,CDS,intron-Distal,intron-Proximal3.059545.75907K562PABPC4
chr174702204247022101-5'-UTR,CDS,intron-Distal,intron-Proximal3.120553.56105HepG2GRSF1
chr174702210247022182-5'-UTR,intron-Distal,intron-Proximal4.6862112.21906K562DDX3X
chr174701828047018322-5'-UTR,CDS,intron-Distal,intron-Proximal3.099385.57447HepG2GRWD1
chr174702210447022174-5'-UTR,intron-Distal,intron-Proximal5.7244749.81690HepG2DDX3X
chr174701824247018311-5'-UTR,CDS,intron-Distal,intron-Proximal3.446324.54206HepG2PRPF8
chr174702204247022102-5'-UTR,CDS,intron-Distal,intron-Proximal3.3900914.69203K562DDX3X
chr174702210347022172-5'-UTR,intron-Distal,intron-Proximal5.8023314.47077HepG2NCBP2
chr174702203447022098-5'-UTR,CDS,intron-Distal,intron-Proximal3.953546.98960K562RBM15
chr174702204647022177-5'-UTR,CDS,intron-Distal,intron-Proximal3.071725.27768K562DDX6
chr174702210147022167-5'-UTR,intron-Distal,intron-Proximal4.600996.10062HepG2GRSF1
chr174702208147022103-5'-UTR,CDS,intron-Distal,intron-Proximal4.0279410.52562HepG2NCBP2
chr174701832247018397-CDS,intron-Distal4.142379.51318HepG2GRWD1
chr174701839747018425-CDS,intron-Distal,intron-Proximal4.083533.56019HepG2GRWD1
chr174702133047021414-CDS,intron-Distal,intron-Proximal4.889204.26208K562SF3B4
chr174702127347021334-CDS,intron-Distal,intron-Proximal4.127763.15171K562SRSF1
chr174702128547021338-CDS,intron-Distal,intron-Proximal4.675934.69071HepG2GRWD1
chr174702204047022081-CDS,intron-Distal,intron-Proximal3.6481011.01291HepG2NCBP2
chr174701086647010928-intron-Distal3.097203.02835K562XRCC6
chr174700907947009161-intron-Distal,intron-Proximal4.110003.56713HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNF8 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNF8 is not available on ENCORE database.

  • 69 RBPs can affect the levels of SNF8.  








The Knockdown/knockout RNA-Seq assay for SNF8 is not available on ENCORE database.





69 RBPs can affect the gene expression of SNF8 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNF8ENSG00000159210.51378.171901054.821000.385702.834701.88220HepG2ABCF1
SNF8ENSG00000159210.51416.312501086.231400.382702.329401.83690HepG2AKAP1
SNF8ENSG00000159210.5898.657401070.86830-0.252902.263501.56190HepG2AKAP8L
SNF8ENSG00000159210.51354.46750898.761400.591605.667204.56560HepG2ASCC1
SNF8ENSG00000159210.51163.801001705.94530-0.5517010.768809.56220HepG2AUH
SNF8ENSG00000159210.5710.38660970.01330-0.449403.004902.06630HepG2BCLAF1
SNF8ENSG00000159210.5739.133601065.61290-0.527808.923707.86040HepG2CKAP4
SNF8ENSG00000159210.5855.55750493.737500.793005.169804.11900HepG2CNOT7
SNF8ENSG00000159210.5897.725301325.64500-0.562305.533504.59220HepG2CPSF6
SNF8ENSG00000159210.51788.878601541.106500.215002.326201.72830HepG2CELF1
SNF8ENSG00000159210.51101.779601656.81500-0.588609.251308.02260HepG2DAZAP1
SNF8ENSG00000159210.5876.069301505.35710-0.781004.957303.66310HepG2DDX59
SNF8ENSG00000159210.51296.622601019.789400.346404.091203.29920HepG2DKC1
SNF8ENSG00000159210.5676.00010809.08890-0.259302.280701.67640HepG2DNAJC2
SNF8ENSG00000159210.51357.99880924.558700.554503.623202.84150HepG2EIF4B
SNF8ENSG00000159210.51493.595801958.72040-0.391106.487505.63080HepG2ETF1
SNF8ENSG00000159210.51278.072301041.528900.295202.300801.53980HepG2EWSR1
SNF8ENSG00000159210.5570.72640717.54530-0.330302.145001.44600HepG2FUBP3
SNF8ENSG00000159210.51510.06800958.105900.656306.989605.92360HepG2FXR1
SNF8ENSG00000159210.51245.80670888.768700.487103.746402.97580HepG2G3BP1
SNF8ENSG00000159210.51136.628101502.80700-0.402902.740802.10240HepG2GPKOW
SNF8ENSG00000159210.5816.824201017.60880-0.317103.399202.32330HepG2HDGF
SNF8ENSG00000159210.51031.777901520.88140-0.5598010.136408.87310HepG2HNRNPF
SNF8ENSG00000159210.5963.058501434.14870-0.574504.370103.59490HepG2HNRNPLL
SNF8ENSG00000159210.5670.19040910.68190-0.442405.369804.54730HepG2HNRNPU
SNF8ENSG00000159210.51299.88050903.408700.524804.737903.87560HepG2IGF2BP2
SNF8ENSG00000159210.51673.91900963.800200.796308.851107.77520HepG2MATR3
SNF8ENSG00000159210.5922.037901462.45940-0.665504.768703.47590HepG2MTPAP
SNF8ENSG00000159210.5891.22130628.285800.504302.828601.38000HepG2NKRF
SNF8ENSG00000159210.5662.17690812.26010-0.294702.327301.64510HepG2PPIL4
SNF8ENSG00000159210.5641.90460877.53530-0.451105.148404.12790HepG2PRPF4
SNF8ENSG00000159210.51178.73420968.522600.283302.864702.30970HepG2PTBP1
SNF8ENSG00000159210.5750.806401048.94430-0.482405.377404.54880HepG2QKI
SNF8ENSG00000159210.51928.841101637.113800.236502.217401.74020HepG2RBM22
SNF8ENSG00000159210.5785.54130951.98050-0.277201.869101.30600HepG2RBM25
SNF8ENSG00000159210.51476.823901077.876700.454206.566905.79320HepG2NELFE
SNF8ENSG00000159210.5749.17660575.205600.381102.664002.05980HepG2RPS19
SNF8ENSG00000159210.5693.13140495.656400.483702.566901.79610HepG2RPS3A
SNF8ENSG00000159210.5601.73700837.53320-0.477003.020802.20400HepG2RRP9
SNF8ENSG00000159210.51054.733601419.57300-0.428602.851202.13490HepG2SF3B1
SNF8ENSG00000159210.51230.421801008.365800.287002.794902.20050HepG2SF3B4
SNF8ENSG00000159210.51059.285601503.99020-0.505708.351307.23200HepG2SLBP
SNF8ENSG00000159210.51179.83670945.810200.318904.059903.30550HepG2SMN1
SNF8ENSG00000159210.51408.961401849.03510-0.392106.685306.00040HepG2SRFBP1
SNF8ENSG00000159210.51681.424901052.512000.6757015.3401014.41880HepG2SRSF1
SNF8ENSG00000159210.51144.584101494.19610-0.384505.160204.25690HepG2SRSF7
SNF8ENSG00000159210.51987.570101605.357200.308004.369403.75540HepG2SSB
SNF8ENSG00000159210.5880.017301397.62540-0.667407.916806.77280HepG2TARDBP
SNF8ENSG00000159210.5497.72010732.35980-0.557203.687102.55690HepG2TFIP11
SNF8ENSG00000159210.5687.53170869.28220-0.338402.642601.82360HepG2TIA1
SNF8ENSG00000159210.5533.61540884.99650-0.7299010.100609.24910HepG2TIAL1
SNF8ENSG00000159210.5482.04720645.45500-0.421102.617601.88030HepG2UCHL5
SNF8ENSG00000159210.51048.21030897.722900.223501.917001.31790HepG2UPF1
SNF8ENSG00000159210.51147.32890866.716000.404505.201204.42340HepG2UTP3
SNF8ENSG00000159210.5729.59110866.02640-0.247302.156301.55250HepG2ZC3H8
SNF8ENSG00000159210.51291.620101016.896400.344902.672901.71140K562AKAP8
SNF8ENSG00000159210.5731.47970894.66710-0.290502.338401.45820K562BCLAF1
SNF8ENSG00000159210.51564.701401171.033500.418006.169305.25050K562DDX47
SNF8ENSG00000159210.51260.474601036.115000.282702.861501.96920K562DKC1
SNF8ENSG00000159210.5585.43050845.12120-0.529704.107002.97780K562EFTUD2
SNF8ENSG00000159210.5657.73760905.02470-0.460402.642801.63330K562EIF3D
SNF8ENSG00000159210.5855.16070605.311900.498404.525603.51870K562EIF3G
SNF8ENSG00000159210.51055.58760703.046800.586308.284407.30750K562FXR1
SNF8ENSG00000159210.5310.45270556.56440-0.842206.179105.02980K562G3BP2
SNF8ENSG00000159210.5517.43310711.55300-0.459603.574102.26440K562HNRNPF
SNF8ENSG00000159210.51172.51260760.581900.624305.584204.20180K562HNRNPM
SNF8ENSG00000159210.5860.640401218.70220-0.501906.703305.30640K562HNRNPU
SNF8ENSG00000159210.51010.21620795.050700.345402.775101.85040K562MATR3
SNF8ENSG00000159210.51475.210001837.11710-0.316502.492801.42340K562MSI2
SNF8ENSG00000159210.51100.51400774.088600.507503.953303.17290K562PTBP1
SNF8ENSG00000159210.51640.579701959.81370-0.256502.762601.80390K562PUM2
SNF8ENSG00000159210.51374.92860954.889400.525905.362504.63800K562PUS1
SNF8ENSG00000159210.5903.303301063.97350-0.236202.214601.36900K562SRPK2
SNF8ENSG00000159210.5546.47110796.45950-0.543503.695202.50520K562SUPV3L1
SNF8ENSG00000159210.5943.54770722.204600.385602.331101.57760K562SYNCRIP
SNF8ENSG00000159210.5408.19360557.21280-0.449003.416702.52630K562U2AF2
SNF8ENSG00000159210.5556.04610842.85320-0.600104.458003.13670K562UCHL5
SNF8ENSG00000159210.51345.323601780.32720-0.404204.050302.97310K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNF8 is not available on ENCORE database.





14 RBPs can affect the splicing of SNF8 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNF8ENSG00000159210.5chr17-470105664701070847007735470079744701353147013604-0.069000.001800.03369excludedK562SF3B4
SESNF8ENSG00000159210.5chr17-4701421647014295470135724701360447014381470144860.087000.000000.00000includedK562AQR
SESNF8ENSG00000159210.5chr17-470105664701070847009004470090794701353147013648-0.063000.000000.00006excludedK562AQR
SESNF8ENSG00000159210.5chr17-470090044700907947007749470079744701056647010953-0.071000.000000.00007excludedHepG2SRSF7
SESNF8ENSG00000159210.5chr17-470090044700907947007749470079744701353147013604-0.113000.001010.05142excludedK562EFTUD2
SESNF8ENSG00000159210.5chr17-470090044700907947007749470079744701056647010953-0.121000.000000.00001excludedHepG2SF3A3
SESNF8ENSG00000159210.5chr17-4701421647014295470135314701360447014381470144860.058000.001040.02054includedK562U2AF2
SESNF8ENSG00000159210.5chr17-470105664701070847007735470079744701353147013604-0.058000.000440.02013excludedK562HNRNPU
SESNF8ENSG00000159210.5chr17-470090044700907947007749470079744701056647010953-0.067000.000130.00878excludedHepG2HNRNPU
SESNF8ENSG00000159210.5chr17-470105664701070847009004470090794701353147013604-0.089000.000190.00475excludedK562HNRNPC
A3SSSNF8ENSG00000159210.5chr17-4701056647010790470105664701070847013531470136040.177000.000000.00000longerK562AQR
MXESNF8ENSG00000159210.5chr17-4701438147014486470182854701842447013531470136044702128647021337-0.084000.000000.000062includedHepG2FTO
MXESNF8ENSG00000159210.5chr17-4700900447009079470105664701070847006677470079744701353147013604-0.114000.003720.083922includedK562XRN2
MXESNF8ENSG00000159210.5chr17-47010566470107084701353147013648470090044700907947014381470144860.076000.000010.000141includedK562AQR
MXESNF8ENSG00000159210.5chr17-47010566470107084701353147013685470090044700907947014381470144860.072000.000020.000231includedK562AQR
MXESNF8ENSG00000159210.5chr17-47009014470090794701056647010778470066774700797447013531470136040.431000.013130.078861includedK562AQR
MXESNF8ENSG00000159210.5chr17-47009014470090794701056647010753470066774700797447013531470136040.472000.007600.050661includedK562AQR
MXESNF8ENSG00000159210.5chr17-47009004470090794701056647010753470077324700797447013531470136040.055000.000000.000001includedK562AQR
MXESNF8ENSG00000159210.5chr17-47009004470090764701056647010753470077354700797447013531470136040.080000.000000.000001includedK562AQR
MXESNF8ENSG00000159210.5chr17-47009004470090764701056647010790470077354700797447013531470136040.052000.000020.000321includedK562AQR
MXESNF8ENSG00000159210.5chr17-47009004470090764701056647010778470077354700797447013531470136040.066000.000000.000011includedK562AQR
MXESNF8ENSG00000159210.5chr17-47009004470090764701056647010727470077354700797447013531470136040.054000.000010.000181includedK562AQR
MXESNF8ENSG00000159210.5chr17-4701421647014295470144704701450847013572470136044701828547018424-0.344000.002240.018362includedK562AQR
MXESNF8ENSG00000159210.5chr17-4701421647014295470143814701450847013572470136044701828547018424-0.156000.000000.000002includedK562AQR
MXESNF8ENSG00000159210.5chr17-4701421647014295470143814701448647013531470136044701828547018424-0.079000.000000.000002includedK562AQR
MXESNF8ENSG00000159210.5chr17-4701438147014486470182854701842447014216470142954702128647021337-0.058000.000000.000052includedK562AQR
MXESNF8ENSG00000159210.5chr17-4700900447009079470105664701070847007865470079744701353147013604-0.116000.000410.004172includedK562AQR
MXESNF8ENSG00000159210.5chr17-4700900447009076470105664701070847007735470079744701353147013604-0.094000.005070.036352includedK562AQR
MXESNF8ENSG00000159210.5chr17-4700883547009079470105664701070847006677470079744701353147013604-0.085000.000000.000002includedK562AQR
MXESNF8ENSG00000159210.5chr17-4700900447009076470105664701070847007735470079744701353147013604-0.097000.007820.077592includedK562U2AF2
MXESNF8ENSG00000159210.5chr17-47009004470090794701056647010708470077424700797447013492470136040.137000.000000.000011includedHepG2SF3A3
MXESNF8ENSG00000159210.5chr17-47010566470107084701828547018424470090044700907947021286470213370.152000.000330.013921includedK562EFTUD2
MXESNF8ENSG00000159210.5chr17-47010566470107084701828547018424470090044700907947021286470213370.105000.018710.088381includedHepG2U2AF2
MXESNF8ENSG00000159210.5chr17-47010566470107084701353147013604470090044700907947014381470144860.094000.000200.027271includedK562ZNF800
MXESNF8ENSG00000159210.5chr17-47010566470107084701349247013604470090044700907947014381470144860.103000.000180.025881includedK562ZNF800
MXESNF8ENSG00000159210.5chr17-4700900447009079470105664701070847006677470079744701353147013604-0.169000.000030.001122includedK562SF3B4
MXESNF8ENSG00000159210.5chr17-4700900447009076470105664701070847007735470079744701353147013604-0.183000.000000.000022includedK562SF3B4
MXESNF8ENSG00000159210.5chr17-47010566470107084701828547018424470090044700907947021286470213370.106000.006290.088981includedK562PRPF8
MXESNF8ENSG00000159210.5chr17-4700900447009079470135314701360447006677470079744701438147014486-0.113000.002070.039942includedK562PRPF8
MXESNF8ENSG00000159210.5chr17-4700900447009079470105664701070847006677470079744701353147013604-0.120000.000970.022512includedK562PRPF8
MXESNF8ENSG00000159210.5chr17-47014381470144864701828547018424470135314701360447021286470213370.077000.000060.011811includedK562FMR1
MXESNF8ENSG00000159210.5chr17-4700900447009079470105664701070847006677470079744701353147013604-0.121000.001710.083192includedK562SERBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNF8 is not avaliable on ENCORE database.