SMOC1

General Information

Gene Name       : SMOC1
Gene ID             : ENSG00000198732.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMOC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMOC1ENSG00000198732.100.000.000.00ENCSR000AEF
HepG2SMOC1ENSG00000198732.1033.3725.2429.30ENCSR985KAT
K562SMOC1ENSG00000198732.100.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMOC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMOC1 RNA is bound by 27 proteins.  







eCLIP assay for SMOC1 is not avaliable on ENCORE database.





27 proteins are bound to SMOC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr147049826470498341+3'-UTR4.357814.20997HepG2UPF1
chr147049859470498648+3'-UTR3.802723.19668HepG2UPF1
chr147049725470497313+3'-UTR3.264346.16504HepG2TIA1
chr147049726070497315+3'-UTR4.146978.51847HepG2FAM120A
chr147049740370497508+3'-UTR3.537584.97764HepG2DDX55
chr147049733870497431+3'-UTR4.232566.46185HepG2FUBP3
chr147049727170497321+3'-UTR4.771573.66896HepG2FUBP3
chr147049723670497315+3'-UTR4.793385.36996HepG2PCBP2
chr147049734470497425+3'-UTR3.030003.88925HepG2UPF1
chr147049792970498067+3'-UTR5.200248.87118HepG2UPF1
chr147049735870497418+3'-UTR5.587826.75371HepG2DDX6
chr147034613770346196+5'-UTR,intron-Distal4.9554934.05117HepG2DDX3X
chr147034634170346421+5'-UTR,CDS,intron-Distal3.5814316.09073HepG2DDX3X
chr147034621270346311+5'-UTR,intron-Distal3.3804723.76563HepG2DDX3X
chr147034632570346423+5'-UTR,CDS,intron-Distal3.043596.95476HepG2RPS3
chr147047820170478275+CDS,intron-Proximal3.329635.16993HepG2SND1
chr147048993970489988+CDS4.417296.63657HepG2SND1
chr147047761970477660+CDS3.660374.50521HepG2SND1
chr147047746970477534+CDS,intron-Proximal4.788098.98365HepG2PPIG
chr147047754770477619+CDS5.135258.82060HepG2SND1
chr147041895570419009+CDS3.711257.07209HepG2SND1
chr147044243170442504+CDS,intron-Proximal5.8230713.50950HepG2SND1
chr147044252770442582+CDS,intron-Proximal5.5097410.43516HepG2PRPF8
chr147049000370490046+CDS3.556486.16769HepG2SND1
chr147048991970489939+CDS,intron-Proximal3.851017.21038HepG2SND1
chr147048017970480209+CDS,intron-Proximal3.252635.43325HepG2SND1
chr147034642370346488+CDS,intron-Distal3.434198.46940HepG2RPS3
chr147042019770420260+CDS,intron-Proximal3.662146.98305HepG2PPIG
chr147042023170420250+CDS,intron-Proximal4.452184.23209HepG2SND1
chr147049012070490161+CDS4.148346.35450HepG2SND1
chr147047755070477610+CDS3.103293.00343HepG2GRWD1
chr147035140870351463+intron-Distal3.915523.27829HepG2MATR3
chr147044965170449709+intron-Distal5.107999.76145HepG2XPO5
chr147035324270353291+intron-Distal3.299463.91859HepG2SUGP2
chr147049471370494800+intron-Distal4.289967.41476HepG2RBFOX2
chr147044778570447868+intron-Distal3.279334.21158HepG2CSTF2T
chr147037557670375622+intron-Distal4.102243.62238HepG2MATR3
chr147038202270382089+intron-Distal3.503774.35402HepG2SUGP2
chr147038618070386250+intron-Distal5.9010415.78113HepG2QKI
chr147042179170421905+intron-Distal3.121274.89227HepG2KHSRP
chr147035293470353025+intron-Distal4.589485.01910HepG2MATR3
chr147045335770453454+intron-Distal4.088527.07318HepG2CSTF2
chr147036359270363678+intron-Distal3.620244.81844HepG2SUGP2
chr147035282770352907+intron-Distal4.768254.31720HepG2MATR3
chr147046189470461952+intron-Distal3.888534.77518HepG2U2AF2
chr147045900270459048+intron-Distal,intron-Proximal3.520053.16095HepG2U2AF2
chr147046910270469165+intron-Distal5.789279.05409HepG2XPO5
chr147045644770456505+intron-Distal3.386093.66782HepG2HNRNPM
chr147038311970383158+intron-Distal4.207254.53347HepG2SUGP2
chr147037089970370974+intron-Distal5.002436.99879HepG2CSTF2
chr147038323870383354+intron-Distal3.549764.23155HepG2MATR3
chr147038351170383605+intron-Distal3.047746.22873HepG2SUGP2
chr147044097870441112+intron-Distal3.060643.11118HepG2PRPF4
chr147047669070476790+intron-Distal4.259998.13166HepG2XPO5
chr147045895470459049+intron-Distal,intron-Proximal4.647353.41738HepG2PTBP1
chr147041388070413937+intron-Distal5.219108.13723HepG2PTBP1
chr147045234670452418+intron-Distal3.642047.66103HepG2HLTF
chr147036546470365517+intron-Distal3.942833.30440HepG2QKI
chr147042027470420332+intron-Proximal5.2729312.12214HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMOC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMOC1 is not available on ENCORE database.

  • 101 RBPs can affect the levels of SMOC1.  








The Knockdown/knockout RNA-Seq assay for SMOC1 is not available on ENCORE database.





101 RBPs can affect the gene expression of SMOC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMOC1ENSG00000198732.6955.371601281.39180-0.423603.026302.03990HepG2ABCF1
SMOC1ENSG00000198732.6572.232101023.55950-0.8389011.3772010.32140HepG2ACO1
SMOC1ENSG00000198732.61226.469102458.54140-1.0033013.9473012.84940HepG2AKAP1
SMOC1ENSG00000198732.6566.196901028.21460-0.8608015.0892013.50400HepG2AKAP8L
SMOC1ENSG00000198732.61644.309301287.550600.352804.857403.98870HepG2AUH
SMOC1ENSG00000198732.61108.80040654.965000.759407.308505.92880HepG2BCLAF1
SMOC1ENSG00000198732.61055.07240628.014400.748404.864604.09950HepG2BOP1
SMOC1ENSG00000198732.61348.22100959.957700.489905.140203.48930HepG2BUD13
SMOC1ENSG00000198732.6782.821801023.15200-0.386304.545903.73400HepG2CKAP4
SMOC1ENSG00000198732.6260.86350840.53140-1.6880019.0116017.06700HepG2CNOT7
SMOC1ENSG00000198732.6933.39910576.511500.695004.141703.31620HepG2CPSF6
SMOC1ENSG00000198732.61649.138601055.141200.644205.653204.11190HepG2CPSF7
SMOC1ENSG00000198732.61182.59100712.096400.7317012.9570010.86240HepG2YBX3
SMOC1ENSG00000198732.6653.03580956.21360-0.550203.448001.87050HepG2CSTF2T
SMOC1ENSG00000198732.61733.936701298.551800.417006.496205.59000HepG2CELF1
SMOC1ENSG00000198732.61905.158101396.061700.4484010.206308.92190HepG2DAZAP1
SMOC1ENSG00000198732.6716.167501029.44920-0.523505.022104.13640HepG2DDX21
SMOC1ENSG00000198732.61410.821002355.03060-0.739209.268408.18110HepG2DDX3X
SMOC1ENSG00000198732.61503.939801087.790700.467204.584302.94150HepG2DDX47
SMOC1ENSG00000198732.61299.85860741.127800.810508.045006.80700HepG2DDX55
SMOC1ENSG00000198732.61708.30190654.684401.3836013.4762011.43100HepG2DDX59
SMOC1ENSG00000198732.61172.49070674.366000.7979011.336909.52920HepG2DHX30
SMOC1ENSG00000198732.6819.92580979.22120-0.256102.081801.48180HepG2DKC1
SMOC1ENSG00000198732.6801.111801061.31720-0.405802.759701.84110HepG2EEF2
SMOC1ENSG00000198732.6569.08610861.59300-0.598404.967403.78180HepG2EIF3D
SMOC1ENSG00000198732.6974.456402092.62080-1.1026013.1492011.71660HepG2EIF4B
SMOC1ENSG00000198732.61624.843201377.473100.238202.734301.90170HepG2EIF4G1
SMOC1ENSG00000198732.62548.873701319.500100.9498011.7390010.13430HepG2EIF4G2
SMOC1ENSG00000198732.6962.244801293.87430-0.427202.801502.02590HepG2FIP1L1
SMOC1ENSG00000198732.61956.844101508.463100.375303.628902.73570HepG2FUBP3
SMOC1ENSG00000198732.6945.406302168.60660-1.1978022.5462020.78230HepG2FXR1
SMOC1ENSG00000198732.6894.086502011.58170-1.1698019.5032017.81130HepG2G3BP1
SMOC1ENSG00000198732.6542.39500767.14910-0.500203.048702.10570HepG2GEMIN5
SMOC1ENSG00000198732.61327.55800977.094100.442106.644605.21400HepG2HDGF
SMOC1ENSG00000198732.6766.458801138.15700-0.570402.868701.46790HepG2HLTF
SMOC1ENSG00000198732.6487.88940705.86630-0.532804.244103.46730HepG2HNRNPA1
SMOC1ENSG00000198732.61542.243601283.117300.265303.125802.14040HepG2HNRNPA2B1
SMOC1ENSG00000198732.61144.62830785.173900.543705.430904.48670HepG2HNRNPC
SMOC1ENSG00000198732.61144.57360747.095400.615307.609806.49890HepG2HNRNPF
SMOC1ENSG00000198732.61358.931302037.18650-0.584106.952405.88170HepG2HNRNPK
SMOC1ENSG00000198732.61463.414001271.644600.202502.413401.77940HepG2HNRNPL
SMOC1ENSG00000198732.6517.98250892.65160-0.7852010.341708.71670HepG2HNRNPM
SMOC1ENSG00000198732.6966.50550779.980700.309202.844202.22970HepG2HNRNPU
SMOC1ENSG00000198732.61073.71440735.665000.545405.828604.81720HepG2IGF2BP1
SMOC1ENSG00000198732.61371.756702044.68650-0.575905.998805.04200HepG2IGF2BP2
SMOC1ENSG00000198732.6628.629101919.02050-1.6101010.782508.94990HepG2IGF2BP3
SMOC1ENSG00000198732.61035.71260796.719600.378405.370504.37560HepG2ILF2
SMOC1ENSG00000198732.6637.87100922.73720-0.532704.626703.04410HepG2LIN28B
SMOC1ENSG00000198732.61005.197702169.36480-1.1098018.8800017.24970HepG2MAGOH
SMOC1ENSG00000198732.6702.969902181.46960-1.6338033.8982031.87140HepG2MATR3
SMOC1ENSG00000198732.6638.86120901.76310-0.497202.416701.43140HepG2METAP2
SMOC1ENSG00000198732.6982.34120636.201900.626603.066002.04260HepG2MTPAP
SMOC1ENSG00000198732.61175.55690879.255500.418903.682902.28190HepG2NAA15
SMOC1ENSG00000198732.61078.729302232.82560-1.0495016.6680015.19890HepG2NCBP2
SMOC1ENSG00000198732.61673.560901384.342700.273602.836602.06380HepG2NOL12
SMOC1ENSG00000198732.61486.22490552.995601.4262016.1856014.54540HepG2NSUN2
SMOC1ENSG00000198732.6925.757901310.98150-0.501905.177103.01820HepG2NUP35
SMOC1ENSG00000198732.61363.658501988.33940-0.544105.204104.22600HepG2PABPC4
SMOC1ENSG00000198732.6608.57880772.01220-0.343203.019402.13850HepG2PARN
SMOC1ENSG00000198732.61574.780701979.09060-0.329704.740303.98140HepG2PCBP1
SMOC1ENSG00000198732.6803.069201122.76780-0.483502.633301.62060HepG2PCBP2
SMOC1ENSG00000198732.61015.17610695.675500.545106.294505.21540HepG2PPIL4
SMOC1ENSG00000198732.61290.95760901.876800.517307.941206.71650HepG2PRPF4
SMOC1ENSG00000198732.6758.538401180.21030-0.637704.090702.62260HepG2PRPF6
SMOC1ENSG00000198732.6325.32440571.69130-0.813406.715405.51830HepG2PRPF8
SMOC1ENSG00000198732.6790.872802013.81730-1.3484055.4196053.65920HepG2PTBP1
SMOC1ENSG00000198732.61057.282801321.53170-0.321802.364301.80710HepG2PUF60
SMOC1ENSG00000198732.6896.462401401.86410-0.645007.491406.41020HepG2PUM2
SMOC1ENSG00000198732.6815.142401042.53470-0.355003.545002.86650HepG2PUS1
SMOC1ENSG00000198732.61496.605701083.189400.466302.160901.53210HepG2RAVER1
SMOC1ENSG00000198732.61898.967801441.881400.397204.317803.27560HepG2RBM15
SMOC1ENSG00000198732.6407.291601235.57500-1.6010048.9365047.27720HepG2RBM22
SMOC1ENSG00000198732.6832.152001059.63570-0.348602.193101.32000HepG2RBM27
SMOC1ENSG00000198732.6526.28130860.47040-0.709305.349903.86670HepG2RCC2
SMOC1ENSG00000198732.61122.669702241.16990-0.9973033.8754032.43850HepG2NELFE
SMOC1ENSG00000198732.61332.200902087.37320-0.6479015.6568014.38590HepG2RECQL
SMOC1ENSG00000198732.6647.62990804.96560-0.313802.231601.60890HepG2RPLP0
SMOC1ENSG00000198732.6271.22140838.33220-1.6281033.9731032.23000HepG2RPS19
SMOC1ENSG00000198732.6500.27720977.27540-0.9660012.6088010.99650HepG2RPS2
SMOC1ENSG00000198732.6737.47800997.57480-0.435803.234802.06680HepG2RPS5
SMOC1ENSG00000198732.6796.41150565.518200.493803.071002.24900HepG2RRP9
SMOC1ENSG00000198732.61235.50440694.590800.8308013.2408011.98910HepG2SAFB2
SMOC1ENSG00000198732.6960.180801596.83720-0.733806.116305.09120HepG2SF3A3
SMOC1ENSG00000198732.61417.94310617.150301.2000016.1311014.57700HepG2SF3B1
SMOC1ENSG00000198732.61115.687402096.61030-0.9101028.7037027.14820HepG2SF3B4
SMOC1ENSG00000198732.61848.735501267.276300.5447013.8718012.50880HepG2SLBP
SMOC1ENSG00000198732.6481.91260809.98230-0.7491013.5735012.31540HepG2SMN1
SMOC1ENSG00000198732.6848.733402188.42090-1.3665062.5640060.98490HepG2SRSF1
SMOC1ENSG00000198732.61565.836501304.897900.262902.530901.92770HepG2SRSF5
SMOC1ENSG00000198732.61129.70790734.033700.621909.884908.70960HepG2SRSF7
SMOC1ENSG00000198732.61492.444801780.40870-0.254503.142302.56170HepG2SRSF9
SMOC1ENSG00000198732.61000.638001319.64500-0.399202.682301.41860HepG2SSRP1
SMOC1ENSG00000198732.6790.240401483.96180-0.9091025.8955024.31350HepG2SUCLG1
SMOC1ENSG00000198732.61392.96910873.595800.673009.277907.63950HepG2SUPT6H
SMOC1ENSG00000198732.6851.85640608.080000.486202.146901.49630HepG2TARDBP
SMOC1ENSG00000198732.6525.37320757.79170-0.528503.139002.61180HepG2TIAL1
SMOC1ENSG00000198732.61375.54730764.678800.8470021.7583020.36400HepG2TRIM56
SMOC1ENSG00000198732.6848.212001106.76550-0.383902.766802.13790HepG2U2AF1
SMOC1ENSG00000198732.6565.567001191.52120-1.0750011.086709.11820HepG2XRCC6
SMOC1ENSG00000198732.6963.89330726.256800.408302.589101.88710HepG2XRN2
SMOC1ENSG00000198732.61090.261501557.49520-0.5146011.3928010.46940HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMOC1 is not available on ENCORE database.





4 RBPs can affect the splicing of SMOC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMOC1ENSG00000198732.6chr14+7046271570462790704611167046119770477470704776630.106000.000060.02542includedHepG2ILF3
SESMOC1ENSG00000198732.6chr14+7046271570462790704611167046119770477470704776630.097000.000030.00280includedHepG2MATR3
SESMOC1ENSG00000198732.6chr14+7046741270467460704611167046119770477470704776630.055000.000270.00878includedHepG2SRSF1
SESMOC1ENSG00000198732.6chr14+704591007045919070444634704446827047747070477663-0.487000.002440.06105excludedHepG2SF3A3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMOC1 is not avaliable on ENCORE database.