SH3BP1

General Information

Gene Name       : SH3BP1
Gene ID             : ENSG00000100092.22
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SH3BP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SH3BP1ENSG00000100092.2214.4339.8827.16ENCSR000AEF
HepG2SH3BP1ENSG00000100092.2227.1916.7421.96ENCSR985KAT
K562SH3BP1ENSG00000100092.2223.1824.2023.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SH3BP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SH3BP1 RNA is bound by 24 proteins.  







eCLIP assay for SH3BP1 is not avaliable on ENCORE database.





24 proteins are bound to SH3BP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223804625538046319+3'-UTR,5'-UTR,CDS,intron-Proximal3.807823.96535HepG2AQR
chr223806169338061773+3'-UTR,CDS3.414784.88774HepG2RBM15
chr223806212738062192+3'-UTR5.6403027.63263HepG2PCBP2
chr223806275138062798+3'-UTR3.490494.36276HepG2LARP4
chr223806257138062627+3'-UTR3.628763.73678HepG2UPF1
chr223806211838062187+3'-UTR3.828803.17235HepG2HNRNPK
chr223806210138062191+3'-UTR5.3914910.94465HepG2UPF1
chr223806283138062918+3'-UTR6.5969227.26004K562PABPC4
chr223805168738051778+3'-UTR,CDS,intron-Distal3.333215.40117HepG2DDX59
chr223806220038062276+3'-UTR4.358004.85526K562PCBP1
chr223804625438046314+3'-UTR,5'-UTR,CDS,intron-Proximal5.331157.81430K562AQR
chr223805183838051917+3'-UTR,intron-Distal,intron-Proximal4.358004.85526K562PCBP1
chr223806155138061585+3'-UTR,5'-UTR,CDS,intron-Proximal4.3918613.64756HepG2AQR
chr223806246938062571+3'-UTR4.0025710.09137HepG2UPF1
chr223806283038062857+3'-UTR3.463124.25556HepG2TIAL1
chr223806217038062275+3'-UTR3.220343.72310K562HNRNPK
chr223806283938062904+3'-UTR3.588706.68363K562TIA1
chr223806283138062897+3'-UTR4.306464.51679K562DDX6
chr223806257938062625+3'-UTR5.199438.41097K562UPF1
chr223806220638062285+3'-UTR4.0267111.29390HepG2AKAP1
chr223806219238062278+3'-UTR4.1673317.16113HepG2PCBP2
chr223806230438062381+3'-UTR3.779769.00887K562UPF1
chr223806198838062011+3'-UTR4.716465.81610HepG2DDX3X
chr223806283038062897+3'-UTR3.284784.39043HepG2AKAP1
chr223806150738061576+3'-UTR,5'-UTR,CDS,intron-Proximal3.814043.84691HepG2SF3B4
chr223806278538062831+3'-UTR5.3144313.04183K562PABPC4
chr223806282438062899+3'-UTR3.9520115.56300HepG2DDX55
chr223806267638062753+3'-UTR4.672055.45170HepG2AKAP1
chr223806248338062619+3'-UTR4.089907.46349HepG2AKAP1
chr223806212338062200+3'-UTR3.352546.48920K562UPF1
chr223806219138062283+3'-UTR3.6253312.43817HepG2UPF1
chr223806250638062561+3'-UTR4.362247.50817K562UPF1
chr223806283438062898+3'-UTR4.362247.50817K562UPF1
chr223806168838061762+3'-UTR,CDS3.975153.48187K562RBM15
chr223806238838062467+3'-UTR4.049189.37242K562UPF1
chr223805163038051750+3'-UTR,CDS,intron-Distal4.209276.93645K562PCBP1
chr223806256138062613+3'-UTR3.180534.11795K562YBX3
chr223806266938062738+3'-UTR3.002543.35239HepG2IGF2BP1
chr223804088838040964+5'-UTR,CDS3.843604.68902HepG2PPIG
chr223803570838035760+5'-UTR3.305544.00968HepG2DDX3X
chr223804332138043356+5'-UTR,CDS,intron-Proximal5.127123.79199HepG2PPIG
chr223804432738044381+5'-UTR,CDS4.808413.79199HepG2PPIG
chr223804349238043527+5'-UTR,CDS3.729434.96634HepG2PPIG
chr223804344138043483+5'-UTR,CDS,intron-Proximal5.553986.16445HepG2PPIG
chr223805144538051495+CDS,intron-Distal4.685484.91906HepG2DDX59
chr223805162938051687+CDS,intron-Distal3.584463.32156HepG2DDX59
chr223803712638037215+CDS,intron-Distal,intron-Proximal4.965239.76577HepG2PRPF8
chr223805134738051402+CDS,intron-Distal,intron-Proximal3.163294.14131HepG2DDX59
chr223805484338054936+CDS,intron-Distal3.087534.64546HepG2DHX30
chr223805511138055163+CDS,intron-Distal4.4575419.27291HepG2DDX3X
chr223805475638054866+5'-UTR,CDS,intron-Distal6.59391400.00000HepG2DDX3X
chr223805523138055255+CDS,intron-Distal3.287083.62497HepG2DHX30
chr223803591338035987+intron-Distal,intron-Proximal5.103316.75320K562AQR
chr223805486638054951+CDS,intron-Distal6.1303769.10355HepG2DDX3X
chr223805535938055400+CDS,intron-Distal,intron-Proximal3.150994.23709HepG2AQR
chr223805543438055548+intron-Distal,intron-Proximal3.387284.59965HepG2PRPF4
chr223805734438057456+intron-Distal3.794273.08314K562TARDBP
chr223805477338054928+5'-UTR,CDS,intron-Distal4.680595.93974HepG2UPF1
chr223805480638054949+CDS,intron-Distal3.100484.74029K562FTO
chr223805476238054901+5'-UTR,CDS,intron-Distal4.346928.45138K562DDX3X
chr223806149938061551+intron-Proximal4.8042125.65652HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SH3BP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SH3BP1 is not available on ENCORE database.

  • 115 RBPs can affect the levels of SH3BP1.  








The Knockdown/knockout RNA-Seq assay for SH3BP1 is not available on ENCORE database.





115 RBPs can affect the gene expression of SH3BP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SH3BP1ENSG00000100092.16238.93100925.88490-1.9542018.9814016.91390HepG2ABCF1
SH3BP1ENSG00000100092.16639.51150839.96150-0.393404.424703.69080HepG2ACO1
SH3BP1ENSG00000100092.16403.905201120.12700-1.471603.149202.58650HepG2AKAP1
SH3BP1ENSG00000100092.16367.79790843.89330-1.1981020.0780018.28590HepG2AKAP8L
SH3BP1ENSG00000100092.16390.65390835.03420-1.0959013.8730011.13860HepG2ATP5C1
SH3BP1ENSG00000100092.161398.600301107.552100.336504.322103.49790HepG2AUH
SH3BP1ENSG00000100092.16195.57530450.16580-1.202703.373702.71980HepG2BOP1
SH3BP1ENSG00000100092.16211.04960490.58680-1.216907.087705.92720HepG2CALR
SH3BP1ENSG00000100092.16418.46900839.76140-1.0049022.6684021.17460HepG2CKAP4
SH3BP1ENSG00000100092.16171.08110295.69880-0.789402.735601.66460HepG2CSTF2
SH3BP1ENSG00000100092.16548.34410776.83600-0.502506.783105.56640HepG2DDX19B
SH3BP1ENSG00000100092.16215.02260456.35910-1.085705.420704.50440HepG2DDX21
SH3BP1ENSG00000100092.16175.88010447.17530-1.346206.272204.90270HepG2DDX24
SH3BP1ENSG00000100092.16224.86080440.53320-0.970203.589602.14550HepG2DDX27
SH3BP1ENSG00000100092.16290.35060612.07840-1.0759012.5461010.58600HepG2DDX5
SH3BP1ENSG00000100092.162035.52610922.184501.142209.364808.30060HepG2DDX6
SH3BP1ENSG00000100092.16341.65130803.61100-1.2340026.0739024.51970HepG2DKC1
SH3BP1ENSG00000100092.16689.50740397.273200.7953010.160408.88150HepG2DNAJC21
SH3BP1ENSG00000100092.16548.41890393.860600.477503.410602.69990HepG2DNAJC2
SH3BP1ENSG00000100092.16278.47140636.36220-1.1923013.8458012.03020HepG2EEF2
SH3BP1ENSG00000100092.16330.48840530.52150-0.682805.225103.69680HepG2EFTUD2
SH3BP1ENSG00000100092.16440.55310702.10750-0.672406.096404.41460HepG2EIF2S2
SH3BP1ENSG00000100092.16278.78830516.59540-0.889907.285305.88110HepG2EIF3D
SH3BP1ENSG00000100092.16208.57360431.35290-1.048304.349303.03000HepG2EIF3G
SH3BP1ENSG00000100092.16226.31760978.57010-2.112305.086104.22130HepG2EIF4A3
SH3BP1ENSG00000100092.16370.28210953.43600-1.364502.965002.25420HepG2EIF4B
SH3BP1ENSG00000100092.16440.82930656.33750-0.574204.366503.35810HepG2EIF4G1
SH3BP1ENSG00000100092.16437.67730801.83260-0.873409.431907.60020HepG2ESF1
SH3BP1ENSG00000100092.16738.506801271.62290-0.7840017.0124015.72830HepG2ETF1
SH3BP1ENSG00000100092.16401.95830820.77690-1.0299015.9402014.03610HepG2EWSR1
SH3BP1ENSG00000100092.16492.18380934.85070-0.925508.263007.01280HepG2FIP1L1
SH3BP1ENSG00000100092.16256.28820459.96480-0.843806.811205.41050HepG2GEMIN5
SH3BP1ENSG00000100092.161417.09180801.912100.8213020.5371018.32300HepG2HDGF
SH3BP1ENSG00000100092.16214.25480401.08020-0.904604.582603.77900HepG2HNRNPA1
SH3BP1ENSG00000100092.16597.22730468.076600.351402.768802.05190HepG2HNRNPF
SH3BP1ENSG00000100092.16842.75550606.123800.475405.840904.89280HepG2HNRNPL
SH3BP1ENSG00000100092.16386.54200644.81050-0.738203.733102.64430HepG2HNRNPM
SH3BP1ENSG00000100092.16675.01040443.207200.606804.051703.32920HepG2HNRNPU
SH3BP1ENSG00000100092.16312.17400931.22300-1.576803.608202.84670HepG2IGF2BP2
SH3BP1ENSG00000100092.16265.74810874.70200-1.718703.091802.04970HepG2IGF2BP3
SH3BP1ENSG00000100092.16320.63850452.71610-0.497702.094301.44680HepG2ILF2
SH3BP1ENSG00000100092.16521.35650935.24620-0.843103.007002.13850HepG2LARP4
SH3BP1ENSG00000100092.16354.26310546.03430-0.624205.014403.37050HepG2LIN28B
SH3BP1ENSG00000100092.16341.54180521.72220-0.611203.865401.85730HepG2LSM11
SH3BP1ENSG00000100092.16261.74750988.73330-1.917404.344303.52570HepG2MAGOH
SH3BP1ENSG00000100092.16471.05990756.29520-0.683006.901805.68150HepG2MSI2
SH3BP1ENSG00000100092.16456.68320694.16950-0.604105.610203.37500HepG2NUP35
SH3BP1ENSG00000100092.16241.83640386.20840-0.675302.939701.30370HepG2PA2G4
SH3BP1ENSG00000100092.161213.57200524.372801.210507.294105.80630HepG2PABPC1
SH3BP1ENSG00000100092.16303.87970905.40240-1.575103.433102.63480HepG2PABPC4
SH3BP1ENSG00000100092.16535.31600395.299900.437302.142501.48580HepG2PPIL4
SH3BP1ENSG00000100092.16433.08400535.49220-0.306202.108301.42520HepG2PRPF4
SH3BP1ENSG00000100092.16168.52190363.02010-1.107104.749703.72370HepG2PRPF8
SH3BP1ENSG00000100092.16607.43930923.83870-0.604908.320907.47740HepG2PTBP1
SH3BP1ENSG00000100092.16445.32680668.50610-0.586108.216807.30830HepG2PUM1
SH3BP1ENSG00000100092.16393.35530855.55270-1.1210026.5024024.95640HepG2PUS1
SH3BP1ENSG00000100092.161181.130801000.444400.239401.871001.34260HepG2QKI
SH3BP1ENSG00000100092.161316.43450868.169900.600504.156403.13070HepG2RBM15
SH3BP1ENSG00000100092.16464.660501062.84040-1.1937026.5330025.25720HepG2RBM22
SH3BP1ENSG00000100092.16402.39950627.20500-0.640305.212803.83420HepG2RBM27
SH3BP1ENSG00000100092.16371.010201028.10650-1.4705038.9108037.40070HepG2NELFE
SH3BP1ENSG00000100092.16573.59370957.60910-0.7394012.0687010.91910HepG2RECQL
SH3BP1ENSG00000100092.16182.50400504.21470-1.4661019.3244017.84700HepG2RPLP0
SH3BP1ENSG00000100092.16248.88880502.66120-1.0141010.853309.73180HepG2RPS19
SH3BP1ENSG00000100092.16328.96690578.42810-0.814207.643506.35850HepG2RPS2
SH3BP1ENSG00000100092.16231.44050359.07270-0.633602.029101.34580HepG2RRP9
SH3BP1ENSG00000100092.16776.49130394.676900.9762013.5841012.31810HepG2SAFB2
SH3BP1ENSG00000100092.16204.46010504.51290-1.3031012.6057010.67810HepG2SERBP1
SH3BP1ENSG00000100092.16377.64620806.24220-1.0942010.123308.77040HepG2SF3A3
SH3BP1ENSG00000100092.16577.32330961.75480-0.7363011.9769010.88440HepG2SF3B4
SH3BP1ENSG00000100092.16718.511301200.43730-0.7405016.1006015.15430HepG2SRFBP1
SH3BP1ENSG00000100092.16309.611201003.89670-1.6971049.8386048.38090HepG2SRSF1
SH3BP1ENSG00000100092.16814.13600621.776700.388803.666902.96500HepG2SRSF5
SH3BP1ENSG00000100092.16998.74020816.751700.290102.562402.02660HepG2SRSF9
SH3BP1ENSG00000100092.16167.943901042.26060-2.63370106.95560105.00940HepG2SSB
SH3BP1ENSG00000100092.16531.46810865.60650-0.703704.081802.54400HepG2SSRP1
SH3BP1ENSG00000100092.16428.70320630.98850-0.557603.491102.44430HepG2SUPT6H
SH3BP1ENSG00000100092.16266.01060468.76110-0.817403.035502.33140HepG2SUPV3L1
SH3BP1ENSG00000100092.16504.34480902.43270-0.8394013.2347012.14500HepG2TAF15
SH3BP1ENSG00000100092.16240.05400435.89260-0.860602.220301.56100HepG2TARDBP
SH3BP1ENSG00000100092.16369.33940850.20910-1.202907.676205.99340HepG2TBRG4
SH3BP1ENSG00000100092.16291.75600430.53970-0.561402.623802.13450HepG2TIAL1
SH3BP1ENSG00000100092.16837.05030434.516100.9458012.9649011.87070HepG2TRIM56
SH3BP1ENSG00000100092.161021.05300615.215300.730802.046601.30610HepG2TUFM
SH3BP1ENSG00000100092.16294.12730799.52640-1.4427018.1547016.49270HepG2U2AF1
SH3BP1ENSG00000100092.16265.07930429.01350-0.694602.502401.55130HepG2UPF2
SH3BP1ENSG00000100092.16525.68760690.31520-0.393002.368401.80480HepG2UTP3
SH3BP1ENSG00000100092.16133.78530528.46580-1.9819043.3300041.33590HepG2ZC3H8
SH3BP1ENSG00000100092.16256.92980786.37680-1.6138018.3698017.26790HepG2ZNF622
SH3BP1ENSG00000100092.16485.70130671.99500-0.468403.272101.92600K562ABCF1
SH3BP1ENSG00000100092.16978.51240708.137300.466505.212804.47390K562AGGF1
SH3BP1ENSG00000100092.16919.40980736.868400.319202.406101.79650K562AKAP8L
SH3BP1ENSG00000100092.16383.966601073.49310-1.4833025.9410024.34310K562AQR
SH3BP1ENSG00000100092.16257.21850373.78750-0.539202.671701.81500K562BOP1
SH3BP1ENSG00000100092.16530.46770378.088200.488403.293801.88210K562CIRBP
SH3BP1ENSG00000100092.16543.10570401.103400.437202.515501.51340K562CSTF2
SH3BP1ENSG00000100092.161173.672001591.15550-0.439005.205003.85960K562CELF1
SH3BP1ENSG00000100092.16716.85190572.020800.325502.593401.34220K562DDX6
SH3BP1ENSG00000100092.16344.06880233.449200.559503.449702.56690K562EIF3G
SH3BP1ENSG00000100092.16442.85250589.44920-0.412502.639801.83850K562EIF4A3
SH3BP1ENSG00000100092.16979.624001294.03970-0.401604.971803.73030K562EIF4G2
SH3BP1ENSG00000100092.16331.99840551.17400-0.731305.774904.03460K562FKBP4
SH3BP1ENSG00000100092.1625.01670144.95570-2.534606.589705.39410K562G3BP2
SH3BP1ENSG00000100092.16796.419001019.91840-0.356902.082201.41970K562GRSF1
SH3BP1ENSG00000100092.16692.615701004.27610-0.536004.470203.10950K562HNRNPA1
SH3BP1ENSG00000100092.16407.05980634.23860-0.639804.722403.96300K562HNRNPC
SH3BP1ENSG00000100092.16761.15160353.068801.108104.257502.86830K562IGF2BP2
SH3BP1ENSG00000100092.16432.92460607.14150-0.487903.024801.45980K562ILF3
SH3BP1ENSG00000100092.16203.41810324.03030-0.671703.116402.11860K562KRR1
SH3BP1ENSG00000100092.161076.662001379.31160-0.357402.821701.67850K562MSI2
SH3BP1ENSG00000100092.16651.32700828.43160-0.347003.325202.44200K562MTPAP
SH3BP1ENSG00000100092.16584.06570362.558500.687804.526902.75670K562PCBP1
SH3BP1ENSG00000100092.16409.03350887.52190-1.1176014.1613012.31260K562PCBP3
SH3BP1ENSG00000100092.16402.92250680.73180-0.756608.994307.58210K562POLR2G
SH3BP1ENSG00000100092.16696.48530548.326500.345002.023001.32520K562PPIG
SH3BP1ENSG00000100092.16718.30640360.238100.9955014.8806013.40520K562PTBP1
SH3BP1ENSG00000100092.16914.726601411.89020-0.626206.331105.09820K562PUF60
SH3BP1ENSG00000100092.16966.060801501.80120-0.636509.923407.83930K562PUM1
SH3BP1ENSG00000100092.161230.396001471.43270-0.258102.355601.46790K562PUM2
SH3BP1ENSG00000100092.16915.05570712.006200.361901.964001.44950K562RBM15
SH3BP1ENSG00000100092.16217.95350137.249000.667103.209301.76990K562RBM25
SH3BP1ENSG00000100092.16469.16160336.689200.478602.838101.44280K562RBM34
SH3BP1ENSG00000100092.16438.86510627.15210-0.515003.707902.02190K562SDAD1
SH3BP1ENSG00000100092.16865.70340507.962200.769102.657301.39020K562SFPQ
SH3BP1ENSG00000100092.16138.17270214.36830-0.633602.977501.32920K562SND1
SH3BP1ENSG00000100092.16617.35960353.187400.805606.363405.30280K562SRSF1
SH3BP1ENSG00000100092.16594.07160333.643000.832208.569506.62340K562SRSF5
SH3BP1ENSG00000100092.16456.88470633.78710-0.472203.194801.71630K562SSRP1
SH3BP1ENSG00000100092.16786.39750357.375601.137709.142007.75350K562TARDBP
SH3BP1ENSG00000100092.16618.83310344.748300.843906.265404.96000K562TIA1
SH3BP1ENSG00000100092.16647.01090338.473800.934607.431305.43040K562TRA2A
SH3BP1ENSG00000100092.1670.43240144.93350-1.041102.293601.56360K562U2AF2
SH3BP1ENSG00000100092.16856.754101209.28620-0.497205.025803.80770K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SH3BP1 is not available on ENCORE database.





1 RBPs can affect the splicing of SH3BP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESH3BP1ENSG00000100092.16chr22+380371323803717538035056380358533803738038037485-0.356000.002270.08876excludedHepG2PCBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SH3BP1 is not avaliable on ENCORE database.