SERINC1

General Information

Gene Name : SERINC1
Gene ID : ENSG00000111897.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SERINC1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SERINC1	ENSG00000111897.6	26.93	24.19	25.56	ENCSR000AEF
HepG2	SERINC1	ENSG00000111897.6	45.25	74.45	59.85	ENCSR985KAT
K562	SERINC1	ENSG00000111897.6	34.59	31.03	32.81	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SERINC1 is not avaliable on ENCORE database.

Proteins bound to RNA

SERINC1 RNA is bound by 25 proteins.

CanvasJS.com

eCLIP assay for SERINC1 is not avaliable on ENCORE database.

25 proteins are bound to SERINC1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	122792840	122792928	-	5'-UTR,CDS,intron-Distal	4.01244	37.00626	HepG2	DDX3X
chr6	122768006	122768084	-	CDS,intron-Distal	4.55279	30.61592	HepG2	SND1
chr6	122766244	122766305	-	CDS,intron-Distal	5.85495	25.52944	K562	SND1
chr6	122767918	122767967	-	CDS,intron-Distal,intron-Proximal	5.54890	23.61870	K562	SND1
chr6	122773086	122773165	-	CDS,intron-Distal	4.20164	20.38384	K562	SND1
chr6	122766201	122766244	-	CDS,intron-Distal	5.45280	20.12789	K562	SND1
chr6	122774938	122774993	-	CDS,intron-Distal	4.62202	19.67551	K562	SND1
chr6	122768316	122768384	-	CDS,intron-Distal	5.35428	19.17910	K562	SND1
chr6	122766038	122766138	-	3'-UTR,intron-Distal	3.97048	18.30154	HepG2	FUBP3
chr6	122777642	122777710	-	CDS,intron-Distal	5.30413	18.09523	K562	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 77 entries

eCLIP assay for SERINC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SERINC1 is not available on ENCORE database.
113 RBPs can affect the levels of SERINC1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SERINC1 is not available on ENCORE database.

113 RBPs can affect the gene expression of SERINC1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SERINC1	ENSG00000111897.6	3618.33070	10634.84380	-1.55540	43.95830	41.62510	HepG2	MAGOH
SERINC1	ENSG00000111897.6	1195.58900	3099.81820	-1.37450	43.25860	39.83770	K562	MAGOH
SERINC1	ENSG00000111897.6	6746.21840	11234.00200	-0.73570	33.89520	32.45780	HepG2	NELFE
SERINC1	ENSG00000111897.6	12335.49200	6840.18910	0.85060	32.47460	31.08640	HepG2	RBM22
SERINC1	ENSG00000111897.6	6486.92410	10462.92170	-0.68970	30.79740	29.14950	HepG2	RECQL
SERINC1	ENSG00000111897.6	7389.58950	3479.36110	1.08660	29.34200	27.63480	K562	AQR
SERINC1	ENSG00000111897.6	4413.38180	2614.91940	0.75500	28.80270	27.06520	K562	AGGF1
SERINC1	ENSG00000111897.6	6211.61240	9920.34090	-0.67540	28.40130	26.80130	HepG2	PCBP1
SERINC1	ENSG00000111897.6	6447.88950	10094.30160	-0.64660	24.83520	23.50710	HepG2	PTBP1
SERINC1	ENSG00000111897.6	11919.06550	6794.39900	0.81080	24.84440	22.96100	HepG2	PUM2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 128 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SERINC1 is not available on ENCORE database.

2 RBPs can affect the splicing of SERINC1 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	is_included	Cell Line	Affected by RBP
SE	SERINC1	ENSG00000111897.6	chr6	-	122772808	122772899			122768265	122768410	122774914	122775052	-0.07700	excluded	HepG2	U2AF1
SE	SERINC1	ENSG00000111897.6	chr6	-	122772808	122772899			122768265	122768410	122773032	122773202	-0.09100	excluded	K562	AQR
MXE	SERINC1	ENSG00000111897.6	chr6	-	122768283	122768410	122772808	122772899	122767918	122768149	122773032	122773202	-0.11100	2included	K562	AQR

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SERINC1

General Information

Functions

Localization

Domains (AlphaFold: SERINC1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SERINC1 is not avaliable on ENCORE database.

25 proteins are bound to SERINC1 RNA:

eCLIP assay for SERINC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SERINC1 is not available on ENCORE database.

113 RBPs can affect the gene expression of SERINC1 :

The Knockdown/knockout RNA-Seq assay for SERINC1 is not available on ENCORE database.

2 RBPs can affect the splicing of SERINC1 :

The Knockdown/knockout RNA-Seq assay for SERINC1 is not avaliable on ENCORE database.