SERINC1

General Information

Gene Name       : SERINC1
Gene ID             : ENSG00000111897.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SERINC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SERINC1ENSG00000111897.626.9324.1925.56ENCSR000AEF
HepG2SERINC1ENSG00000111897.645.2574.4559.85ENCSR985KAT
K562SERINC1ENSG00000111897.634.5931.0332.81ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SERINC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SERINC1 RNA is bound by 25 proteins.  







eCLIP assay for SERINC1 is not avaliable on ENCORE database.





25 proteins are bound to SERINC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6122765169122765261-3'-UTR,intron-Distal3.154124.79993K562IGF2BP2
chr6122765916122765971-3'-UTR,intron-Distal3.633354.91603HepG2LIN28B
chr6122765637122765722-3'-UTR,intron-Distal3.6502910.35986HepG2UPF1
chr6122764524122764589-3'-UTR,intron-Distal3.274803.52775K562FAM120A
chr6122766041122766114-3'-UTR,intron-Distal3.996993.03253HepG2TIA1
chr6122765951122766038-3'-UTR,intron-Distal3.4925510.08101HepG2FUBP3
chr6122765942122766008-3'-UTR,intron-Distal6.1394610.21115HepG2SUB1
chr6122766011122766028-3'-UTR,intron-Distal3.257173.07801K562UPF1
chr6122766170122766212-3'-UTR,CDS,intron-Distal3.334804.86553HepG2FUBP3
chr6122764515122764597-3'-UTR,intron-Distal5.063177.30650K562IGF2BP1
chr6122766056122766095-3'-UTR,intron-Distal4.882465.26336K562DDX6
chr6122764520122764612-3'-UTR,intron-Distal4.511235.69035HepG2TIAL1
chr6122764631122764759-3'-UTR,intron-Distal3.7588011.52562HepG2FUBP3
chr6122765773122765820-3'-UTR,intron-Distal3.372378.29143HepG2LIN28B
chr6122766048122766148-3'-UTR,intron-Distal3.158425.62902HepG2TIAL1
chr6122766033122766120-3'-UTR,intron-Distal4.295643.28485K562CPSF6
chr6122764521122764572-3'-UTR,intron-Distal5.0228215.72151HepG2FUBP3
chr6122766008122766024-3'-UTR,intron-Distal5.822737.22380HepG2SUB1
chr6122765173122765311-3'-UTR,intron-Distal3.1097811.96993HepG2UPF1
chr6122766038122766138-3'-UTR,intron-Distal3.9704818.30154HepG2FUBP3
chr6122765052122765127-3'-UTR,intron-Distal3.5453712.99000K562UPF1
chr6122764572122764614-3'-UTR,intron-Distal4.437859.73896HepG2FUBP3
chr6122765566122765637-3'-UTR,intron-Distal3.170936.85066HepG2UPF1
chr6122766024122766035-3'-UTR,intron-Distal4.287194.10177HepG2SUB1
chr6122765451122765538-3'-UTR,intron-Distal3.172846.16999HepG2LIN28B
chr6122792843122792906-5'-UTR,CDS,intron-Distal3.6917815.00953HepG2RPS3
chr6122792840122792928-5'-UTR,CDS,intron-Distal4.0124437.00626HepG2DDX3X
chr6122792843122792933-5'-UTR,CDS,intron-Distal3.1832810.59917K562DDX3X
chr6122792841122792930-5'-UTR,CDS,intron-Distal4.489006.50509K562SRSF1
chr6122774938122774993-CDS,intron-Distal4.6220219.67551K562SND1
chr6122779740122779828-CDS,intron-Distal,intron-Proximal3.788436.49759HepG2DDX3X
chr6122772858122772906-CDS,intron-Distal,intron-Proximal5.065487.76290K562U2AF1
chr6122773165122773201-CDS,intron-Distal3.6824710.77861K562SND1
chr6122774855122774930-CDS,intron-Distal,intron-Proximal4.603314.65563K562AQR
chr6122766270122766303-CDS,intron-Distal3.8679411.21695HepG2SND1
chr6122767917122767957-CDS,intron-Distal,intron-Proximal6.0168214.18362HepG2SND1
chr6122766201122766244-CDS,intron-Distal5.4528020.12789K562SND1
chr6122777728122777752-CDS,intron-Distal3.363007.57294K562KHSRP
chr6122766280122766330-CDS,intron-Distal4.192203.83824K562BUD13
chr6122766244122766305-CDS,intron-Distal5.8549525.52944K562SND1
chr6122773096122773153-CDS,intron-Distal4.114938.90316HepG2SND1
chr6122766199122766245-CDS,intron-Distal3.9697611.47922HepG2SND1
chr6122772809122772877-CDS,intron-Distal3.6322716.87112K562SND1
chr6122774993122775025-CDS,intron-Distal4.8009116.82290K562SND1
chr6122768295122768369-CDS,intron-Distal4.3417114.90028HepG2SND1
chr6122768265122768275-CDS,intron-Distal,intron-Proximal4.8022012.78862K562SND1
chr6122768390122768410-CDS,intron-Distal3.929088.25779K562SND1
chr6122779662122779727-CDS,intron-Distal,intron-Proximal3.201923.58517K562TARDBP
chr6122768316122768384-CDS,intron-Distal5.3542819.17910K562SND1
chr6122779683122779735-CDS,intron-Distal4.075679.04183HepG2FUBP3
chr6122768006122768084-CDS,intron-Distal4.5527930.61592HepG2SND1
chr6122767918122767967-CDS,intron-Distal,intron-Proximal5.5489023.61870K562SND1
chr6122768006122768088-CDS,intron-Distal4.4066114.03682K562SND1
chr6122775298122775361-CDS,intron-Distal3.6621513.15410K562SND1
chr6122768105122768150-CDS,intron-Distal,intron-Proximal4.0114113.70287K562SND1
chr6122766303122766324-CDS,intron-Distal4.063387.37561HepG2SND1
chr6122777625122777655-CDS,intron-Distal,intron-Proximal4.728453.02397HepG2SND1
chr6122774915122774931-CDS,intron-Distal3.780598.25779K562SND1
chr6122773186122773258-CDS,intron-Distal,intron-Proximal5.341365.58150K562SF3B4
chr6122775025122775047-CDS,intron-Distal3.553578.84022K562SND1
chr6122777642122777710-CDS,intron-Distal5.3041318.09523K562SND1
chr6122766245122766270-CDS,intron-Distal3.7675911.21695HepG2SND1
chr6122768024122768067-CDS,intron-Distal3.651666.47483K562PUM2
chr6122773086122773165-CDS,intron-Distal4.2016420.38384K562SND1
chr6122777681122777728-CDS,intron-Distal3.176036.28940K562KHSRP
chr6122775000122775045-CDS,intron-Distal5.2963715.04020HepG2SND1
chr6122766305122766324-CDS,intron-Distal5.1310416.41604K562SND1
chr6122772842122772908-CDS,intron-Distal,intron-Proximal4.5217210.61450K562U2AF2
chr6122790054122790167-intron-Distal4.369003.80778HepG2QKI
chr6122777116122777184-intron-Distal4.651065.19823K562KHSRP
chr6122780677122780771-intron-Distal3.831493.66668K562KHSRP
chr6122773388122773450-intron-Distal4.636345.20135HepG2QKI
chr6122776153122776226-intron-Distal4.9181710.51113K562QKI
chr6122784047122784146-intron-Distal3.531155.61949K562KHSRP
chr6122776271122776330-intron-Distal4.000653.60879K562HNRNPL
chr6122776150122776219-intron-Distal3.822323.16986HepG2QKI
chr6122791765122791878-intron-Distal4.399075.85485K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SERINC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SERINC1 is not available on ENCORE database.

  • 113 RBPs can affect the levels of SERINC1.  








The Knockdown/knockout RNA-Seq assay for SERINC1 is not available on ENCORE database.





113 RBPs can affect the gene expression of SERINC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SERINC1ENSG00000111897.66730.969905368.574800.326207.909806.98920HepG2ACO1
SERINC1ENSG00000111897.67530.428205393.698100.4814013.6275012.10260HepG2AKAP8L
SERINC1ENSG00000111897.610638.642107128.327800.5776010.247809.06490HepG2AUH
SERINC1ENSG00000111897.62752.065904380.16310-0.670505.934704.53470HepG2BCCIP
SERINC1ENSG00000111897.65526.296703806.430400.537806.531005.21340HepG2BCLAF1
SERINC1ENSG00000111897.66710.621504453.797500.591309.213608.20060HepG2BOP1
SERINC1ENSG00000111897.64960.448904002.002200.309603.517402.13840HepG2BUD13
SERINC1ENSG00000111897.68444.814604494.367800.9098020.4553018.71930HepG2CALR
SERINC1ENSG00000111897.65662.231904088.969000.469504.621803.75350HepG2CPSF6
SERINC1ENSG00000111897.65182.714804398.985800.236402.342101.32600HepG2CPSF7
SERINC1ENSG00000111897.69108.863506292.983600.5334014.8102013.55580HepG2CELF1
SERINC1ENSG00000111897.66395.744504593.240300.477507.733606.21790HepG2DDX24
SERINC1ENSG00000111897.616767.7990011546.332000.538206.393505.48230HepG2DDX3X
SERINC1ENSG00000111897.65154.812304306.396000.259302.002701.33340HepG2DDX55
SERINC1ENSG00000111897.66714.667904643.278300.532102.861901.86700HepG2DDX59
SERINC1ENSG00000111897.66592.083504798.686000.458005.310803.95400HepG2DDX5
SERINC1ENSG00000111897.65463.726404480.291100.286202.671901.70470HepG2DHX30
SERINC1ENSG00000111897.63447.850604604.03360-0.4172012.9072011.60890HepG2DNAJC2
SERINC1ENSG00000111897.66687.977304322.478600.629604.588603.15340HepG2AGO1
SERINC1ENSG00000111897.64367.081103467.980800.332502.828301.91640HepG2EIF3D
SERINC1ENSG00000111897.65349.504906675.62410-0.319506.831205.62170HepG2EIF4G1
SERINC1ENSG00000111897.67742.324806394.887600.275702.224801.48900HepG2EIF4G2
SERINC1ENSG00000111897.613160.431708183.716700.6853024.1974022.72140HepG2ETF1
SERINC1ENSG00000111897.66221.934105245.950400.246102.367201.59530HepG2EWSR1
SERINC1ENSG00000111897.64684.036403584.692700.385803.684802.22780HepG2FKBP4
SERINC1ENSG00000111897.67600.227404095.686000.891802.246201.34060HepG2FTO
SERINC1ENSG00000111897.65934.225404914.336000.272002.812802.01950HepG2FUBP3
SERINC1ENSG00000111897.62826.861706005.29250-1.0870011.400409.36420HepG2FUS
SERINC1ENSG00000111897.66545.5638010631.13560-0.6997010.504609.24130HepG2FXR1
SERINC1ENSG00000111897.66432.059805113.970500.330702.947501.89380HepG2GNB2L1
SERINC1ENSG00000111897.66594.589504635.549100.508403.681202.95140HepG2GPKOW
SERINC1ENSG00000111897.68522.174805752.521600.566903.304901.77670HepG2HLTF
SERINC1ENSG00000111897.68239.837806218.798500.405909.752808.19420HepG2HNRNPA2B1
SERINC1ENSG00000111897.65044.350404390.387600.200202.984602.24170HepG2HNRNPF
SERINC1ENSG00000111897.67902.841309985.58790-0.337503.379502.61030HepG2HNRNPK
SERINC1ENSG00000111897.66825.599506164.291300.146902.130801.52940HepG2HNRNPL
SERINC1ENSG00000111897.68461.886404423.755100.9356016.5018015.14510HepG2HNRNPLL
SERINC1ENSG00000111897.63844.766105181.92880-0.4306010.836409.70340HepG2HNRNPU
SERINC1ENSG00000111897.64536.363905293.17970-0.222604.458303.54610HepG2ILF2
SERINC1ENSG00000111897.65928.887004907.475900.272706.482404.95520HepG2KIF1C
SERINC1ENSG00000111897.63618.3307010634.84380-1.5554043.9583041.62510HepG2MAGOH
SERINC1ENSG00000111897.66076.8053010694.48660-0.8155011.8840010.64180HepG2MATR3
SERINC1ENSG00000111897.65324.772803665.508500.538608.580606.50350HepG2NAA15
SERINC1ENSG00000111897.68108.3273010946.50000-0.433004.072303.30880HepG2NCBP2
SERINC1ENSG00000111897.65410.543206710.05590-0.310604.258203.31250HepG2NOL12
SERINC1ENSG00000111897.65472.841503922.226000.480502.983202.20660HepG2NSUN2
SERINC1ENSG00000111897.610041.390406828.567000.556203.241502.27640HepG2PABPC1
SERINC1ENSG00000111897.66211.612409920.34090-0.6754028.4013026.80130HepG2PCBP1
SERINC1ENSG00000111897.67974.480705685.146800.488103.147302.04050HepG2PCBP2
SERINC1ENSG00000111897.64048.323004621.87760-0.191202.044401.40230HepG2PPIL4
SERINC1ENSG00000111897.64108.017203267.133500.330305.958004.86780HepG2PRPF4
SERINC1ENSG00000111897.65386.050203323.199200.6966010.900909.43900HepG2PRPF8
SERINC1ENSG00000111897.66447.8895010094.30160-0.6466024.8352023.50710HepG2PTBP1
SERINC1ENSG00000111897.64960.643306405.21530-0.368704.621103.87390HepG2PUF60
SERINC1ENSG00000111897.611919.065506794.399000.8108024.8444022.96100HepG2PUM2
SERINC1ENSG00000111897.69104.1498010932.41240-0.264003.678002.97370HepG2QKI
SERINC1ENSG00000111897.610484.365805487.064000.934008.090106.92360HepG2RAVER1
SERINC1ENSG00000111897.612335.492006840.189100.8506032.4746031.08640HepG2RBM22
SERINC1ENSG00000111897.612516.750109921.853900.335104.246103.42490HepG2RBM25
SERINC1ENSG00000111897.66746.2184011234.00200-0.7357033.8952032.45780HepG2NELFE
SERINC1ENSG00000111897.66486.9241010462.92170-0.6897030.7974029.14950HepG2RECQL
SERINC1ENSG00000111897.67495.898604729.082300.664408.925707.80640HepG2RPLP0
SERINC1ENSG00000111897.64885.912007501.29110-0.618505.495904.36050HepG2RPS3A
SERINC1ENSG00000111897.64886.516803287.446000.571706.166805.04230HepG2RRP9
SERINC1ENSG00000111897.66872.283004378.865400.650105.286704.33360HepG2SF3B1
SERINC1ENSG00000111897.67325.9724010509.49990-0.5206018.0941016.78480HepG2SF3B4
SERINC1ENSG00000111897.67282.892706141.313600.245905.411504.48570HepG2SLBP
SERINC1ENSG00000111897.64267.466605381.67060-0.334709.932408.83310HepG2SMN1
SERINC1ENSG00000111897.614082.308404872.176101.531106.805505.57440HepG2SNRNP70
SERINC1ENSG00000111897.67497.7118010969.63080-0.5490022.7179021.64440HepG2SRSF1
SERINC1ENSG00000111897.68981.554906324.048200.5060015.6393014.32190HepG2SRSF5
SERINC1ENSG00000111897.65636.416104313.309000.385909.242108.09960HepG2SRSF7
SERINC1ENSG00000111897.67586.534405127.584100.565104.163602.67410HepG2SUB1
SERINC1ENSG00000111897.65176.046003642.225900.506908.290806.72560HepG2SUPT6H
SERINC1ENSG00000111897.68170.657204287.288000.9303016.9481015.52470HepG2SUPV3L1
SERINC1ENSG00000111897.68424.508609859.89900-0.227003.128302.53720HepG2TAF15
SERINC1ENSG00000111897.65715.191404310.773000.406804.133803.26960HepG2TARDBP
SERINC1ENSG00000111897.64487.957702873.824300.643008.146006.61440HepG2TFIP11
SERINC1ENSG00000111897.63931.128605035.45260-0.357205.203004.56190HepG2TIAL1
SERINC1ENSG00000111897.63800.892005080.20770-0.4185010.128009.15300HepG2TRIM56
SERINC1ENSG00000111897.64171.728504964.76450-0.251104.226903.51160HepG2UTP3
SERINC1ENSG00000111897.63078.236304220.35470-0.455303.174902.39990HepG2XRN2
SERINC1ENSG00000111897.64880.567603224.228100.5980017.1475015.72080HepG2ZC3H8
SERINC1ENSG00000111897.64067.840105655.63030-0.4754018.6411017.53460HepG2ZNF622
SERINC1ENSG00000111897.64413.381802614.919400.7550028.8027027.06520K562AGGF1
SERINC1ENSG00000111897.64103.117102720.934400.592509.162307.89290K562AKAP8L
SERINC1ENSG00000111897.67389.589503479.361101.0866029.3420027.63480K562AQR
SERINC1ENSG00000111897.63359.134202854.900400.234502.580201.69990K562ATP5C1
SERINC1ENSG00000111897.62366.012601864.059500.343902.793201.91560K562BOP1
SERINC1ENSG00000111897.66284.455904959.479100.341504.444603.20010K562CELF1
SERINC1ENSG00000111897.62183.988001619.928500.430903.116501.75130K562EEF2
SERINC1ENSG00000111897.61674.174102032.69060-0.279902.715101.57760K562EIF4B
SERINC1ENSG00000111897.61932.606402347.27410-0.280402.211401.65890K562FXR1
SERINC1ENSG00000111897.63444.536502439.105600.497903.132202.37160K562G3BP2
SERINC1ENSG00000111897.64250.825802616.210400.700203.452102.04390K562HNRNPA2B1
SERINC1ENSG00000111897.61015.309501458.49080-0.522605.971204.21120K562HNRNPF
SERINC1ENSG00000111897.64371.752302887.618700.598205.616604.34760K562KIF1C
SERINC1ENSG00000111897.61195.589003099.81820-1.3745043.2586039.83770K562MAGOH
SERINC1ENSG00000111897.63476.541902764.139500.330702.977401.85260K562MAK16
SERINC1ENSG00000111897.63925.208803234.858500.279002.662801.77540K562MBNL1
SERINC1ENSG00000111897.6873.326501847.21900-1.0808021.2441018.77470K562METAP2
SERINC1ENSG00000111897.65353.806204298.648800.316602.841601.69450K562MSI2
SERINC1ENSG00000111897.63992.531202267.399200.816203.111202.16770K562NAA15
SERINC1ENSG00000111897.6963.758901541.67970-0.677807.216904.94420K562NONO
SERINC1ENSG00000111897.63527.132302288.503100.624002.876501.86110K562PABPN1
SERINC1ENSG00000111897.62665.149501961.698600.442003.813702.83670K562PCBP3
SERINC1ENSG00000111897.62045.203401504.687200.442705.880404.71670K562POLR2G
SERINC1ENSG00000111897.62645.420001523.244000.7962012.9253011.29190K562PRPF8
SERINC1ENSG00000111897.61065.420801464.35460-0.458804.010502.89420K562PSIP1
SERINC1ENSG00000111897.61725.330603011.65680-0.8037017.7474016.13890K562PTBP1
SERINC1ENSG00000111897.65744.149804400.198600.384404.296303.28550K562PUF60
SERINC1ENSG00000111897.65448.489002698.476301.0136022.6504021.11570K562PUS1
SERINC1ENSG00000111897.64417.189002629.212200.7484018.0492016.50190K562RBM15
SERINC1ENSG00000111897.6924.962901336.07360-0.530506.425304.91540K562RCC2
SERINC1ENSG00000111897.62116.317101551.798600.447503.809602.84760K562RPS19
SERINC1ENSG00000111897.61840.021802286.15280-0.313202.205501.32090K562RPS3
SERINC1ENSG00000111897.61626.005702199.96150-0.436106.915505.67260K562SF3A3
SERINC1ENSG00000111897.62282.884801799.626500.343102.321801.43940K562SF3B1
SERINC1ENSG00000111897.6979.664801266.55800-0.370602.917001.85450K562SRFBP1
SERINC1ENSG00000111897.61478.959402253.90910-0.6078017.1775015.12810K562SRPK2
SERINC1ENSG00000111897.61786.561602207.14110-0.305002.800201.74030K562SRSF4
SERINC1ENSG00000111897.63130.113602429.342400.365503.368301.84740K562SSRP1
SERINC1ENSG00000111897.64450.081002875.054300.630102.705701.30300K562SUPT6H
SERINC1ENSG00000111897.62392.604302882.31980-0.268602.642501.84340K562TIA1
SERINC1ENSG00000111897.63170.370802363.670800.423503.408102.16680K562U2AF1
SERINC1ENSG00000111897.62882.982102441.358700.239802.200801.48470K562U2AF2
SERINC1ENSG00000111897.61746.927702363.98860-0.436408.755307.56430K562UPF1
SERINC1ENSG00000111897.63144.505203918.99620-0.317702.439101.63750K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SERINC1 is not available on ENCORE database.





2 RBPs can affect the splicing of SERINC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESERINC1ENSG00000111897.6chr6-122772808122772899122768265122768410122774914122775052-0.077000.000000.00000excludedHepG2U2AF1
SESERINC1ENSG00000111897.6chr6-122772808122772899122768265122768410122773032122773202-0.091000.000000.00000excludedK562AQR
MXESERINC1ENSG00000111897.6chr6-122768283122768410122772808122772899122767918122768149122773032122773202-0.111000.000000.000002includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SERINC1 is not avaliable on ENCORE database.