SCAMP1

General Information

Gene Name       : SCAMP1
Gene ID             : ENSG00000085365.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCAMP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCAMP1ENSG00000085365.1711.138.799.96ENCSR000AEF
HepG2SCAMP1ENSG00000085365.1710.4513.3511.90ENCSR985KAT
K562SCAMP1ENSG00000085365.179.529.309.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCAMP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCAMP1 RNA is bound by 13 proteins.  







eCLIP assay for SCAMP1 is not avaliable on ENCORE database.





13 proteins are bound to SCAMP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr57777249277772585+3'-UTR3.989103.83925K562YBX3
chr57777317277773234+3'-UTR3.168583.65035K562PUM2
chr57777402277774088+3'-UTR6.8642712.17532K562PUM2
chr57777403777774130+3'-UTR3.290804.52210K562KHSRP
chr57777414677774189+3'-UTR5.788744.37209K562PUM2
chr57777401677774100+3'-UTR4.601054.72618HepG2FUBP3
chr57777322377773392+3'-UTR3.147833.81856K562IGF2BP1
chr57777391777774005+3'-UTR3.9921312.28296K562PUM2
chr57765644777656549+5'-UTR,CDS6.0006310.19736K562DDX3X
chr57765640977656508+5'-UTR,CDS5.097718.90399HepG2DDX3X
chr57771134377711439+CDS,intron-Proximal3.952773.06406HepG2IGF2BP1
chr57771770077717706+CDS,intron-Distal3.429983.54620HepG2LIN28B
chr57771767577717777+CDS,intron-Distal5.8773916.65090K562LIN28B
chr57771459777714652+CDS,intron-Proximal3.078763.67697K562YBX3
chr57771770677717755+CDS,intron-Distal4.529404.01886HepG2LIN28B
chr57771235977712473+CDS,intron-Proximal3.319365.63425HepG2BCLAF1
chr57772960577729697+intron-Distal3.905606.25619HepG2SUGP2
chr57769694677697009+intron-Distal3.903793.01445K562EXOSC5
chr57775663477756708+intron-Distal3.838785.36899HepG2PTBP1
chr57774540677745548+intron-Distal4.125204.07352K562KHSRP
chr57774370277743884+intron-Distal4.425384.83379HepG2HNRNPK
chr57769049177690594+intron-Distal3.280443.83822HepG2PTBP1
chr57772790277728001+intron-Distal4.571074.85866HepG2QKI
chr57772833477728393+intron-Distal4.296254.36036HepG2SUGP2
chr57772996777730028+intron-Distal4.457215.35792HepG2SUGP2
chr57775664777756721+intron-Distal5.046804.90095K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCAMP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCAMP1 is not available on ENCORE database.

  • 98 RBPs can affect the levels of SCAMP1.  








The Knockdown/knockout RNA-Seq assay for SCAMP1 is not available on ENCORE database.





98 RBPs can affect the gene expression of SCAMP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCAMP1ENSG00000085365.131043.73060789.272900.403102.931901.83370HepG2AATF
SCAMP1ENSG00000085365.131573.694202037.96550-0.373002.378001.88040HepG2AKAP1
SCAMP1ENSG00000085365.131794.066301377.511100.381105.785904.85470HepG2AUH
SCAMP1ENSG00000085365.13428.99860752.37400-0.810506.020804.61250HepG2BCCIP
SCAMP1ENSG00000085365.131413.54650995.283200.506004.307303.36990HepG2CALR
SCAMP1ENSG00000085365.131078.109701602.07750-0.571405.702504.61690HepG2CIRBP
SCAMP1ENSG00000085365.13519.77520935.02650-0.847107.548606.55300HepG2CKAP4
SCAMP1ENSG00000085365.131119.09930821.290400.446303.224502.48820HepG2CPSF6
SCAMP1ENSG00000085365.13621.177801333.16040-1.1018016.1606014.62580HepG2DAZAP1
SCAMP1ENSG00000085365.13576.21190864.86490-0.585904.668803.62290HepG2DDX19B
SCAMP1ENSG00000085365.13682.32790886.94150-0.378403.426602.13480HepG2DDX1
SCAMP1ENSG00000085365.131308.331401676.84950-0.358002.236901.67620HepG2DDX6
SCAMP1ENSG00000085365.13666.41770894.62840-0.424903.137902.42350HepG2DKC1
SCAMP1ENSG00000085365.13621.93080862.04560-0.471006.614705.66690HepG2DNAJC2
SCAMP1ENSG00000085365.13585.45720938.07580-0.680106.222404.89270HepG2EEF2
SCAMP1ENSG00000085365.13591.46390782.10640-0.403102.549701.48310HepG2EFTUD2
SCAMP1ENSG00000085365.131150.649701612.22290-0.486604.152603.43450HepG2EIF2S1
SCAMP1ENSG00000085365.13564.05950761.55670-0.433102.477401.61720HepG2EIF3D
SCAMP1ENSG00000085365.13835.372801781.80540-1.0928015.5453014.04590HepG2EIF4A3
SCAMP1ENSG00000085365.131298.780901581.48820-0.284103.003902.38160HepG2ETF1
SCAMP1ENSG00000085365.13729.148701051.88270-0.528703.859902.96330HepG2FIP1L1
SCAMP1ENSG00000085365.13793.31620615.737000.365502.518701.30630HepG2FKBP4
SCAMP1ENSG00000085365.131150.115501797.43520-0.644207.095506.02460HepG2FXR1
SCAMP1ENSG00000085365.131126.642101667.55920-0.565705.098404.20710HepG2G3BP1
SCAMP1ENSG00000085365.131217.283901770.09980-0.540205.319404.07280HepG2G3BP2
SCAMP1ENSG00000085365.13449.99050678.08220-0.591604.746503.57200HepG2GEMIN5
SCAMP1ENSG00000085365.13571.11660931.07420-0.705104.305903.51800HepG2GPKOW
SCAMP1ENSG00000085365.13478.90920878.02120-0.874509.148208.07320HepG2HNRNPA1
SCAMP1ENSG00000085365.13651.06790976.64830-0.585005.702404.73440HepG2HNRNPC
SCAMP1ENSG00000085365.131122.008001688.14730-0.589406.624505.57760HepG2HNRNPK
SCAMP1ENSG00000085365.131112.103001695.09960-0.608106.220005.24490HepG2IGF2BP2
SCAMP1ENSG00000085365.13814.99770991.01540-0.282103.309902.51420HepG2ILF2
SCAMP1ENSG00000085365.131010.485801600.72280-0.663702.423301.64940HepG2LARP4
SCAMP1ENSG00000085365.13874.469701798.06120-1.0400016.0339014.51810HepG2MAGOH
SCAMP1ENSG00000085365.131175.785601808.17870-0.620905.785604.89900HepG2MATR3
SCAMP1ENSG00000085365.131268.873201850.81530-0.544604.925204.09270HepG2NCBP2
SCAMP1ENSG00000085365.131017.650701321.94250-0.377402.607001.86740HepG2NOL12
SCAMP1ENSG00000085365.13443.52020679.05750-0.614502.322901.33030HepG2NONO
SCAMP1ENSG00000085365.131212.33750787.799200.621802.558901.83830HepG2NSUN2
SCAMP1ENSG00000085365.13336.22620569.38630-0.760004.204302.24430HepG2PA2G4
SCAMP1ENSG00000085365.131172.606901648.47330-0.491404.187703.31070HepG2PABPC4
SCAMP1ENSG00000085365.13915.429201564.26010-0.7730018.8967017.54210HepG2PCBP1
SCAMP1ENSG00000085365.13487.66870629.77980-0.368902.560201.38220HepG2PKM
SCAMP1ENSG00000085365.13572.60680865.33020-0.595707.730906.54880HepG2PPIL4
SCAMP1ENSG00000085365.131210.185301591.68610-0.395305.998905.25590HepG2PTBP1
SCAMP1ENSG00000085365.13661.405801261.82390-0.9319012.4147011.27200HepG2PUF60
SCAMP1ENSG00000085365.131125.033001339.38110-0.251602.230301.68570HepG2PUM1
SCAMP1ENSG00000085365.13735.64920952.42590-0.372602.648702.04210HepG2PUS1
SCAMP1ENSG00000085365.13577.898301068.12360-0.886205.844304.84550HepG2RAVER1
SCAMP1ENSG00000085365.131802.541601321.847900.447406.624205.90550HepG2RBM22
SCAMP1ENSG00000085365.13503.39860941.70050-0.903605.166403.71060HepG2RCC2
SCAMP1ENSG00000085365.131184.449901771.39970-0.5807011.3524010.39900HepG2NELFE
SCAMP1ENSG00000085365.131337.197801649.80740-0.303103.731203.03010HepG2RECQL
SCAMP1ENSG00000085365.13675.87880881.62260-0.383402.077901.47600HepG2RPLP0
SCAMP1ENSG00000085365.13735.704001048.90740-0.511702.814301.86260HepG2RPS10
SCAMP1ENSG00000085365.13512.03160740.98410-0.533204.709803.93100HepG2RPS19
SCAMP1ENSG00000085365.13694.000601069.62030-0.624103.037302.19900HepG2RPS2
SCAMP1ENSG00000085365.131014.783301407.34830-0.471802.935802.11270HepG2RPS3A
SCAMP1ENSG00000085365.13854.82170564.677100.598104.856703.84740HepG2RRP9
SCAMP1ENSG00000085365.13607.746701136.82980-0.903508.168806.96410HepG2SF3A3
SCAMP1ENSG00000085365.131261.457001657.16330-0.393605.803505.00030HepG2SF3B4
SCAMP1ENSG00000085365.13781.083501007.54680-0.367304.865804.05190HepG2SMN1
SCAMP1ENSG00000085365.131769.08460978.602100.854104.001203.05260HepG2SNRNP70
SCAMP1ENSG00000085365.131103.754601729.71460-0.6481014.8298013.92090HepG2SRSF1
SCAMP1ENSG00000085365.131731.267101407.210500.298903.976903.33870HepG2SRSF9
SCAMP1ENSG00000085365.13650.524601296.33490-0.9948024.8167023.62230HepG2SSB
SCAMP1ENSG00000085365.131532.89110998.140000.618804.152702.66490HepG2SUB1
SCAMP1ENSG00000085365.13274.33150942.67610-1.7808046.4843044.89600HepG2TIAL1
SCAMP1ENSG00000085365.13663.21030951.15150-0.520207.364906.52100HepG2TRIM56
SCAMP1ENSG00000085365.13508.16180899.89830-0.824508.999607.85970HepG2U2AF1
SCAMP1ENSG00000085365.13731.481101008.19830-0.462905.502204.56920HepG2UPF1
SCAMP1ENSG00000085365.13663.59370973.36960-0.552707.190106.30050HepG2UTP3
SCAMP1ENSG00000085365.131647.611901050.040600.649804.761203.09160HepG2XRCC5
SCAMP1ENSG00000085365.13264.38850724.92370-1.4552019.0380017.20560HepG2XRN2
SCAMP1ENSG00000085365.13835.161801108.81940-0.408902.892602.33620HepG2ZNF622
SCAMP1ENSG00000085365.131566.282901066.838600.553903.901102.33710HepG2ZRANB2
SCAMP1ENSG00000085365.13661.496301011.00480-0.612005.978805.17250K562AQR
SCAMP1ENSG00000085365.13915.386701098.08530-0.262502.257401.65970K562DDX47
SCAMP1ENSG00000085365.13331.02260541.07460-0.708902.710901.80760K562EFTUD2
SCAMP1ENSG00000085365.13599.06900795.34250-0.408904.195702.68180K562EIF2S1
SCAMP1ENSG00000085365.13494.47940668.18950-0.434302.743002.02700K562EIF2S2
SCAMP1ENSG00000085365.13356.68030579.50980-0.700202.300401.36690K562EIF3D
SCAMP1ENSG00000085365.13391.66450651.51010-0.734208.595707.19790K562EIF3G
SCAMP1ENSG00000085365.13446.01280756.49120-0.762208.610307.16210K562EIF4A3
SCAMP1ENSG00000085365.13534.50730681.25930-0.350002.703101.56950K562EIF4B
SCAMP1ENSG00000085365.131081.722301318.74450-0.285802.592701.68040K562EIF4G2
SCAMP1ENSG00000085365.13298.69650640.68020-1.1009013.8037011.75130K562FIP1L1
SCAMP1ENSG00000085365.13549.06020786.71870-0.518905.698404.87490K562FXR1
SCAMP1ENSG00000085365.131147.98370822.102300.481603.049702.30100K562G3BP2
SCAMP1ENSG00000085365.13364.22300570.96990-0.648603.140902.29770K562GPKOW
SCAMP1ENSG00000085365.13554.02160890.54150-0.684704.688603.70600K562GRSF1
SCAMP1ENSG00000085365.13278.98830592.02060-1.085407.375206.44680K562HNRNPC
SCAMP1ENSG00000085365.13372.86420528.52900-0.503302.610901.50480K562HNRNPF
SCAMP1ENSG00000085365.13771.77670992.43530-0.362802.888501.80600K562HNRNPL
SCAMP1ENSG00000085365.13763.22070997.93110-0.386803.285402.36260K562MAGOH
SCAMP1ENSG00000085365.13365.27920557.31950-0.609504.200603.10700K562METAP2
SCAMP1ENSG00000085365.13688.102101405.66510-1.0306017.0124014.46550K562MSI2
SCAMP1ENSG00000085365.13546.06310747.20250-0.452404.842203.79520K562MTPAP
SCAMP1ENSG00000085365.13673.27850887.96390-0.399303.026502.00580K562PCBP2
SCAMP1ENSG00000085365.13360.92360577.88350-0.679103.356201.76350K562PHF6
SCAMP1ENSG00000085365.13527.15430727.30820-0.464303.394002.47000K562PPIG
SCAMP1ENSG00000085365.13330.50400526.52320-0.671802.447201.74050K562PRPF8
SCAMP1ENSG00000085365.13303.49990530.76780-0.806403.726602.65600K562PSIP1
SCAMP1ENSG00000085365.13677.58860969.53110-0.516905.579904.66600K562PTBP1
SCAMP1ENSG00000085365.13988.119801438.86160-0.542205.469104.32410K562PUF60
SCAMP1ENSG00000085365.13592.31980929.82120-0.650607.049905.63600K562RBM22
SCAMP1ENSG00000085365.13308.26310458.89720-0.574002.235201.33450K562SRFBP1
SCAMP1ENSG00000085365.13731.45270950.43160-0.377803.012602.27730K562SRSF1
SCAMP1ENSG00000085365.13468.96620619.57570-0.401802.556601.55160K562SRSF4
SCAMP1ENSG00000085365.13536.61460961.96810-0.8421010.333108.82660K562TARDBP
SCAMP1ENSG00000085365.13667.53620927.90870-0.475104.592703.49750K562TIA1
SCAMP1ENSG00000085365.13290.26850510.53360-0.814604.924703.64380K562TIAL1
SCAMP1ENSG00000085365.13416.40520809.33870-0.958809.917607.80030K562UTP3
SCAMP1ENSG00000085365.13611.79990783.27210-0.356503.571402.61700K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCAMP1 is not available on ENCORE database.





6 RBPs can affect the splicing of SCAMP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESCAMP1ENSG00000085365.13chr5+777550677775518577712426777124737777132677772652-0.081000.001810.02775excludedK562PUS1
SESCAMP1ENSG00000085365.13chr5+7774575677745857777176247771778477755067777551850.260000.000250.03604includedHepG2PCBP2
SESCAMP1ENSG00000085365.13chr5+776846607768473877656434776565527771134377711442-0.075000.000240.04068excludedK562HNRNPM
SESCAMP1ENSG00000085365.13chr5+777457567774585777717624777177847775506777755185-0.237000.000780.05554excludedHepG2HNRNPL
SESCAMP1ENSG00000085365.13chr5+776846607768473877656434776565527771134377711442-0.071000.000390.02195excludedHepG2SF3B4
SESCAMP1ENSG00000085365.13chr5+777457567774585777717624777177847775506777755185-0.239000.000930.04389excludedHepG2SF3B4
SESCAMP1ENSG00000085365.13chr5+7774575677745857777176247771778477755067777551850.234000.000650.03052includedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCAMP1 is not avaliable on ENCORE database.