RNF128

General Information

Gene Name       : RNF128
Gene ID             : ENSG00000133135.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNF128)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF128ENSG00000133135.130.000.000.00ENCSR000AEF
HepG2RNF128ENSG00000133135.1313.4519.9116.68ENCSR985KAT
K562RNF128ENSG00000133135.130.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF128 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF128 RNA is bound by 16 proteins.  







eCLIP assay for RNF128 is not avaliable on ENCORE database.





16 proteins are bound to RNF128 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX106039496106039556+3'-UTR5.128708.85565HepG2TIAL1
chrX106040092106040195+3'-UTR4.469537.07555HepG2FUBP3
chrX106039307106039414+3'-UTR3.116327.19773HepG2TIAL1
chrX106039496106039557+3'-UTR3.127283.18141HepG2FUBP3
chrX106039307106039372+3'-UTR3.205345.24860HepG2FUBP3
chrX106039342106039425+3'-UTR3.874425.95143HepG2LIN28B
chrX105970053105970071+5'-UTR,intron-Distal4.542506.75419HepG2DDX3X
chrX105970051105970178+5'-UTR,CDS,intron-Distal5.0031621.57456HepG2RPS3
chrX105969949105970037+5'-UTR,intron-Distal4.2832113.85072HepG2DDX3X
chrX105970100105970190+5'-UTR,CDS,intron-Distal3.8102813.93821HepG2DDX3X
chrX105970308105970432+CDS,intron-Distal4.8450511.56026HepG2RPS3
chrX105970191105970289+CDS,intron-Distal4.0838020.86601HepG2DDX3X
chrX105970209105970288+CDS,intron-Distal5.7791912.21524HepG2RPS3
chrX106034317106034462+CDS5.160258.86021HepG2GRWD1
chrX106038836106038929+CDS3.985925.07650HepG2ZNF800
chrX106034360106034457+CDS3.583703.77917HepG2SND1
chrX105970355105970439+CDS,intron-Distal3.206263.68108HepG2SND1
chrX105970448105970552+CDS,intron-Distal3.489768.64022HepG2SND1
chrX105975292105975398+intron-Distal3.432469.95932HepG2PTBP1
chrX106012243106012320+intron-Distal4.120983.96879HepG2MATR3
chrX106013878106013947+intron-Distal4.465013.96879HepG2MATR3
chrX106014901106014991+intron-Distal3.426513.84025HepG2SUGP2
chrX105998551105998600+intron-Distal4.262543.26547HepG2HLTF
chrX106017669106017760+intron-Distal4.546304.07628HepG2PTBP1
chrX105979777105979887+intron-Distal4.257803.55640HepG2QKI
chrX105994604105994666+intron-Distal3.014093.75693HepG2HLTF
chrX105997464105997525+intron-Distal3.639387.16053HepG2HLTF
chrX105975014105975092+intron-Distal3.182495.03870HepG2HNRNPL
chrX105975299105975421+intron-Distal4.8109614.71135HepG2QKI
chrX105978289105978345+intron-Distal4.449204.40847HepG2PTBP1
chrX105982330105982406+intron-Distal4.1695513.74380HepG2PTBP1
chrX106027243106027333+intron-Distal3.411133.27276HepG2HNRNPL
chrX105983653105983720+intron-Distal3.599025.37374HepG2XPO5
chrX106003362106003440+intron-Distal3.595573.41489HepG2CSTF2
chrX105981587105981655+intron-Distal3.822323.16986HepG2QKI
chrX106012240106012330+intron-Distal4.313223.04224HepG2SUGP2
chrX105975312105975363+intron-Distal3.192975.39379HepG2HNRNPL
chrX105994437105994476+intron-Distal3.179783.08145HepG2HLTF
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF128 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF128 is not available on ENCORE database.

  • 114 RBPs can affect the levels of RNF128.  








The Knockdown/knockout RNA-Seq assay for RNF128 is not available on ENCORE database.





114 RBPs can affect the gene expression of RNF128 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF128ENSG00000133135.91302.990402165.30030-0.732708.458506.94130HepG2ABCF1
RNF128ENSG00000133135.93196.662002110.964400.5986018.8492017.56620HepG2ACO1
RNF128ENSG00000133135.91067.206501414.79170-0.406802.840101.83160HepG2ADAR
RNF128ENSG00000133135.92997.743302218.162300.434405.773804.84380HepG2AUH
RNF128ENSG00000133135.92654.342301175.922101.1745019.4917017.45900HepG2BCLAF1
RNF128ENSG00000133135.92589.016401746.853200.567507.555906.62680HepG2BOP1
RNF128ENSG00000133135.92121.273901622.527100.386604.357702.82950HepG2BUD13
RNF128ENSG00000133135.94176.613201963.999801.088407.742306.54360HepG2CALR
RNF128ENSG00000133135.91597.655702110.57270-0.401708.350207.31640HepG2CKAP4
RNF128ENSG00000133135.91359.829401913.49790-0.492802.123301.45890HepG2CNOT7
RNF128ENSG00000133135.92296.499901603.713800.517905.887504.91780HepG2CPSF6
RNF128ENSG00000133135.92630.136801783.470000.560408.450806.62530HepG2CPSF7
RNF128ENSG00000133135.91897.847701450.864100.387405.248903.84700HepG2YBX3
RNF128ENSG00000133135.9416.29210836.09000-1.006104.035402.76320HepG2CSTF2
RNF128ENSG00000133135.94120.625202475.054500.7353022.6256021.15030HepG2CELF1
RNF128ENSG00000133135.91622.650702661.53570-0.7139027.1714025.29780HepG2DAZAP1
RNF128ENSG00000133135.91461.289801952.37050-0.418008.352407.03930HepG2DDX19B
RNF128ENSG00000133135.92068.363001452.863100.509508.819606.93830HepG2DDX1
RNF128ENSG00000133135.91364.134101685.49130-0.305202.474501.82930HepG2DDX21
RNF128ENSG00000133135.91128.969301465.37460-0.376303.595902.05680HepG2DDX52
RNF128ENSG00000133135.93209.862701330.222201.2707025.2155023.25510HepG2DDX55
RNF128ENSG00000133135.93065.892401888.807800.698702.527401.55760HepG2DDX5
RNF128ENSG00000133135.94093.634103272.333800.323002.103201.55820HepG2DDX6
RNF128ENSG00000133135.91843.988901374.041700.424304.334103.11790HepG2DHX30
RNF128ENSG00000133135.91362.752902019.63820-0.5676011.9734010.77060HepG2DKC1
RNF128ENSG00000133135.91115.748401424.60400-0.352504.060603.22150HepG2DNAJC21
RNF128ENSG00000133135.9999.513501748.39510-0.8067010.758009.09860HepG2EEF2
RNF128ENSG00000133135.92641.623401551.866200.767303.446302.20070HepG2AGO1
RNF128ENSG00000133135.94850.189003145.544800.624607.795706.83570HepG2EIF2S1
RNF128ENSG00000133135.91930.132301419.320300.443403.958202.88660HepG2EIF3D
RNF128ENSG00000133135.92334.859703476.08590-0.574105.583004.67550HepG2EIF4A3
RNF128ENSG00000133135.91915.224703384.66900-0.821508.401007.23560HepG2EIF4B
RNF128ENSG00000133135.93213.912602515.154100.353602.890002.05940HepG2EIF4G2
RNF128ENSG00000133135.93160.428802546.594700.311502.648902.05800HepG2ETF1
RNF128ENSG00000133135.91627.905201268.494000.359803.816102.42170HepG2FAM120A
RNF128ENSG00000133135.92157.721601606.073600.425904.693203.26170HepG2FASTKD2
RNF128ENSG00000133135.91135.364202186.49420-0.9455012.5007011.03600HepG2FIP1L1
RNF128ENSG00000133135.91713.447001107.351200.629706.505504.65200HepG2FKBP4
RNF128ENSG00000133135.92333.187501838.596900.343602.067501.38010HepG2FUBP3
RNF128ENSG00000133135.91678.801803507.56040-1.0630020.1741018.48510HepG2FXR1
RNF128ENSG00000133135.92181.586503253.60010-0.576705.989805.02760HepG2G3BP1
RNF128ENSG00000133135.9685.909901263.72530-0.8816011.612509.85050HepG2GEMIN5
RNF128ENSG00000133135.92315.353301817.954800.348802.144001.57670HepG2GPKOW
RNF128ENSG00000133135.92355.909202015.407400.225102.747801.77450HepG2HDGF
RNF128ENSG00000133135.9894.333501438.25270-0.685409.148408.07320HepG2HNRNPA1
RNF128ENSG00000133135.93733.438402445.909600.6100016.8388014.92280HepG2HNRNPA2B1
RNF128ENSG00000133135.91203.413001599.80750-0.410803.797802.99640HepG2HNRNPC
RNF128ENSG00000133135.91968.947202424.52950-0.300305.748204.80750HepG2HNRNPL
RNF128ENSG00000133135.93959.448401734.905901.190305.073104.24690HepG2HNRNPLL
RNF128ENSG00000133135.9928.970901589.22920-0.7746020.0173018.49970HepG2HNRNPU
RNF128ENSG00000133135.91527.898703307.15070-1.1140022.0374020.34840HepG2IGF2BP2
RNF128ENSG00000133135.9986.000901623.34210-0.7193021.4080019.58780HepG2ILF2
RNF128ENSG00000133135.91297.566201821.87200-0.489602.549301.41690HepG2KHDRBS1
RNF128ENSG00000133135.92222.102103326.54580-0.582104.942203.56650HepG2KHSRP
RNF128ENSG00000133135.92423.996001929.727900.328906.440604.91600HepG2KIF1C
RNF128ENSG00000133135.91634.632202507.23760-0.617104.059502.53570HepG2KRR1
RNF128ENSG00000133135.91046.879103508.78640-1.7449047.6015045.14730HepG2MAGOH
RNF128ENSG00000133135.91545.173503528.37010-1.1912021.3675019.74380HepG2MATR3
RNF128ENSG00000133135.9992.888201769.87230-0.8339014.5378012.83980HepG2MSI2
RNF128ENSG00000133135.92190.293601486.104600.559507.735205.74020HepG2NAA15
RNF128ENSG00000133135.92331.061503611.43870-0.631607.316106.30960HepG2NCBP2
RNF128ENSG00000133135.91984.920801508.344000.396003.168301.65280HepG2NIP7
RNF128ENSG00000133135.9819.609602639.16020-1.6871066.1065062.92180HepG2NOL12
RNF128ENSG00000133135.93865.761701538.311201.3293036.4543034.25980HepG2NSUN2
RNF128ENSG00000133135.9771.915901573.04320-1.0270030.6210028.40170HepG2PARN
RNF128ENSG00000133135.91746.973103112.08790-0.8330030.0426028.40840HepG2PCBP1
RNF128ENSG00000133135.9909.822001173.74020-0.367503.516202.12780HepG2PKM
RNF128ENSG00000133135.91837.812501417.462500.374604.967304.00810HepG2PPIL4
RNF128ENSG00000133135.9629.826001017.87000-0.692505.757204.68380HepG2PRPF4
RNF128ENSG00000133135.91266.722102166.54900-0.774304.187302.70370HepG2PRPF6
RNF128ENSG00000133135.92128.930503166.70780-0.5729014.1436013.09510HepG2PTBP1
RNF128ENSG00000133135.92099.746402519.24150-0.262802.325501.77230HepG2PUF60
RNF128ENSG00000133135.91603.014902674.20660-0.7383030.6692029.12480HepG2PUM1
RNF128ENSG00000133135.91150.831502672.30270-1.2154039.9385037.66570HepG2PUM2
RNF128ENSG00000133135.91856.649803429.53330-0.8853025.8196024.18540HepG2QKI
RNF128ENSG00000133135.92864.564201989.136000.526102.164401.53490HepG2RAVER1
RNF128ENSG00000133135.91802.450102128.51370-0.239902.207101.73040HepG2RBM22
RNF128ENSG00000133135.94757.982003112.555700.6122011.3715010.06380HepG2RBM25
RNF128ENSG00000133135.91668.629803524.20690-1.0786048.0746046.46260HepG2NELFE
RNF128ENSG00000133135.91653.456103282.38300-0.9893041.6605039.83860HepG2RECQL
RNF128ENSG00000133135.91057.566801276.91240-0.271901.901801.32340HepG2RPLP0
RNF128ENSG00000133135.9742.537101381.05390-0.8952015.7806014.47900HepG2RPS19
RNF128ENSG00000133135.91159.616801855.08520-0.677803.978603.02790HepG2RPS2
RNF128ENSG00000133135.91270.328401893.47350-0.575802.678401.61970HepG2RPS5
RNF128ENSG00000133135.91722.947001415.268700.283703.912203.16890HepG2SAFB2
RNF128ENSG00000133135.91100.988501386.11420-0.332202.253301.40100HepG2SERBP1
RNF128ENSG00000133135.91512.403902508.85220-0.730206.394905.34550HepG2SF3A3
RNF128ENSG00000133135.92158.053403296.87630-0.6114017.2385015.95390HepG2SF3B4
RNF128ENSG00000133135.93731.764602415.396600.6275023.8402022.18620HepG2SLBP
RNF128ENSG00000133135.91108.813502025.96830-0.869606.378204.87690HepG2SMNDC1
RNF128ENSG00000133135.92641.734201910.710600.467302.714701.94030HepG2SNRNP70
RNF128ENSG00000133135.93781.137102404.134100.6532017.8638016.88400HepG2SRFBP1
RNF128ENSG00000133135.91619.995403441.25580-1.0869053.7780052.27730HepG2SRSF1
RNF128ENSG00000133135.92321.642002799.67140-0.270104.204403.55040HepG2SRSF9
RNF128ENSG00000133135.93424.012001858.783700.881208.628006.58550HepG2SUB1
RNF128ENSG00000133135.92173.181802828.81410-0.380408.723507.72300HepG2SUCLG1
RNF128ENSG00000133135.92529.274701476.654600.7763015.2501013.17460HepG2SUPT6H
RNF128ENSG00000133135.91615.575003093.22010-0.9371030.1266028.54050HepG2TAF15
RNF128ENSG00000133135.92221.311501690.942500.393503.742802.91610HepG2TARDBP
RNF128ENSG00000133135.91451.37540887.806100.709004.944203.66940HepG2TFIP11
RNF128ENSG00000133135.92237.366902842.15750-0.345203.785902.81530HepG2TIA1
RNF128ENSG00000133135.91025.698701544.16830-0.590208.944108.13710HepG2TIAL1
RNF128ENSG00000133135.92210.907701558.041700.5048010.996909.98420HepG2TRIM56
RNF128ENSG00000133135.9628.209801127.82430-0.844208.541606.04040HepG2TROVE2
RNF128ENSG00000133135.91485.443601870.55570-0.332602.319801.73950HepG2U2AF1
RNF128ENSG00000133135.9485.37660782.48460-0.689002.655601.91200HepG2UCHL5
RNF128ENSG00000133135.91263.589602148.11780-0.7655022.6825021.21360HepG2UTP3
RNF128ENSG00000133135.9763.382701303.71710-0.772202.787802.06070HepG2XRN2
RNF128ENSG00000133135.94940.184602447.038301.0134065.0187063.28710HepG2ZNF622
RNF128ENSG00000133135.90.9422014.43600-3.937503.145502.35430K562NSUN2
RNF128ENSG00000133135.90.0000013.32630-99999.999993.996801.56900K562NUFIP2
RNF128ENSG00000133135.90.0000014.25100-99999.999994.463503.44630K562SF3A3
RNF128ENSG00000133135.90.4457014.60100-5.033903.727402.66050K562SRPK2
RNF128ENSG00000133135.90.5008015.30720-4.933704.158803.29590K562UPF1
RNF128ENSG00000133135.90.0000013.09730-99999.999994.011502.95200K562WDR3
RNF128ENSG00000133135.90.0000013.62340-99999.999994.364103.32000K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF128 is not available on ENCORE database.





1 RBPs can affect the splicing of RNF128 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF128ENSG00000133135.9chrX+106033415106033512106031147106031230106034295106034464-0.077000.000000.00003excludedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF128 is not avaliable on ENCORE database.