PSMD8

General Information

Gene Name       : PSMD8
Gene ID             : ENSG00000099341.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PSMD8)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PSMD8ENSG00000099341.11116.37142.74129.56ENCSR000AEF
HepG2PSMD8ENSG00000099341.11181.99145.50163.75ENCSR985KAT
K562PSMD8ENSG00000099341.11272.17266.94269.56ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PSMD8 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PSMD8 RNA is bound by 25 proteins.  







eCLIP assay for PSMD8 is not avaliable on ENCORE database.





25 proteins are bound to PSMD8 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193887408638874132+3'-UTR7.63895400.00000K562PABPC4
chr193887279238872843+3'-UTR,CDS,intron-Distal3.399825.53232K562PUM1
chr193887275638872761+3'-UTR,CDS,intron-Distal,intron-Proximal3.326855.80107K562SND1
chr193887406438874086+3'-UTR7.50799400.00000K562PABPC4
chr193887401338874069+3'-UTR,CDS3.681465.85544K562LIN28B
chr193887392638873953+3'-UTR,CDS3.444388.09411K562IGF2BP2
chr193887398738874103+3'-UTR,CDS3.490499.82702HepG2LARP4
chr193887406038874112+3'-UTR4.081966.66061K562APOBEC3C
chr193887391538874022+3'-UTR,CDS3.3451411.17653K562ZNF800
chr193887428638874379+3'-UTR6.3208425.04760K562LIN28B
chr193887392538873964+3'-UTR,CDS4.366376.48440K562IGF2BP1
chr193887282438872846+3'-UTR,CDS,intron-Distal3.378025.80696K562IGF2BP1
chr193887389138873925+3'-UTR,CDS,intron-Proximal3.265093.60305K562IGF2BP1
chr193887437638874422+3'-UTR3.136673.06830K562UPF1
chr193887275638872762+3'-UTR,CDS,intron-Distal,intron-Proximal3.4745813.93957K562YBX3
chr193887279938872850+3'-UTR,CDS,intron-Distal4.1061416.93423K562IGF2BP2
chr193887284638872868+3'-UTR,CDS,intron-Distal3.150653.54195K562IGF2BP1
chr193887275638872792+3'-UTR,CDS,intron-Distal,intron-Proximal3.761054.03691K562PUM1
chr193887284738872871+3'-UTR,CDS,intron-Distal,intron-Proximal3.259589.12920K562UCHL5
chr193887403838874061+3'-UTR3.4311111.42779K562PABPC4
chr193887392138873981+3'-UTR,CDS3.020765.60602HepG2GRWD1
chr193887392038874052+3'-UTR,CDS3.173456.76286HepG2G3BP1
chr193886676538866820+5'-UTR,CDS,intron-Proximal3.762773.32861HepG2U2AF2
chr193886541738865465+5'-UTR,CDS4.641715.59726K562GEMIN5
chr193886692638866996+5'-UTR,CDS,intron-Distal,intron-Proximal4.109548.02891K562EFTUD2
chr193886540938865456+5'-UTR,CDS5.3606127.48782K562DDX3X
chr193886699438867083+5'-UTR,CDS,intron-Distal3.119224.18458HepG2G3BP1
chr193886561438865661+5'-UTR,intron-Proximal3.573683.54718K562PRPF8
chr193886709338867116+CDS,intron-Distal,intron-Proximal3.150674.38107K562AQR
chr193887397538873990+CDS3.6263411.81469K562YBX3
chr193886549238865550+CDS4.1651349.86433K562DDX3X
chr193886543938865526+CDS4.0844416.46281K562RPS3
chr193886994338870030+CDS,intron-Distal3.869235.36496K562ZNF800
chr193887157938871609+CDS,intron-Distal3.7428215.37040K562YBX3
chr193886708338867135+CDS,intron-Distal,intron-Proximal4.659257.79098HepG2PRPF8
chr193887004338870092+CDS,intron-Distal,intron-Proximal4.2616913.09382K562AQR
chr193887395338873975+CDS3.2284611.37641K562YBX3
chr193886558438865635+CDS,intron-Proximal3.880855.90868HepG2PRPF8
chr193887286838872938+CDS,intron-Distal,intron-Proximal3.462667.70675K562AQR
chr193887149338871557+CDS,intron-Distal,intron-Proximal3.607428.77060K562AQR
chr193887162738871639+CDS,intron-Distal3.4692317.81944K562YBX3
chr193887395338873993+CDS3.292549.30256K562IGF2BP2
chr193886549438865537+CDS5.103994.38825K562DROSHA
chr193886688038866983+CDS,intron-Proximal4.958767.09786HepG2AQR
chr193886989638869976+CDS,intron-Distal3.555768.43476K562RPS3
chr193887155238871579+CDS,intron-Distal3.5013018.77181K562YBX3
chr193887000038870045+CDS,intron-Distal4.374693.01429K562IGF2BP1
chr193887160938871627+CDS,intron-Distal3.9554220.40248K562YBX3
chr193887399038874017+CDS3.2032811.97741K562YBX3
chr193887162838871677+CDS,intron-Distal,intron-Proximal4.052196.81564HepG2PRPF8
chr193887286838872924+CDS,intron-Distal,intron-Proximal4.332206.23016HepG2PRPF8
chr193887162638871640+CDS,intron-Distal,intron-Proximal3.842087.10086K562SND1
chr193887160238871626+CDS,intron-Distal3.528757.22720K562SND1
chr193886545638865492+CDS4.7616239.10931K562DDX3X
chr193887010838870145+intron-Distal,intron-Proximal4.401644.49756K562BUD13
chr193886980638869878+intron-Distal,intron-Proximal3.680395.47851K562SF3B4
chr193886716438867253+intron-Distal,intron-Proximal5.160707.58908K562PRPF8
chr193886711638867134+intron-Distal,intron-Proximal4.734824.86944K562AQR
chr193886727938867400+intron-Distal3.174383.63710K562HNRNPK
chr193887009238870168+intron-Distal,intron-Proximal4.3108310.30697K562AQR
chr193887165038871689+intron-Distal,intron-Proximal4.618604.48002K562AQR
chr193886560238865641+intron-Proximal4.831153.62536K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PSMD8 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PSMD8 is not available on ENCORE database.

  • 86 RBPs can affect the levels of PSMD8.  








The Knockdown/knockout RNA-Seq assay for PSMD8 is not available on ENCORE database.





86 RBPs can affect the gene expression of PSMD8 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PSMD8ENSG00000099341.7807.424301086.87610-0.428803.597702.38220HepG2AATF
PSMD8ENSG00000099341.71699.509801466.051100.213102.346201.77880HepG2ACO1
PSMD8ENSG00000099341.72827.834801974.290500.518304.402903.75290HepG2AKAP1
PSMD8ENSG00000099341.72427.931702130.881600.188202.005901.40460HepG2AUH
PSMD8ENSG00000099341.72004.341701551.957100.368902.892102.10140HepG2CIRBP
PSMD8ENSG00000099341.72115.162001719.916100.298302.598301.52650HepG2CPSF7
PSMD8ENSG00000099341.72228.722001828.708000.285303.621102.90570HepG2CELF1
PSMD8ENSG00000099341.7872.677101173.41130-0.427204.143003.01460HepG2DDX24
PSMD8ENSG00000099341.72630.411801891.094000.476004.345103.57590HepG2DDX3X
PSMD8ENSG00000099341.71434.302001997.71140-0.478002.211201.34100HepG2DDX59
PSMD8ENSG00000099341.72228.906101624.787900.456003.519902.83070HepG2DDX6
PSMD8ENSG00000099341.71407.915101111.784500.340603.858803.03970HepG2DNAJC21
PSMD8ENSG00000099341.71504.019501153.007800.383302.760801.84200HepG2EEF2
PSMD8ENSG00000099341.7898.800701132.26840-0.333102.768801.68660HepG2EIF3G
PSMD8ENSG00000099341.72267.025301725.664600.393502.690202.06010HepG2EIF4A3
PSMD8ENSG00000099341.71977.905202446.60380-0.306804.971104.20770HepG2ETF1
PSMD8ENSG00000099341.71786.265501432.501700.318302.873602.02330HepG2EWSR1
PSMD8ENSG00000099341.71073.54180833.258800.365402.407201.57740HepG2GEMIN5
PSMD8ENSG00000099341.71269.181601994.08650-0.651806.902605.92050HepG2GPKOW
PSMD8ENSG00000099341.71557.780901248.516800.319202.502801.84040HepG2HNRNPC
PSMD8ENSG00000099341.71922.946602191.28260-0.188501.963501.35200HepG2HNRNPF
PSMD8ENSG00000099341.72061.194201791.084400.202502.554301.90510HepG2HNRNPL
PSMD8ENSG00000099341.71539.459501266.883400.281004.255703.36520HepG2ILF2
PSMD8ENSG00000099341.71401.398101742.16760-0.314002.009301.44630HepG2MAGOH
PSMD8ENSG00000099341.71413.257201941.03840-0.457802.636301.69290HepG2MTPAP
PSMD8ENSG00000099341.71657.284301949.73220-0.234502.072901.41000HepG2NOL12
PSMD8ENSG00000099341.71069.696201687.44990-0.657608.071406.84170HepG2NSUN2
PSMD8ENSG00000099341.71255.581601596.56950-0.346602.364901.69280HepG2PABPC4
PSMD8ENSG00000099341.71304.141201106.211500.237402.040701.39930HepG2PPIL4
PSMD8ENSG00000099341.71319.816601698.04150-0.363505.067404.05400HepG2PRPF4
PSMD8ENSG00000099341.71227.951601732.31220-0.496408.936208.06650HepG2PTBP1
PSMD8ENSG00000099341.71513.987001876.17380-0.309403.313802.63870HepG2QKI
PSMD8ENSG00000099341.71587.771901102.382600.526302.646701.95700HepG2RAVER1
PSMD8ENSG00000099341.71343.480301702.73430-0.341903.240302.51630HepG2RBM25
PSMD8ENSG00000099341.71362.898001927.91150-0.500409.222208.33760HepG2NELFE
PSMD8ENSG00000099341.71288.888701795.56150-0.478308.558907.56390HepG2RECQL
PSMD8ENSG00000099341.71232.47810910.758900.436304.198003.45550HepG2RPS19
PSMD8ENSG00000099341.71471.925001104.499200.414206.849705.90380HepG2SAFB2
PSMD8ENSG00000099341.71173.05900913.932700.360002.475801.58540HepG2SERBP1
PSMD8ENSG00000099341.73470.440701979.543900.809908.725507.47290HepG2SF3A3
PSMD8ENSG00000099341.71333.699901803.59160-0.435407.232206.34880HepG2SF3B4
PSMD8ENSG00000099341.71629.783201288.018800.339405.763804.88950HepG2SMN1
PSMD8ENSG00000099341.71241.025301531.54090-0.303503.980503.34220HepG2SRSF9
PSMD8ENSG00000099341.71187.743601692.07100-0.510607.970507.09820HepG2TAF15
PSMD8ENSG00000099341.71243.803601554.82010-0.322003.055502.18190HepG2TIA1
PSMD8ENSG00000099341.71777.644501205.092900.560708.705907.90860HepG2TIAL1
PSMD8ENSG00000099341.71731.055101215.922100.509505.160104.43870HepG2TRIM56
PSMD8ENSG00000099341.72714.904101694.916600.6796021.1259019.70190HepG2UTP3
PSMD8ENSG00000099341.73846.004701930.771700.9941061.3712059.67660HepG2ZNF622
PSMD8ENSG00000099341.77439.721405261.456900.4997015.7575014.51740K562AGGF1
PSMD8ENSG00000099341.77953.910105781.549600.460106.276104.65180K562AKAP8
PSMD8ENSG00000099341.77414.315605474.785400.437405.485304.54850K562AKAP8L
PSMD8ENSG00000099341.74043.754405361.22740-0.406904.320003.61800K562AQR
PSMD8ENSG00000099341.73417.060304278.19680-0.324203.841002.91760K562CPSF6
PSMD8ENSG00000099341.73122.859702547.281900.293803.730102.14700K562DDX6
PSMD8ENSG00000099341.77316.236305891.255300.312405.301104.03550K562DKC1
PSMD8ENSG00000099341.72597.863101768.585400.5546010.858609.27280K562EIF3G
PSMD8ENSG00000099341.72797.492602363.796400.242902.506501.42650K562EIF4B
PSMD8ENSG00000099341.73497.524504817.61940-0.462003.544601.66050K562ESF1
PSMD8ENSG00000099341.73073.723502291.215400.423806.576604.39840K562EWSR1
PSMD8ENSG00000099341.76139.641304530.728800.438305.330204.12680K562FIP1L1
PSMD8ENSG00000099341.73572.969604353.06480-0.284902.416201.61480K562FMR1
PSMD8ENSG00000099341.72865.391503689.65890-0.364803.012002.05450K562FTO
PSMD8ENSG00000099341.73350.028402729.743100.295304.144403.42590K562FXR1
PSMD8ENSG00000099341.7907.100501893.81910-1.062006.591705.39590K562G3BP2
PSMD8ENSG00000099341.73825.677404630.94980-0.275602.792801.71600K562HNRNPA1
PSMD8ENSG00000099341.72543.211703675.00010-0.531108.405907.41520K562HNRNPC
PSMD8ENSG00000099341.75227.780603726.723400.488204.820903.55410K562HNRNPM
PSMD8ENSG00000099341.73701.798102613.515300.502104.371002.95830K562IGF2BP2
PSMD8ENSG00000099341.73342.440902657.681300.330602.665701.50250K562IGF2BP3
PSMD8ENSG00000099341.76847.189505810.112300.236802.410701.64860K562KIF1C
PSMD8ENSG00000099341.72723.638803487.83420-0.356802.211101.38750K562KRR1
PSMD8ENSG00000099341.77104.698805561.709800.353104.121302.73070K562MAK16
PSMD8ENSG00000099341.78013.849606508.793800.300003.260502.25910K562MBNL1
PSMD8ENSG00000099341.74197.285505118.75770-0.286305.588804.46360K562MTPAP
PSMD8ENSG00000099341.75826.910204562.193400.352902.273801.49340K562NAA15
PSMD8ENSG00000099341.74892.855305687.46030-0.217105.431204.43750K562NSUN2
PSMD8ENSG00000099341.76725.538203555.753300.919405.557804.01900K562PABPN1
PSMD8ENSG00000099341.74626.333305750.24110-0.313802.405001.63060K562PCBP3
PSMD8ENSG00000099341.73774.942104410.50130-0.224502.137301.43350K562POLR2G
PSMD8ENSG00000099341.77006.421505143.467100.445805.328504.12920K562PPIG
PSMD8ENSG00000099341.73831.670602667.222400.522508.455207.33470K562PTBP1
PSMD8ENSG00000099341.78771.780405429.478600.6920012.3230011.22390K562PUS1
PSMD8ENSG00000099341.76834.412805290.214100.369406.430005.55200K562RBM15
PSMD8ENSG00000099341.75529.714103251.091600.766203.106601.80820K562SF1
PSMD8ENSG00000099341.74904.695505611.98140-0.194302.467901.69480K562SF3A3
PSMD8ENSG00000099341.73033.529503884.73580-0.356802.697701.73500K562SF3B1
PSMD8ENSG00000099341.75778.696503734.823900.629602.462901.33200K562SNRNP200
PSMD8ENSG00000099341.74837.335305749.58800-0.249205.320104.07200K562SRPK2
PSMD8ENSG00000099341.73161.827802614.938800.273902.444001.77240K562SRSF1
PSMD8ENSG00000099341.74745.812705944.40550-0.324902.954601.54410K562SSRP1
PSMD8ENSG00000099341.73340.796002646.119000.336202.373301.71580K562TARDBP
PSMD8ENSG00000099341.73215.582602552.577700.333002.746001.93200K562TIA1
PSMD8ENSG00000099341.73058.616602505.712900.287602.288401.31600K562TRA2A
PSMD8ENSG00000099341.74403.287505160.14190-0.228802.102101.34030K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PSMD8 is not available on ENCORE database.





1 RBPs can affect the splicing of PSMD8 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RIPSMD8ENSG00000099341.7chr19+3886679938867094388667993886687238866991388670940.059000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PSMD8 is not avaliable on ENCORE database.