PPDPF

General Information

Gene Name       : PPDPF
Gene ID             : ENSG00000125534.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PPDPF)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PPDPFENSG00000125534.90.093.541.81ENCSR000AEF
HepG2PPDPFENSG00000125534.916.341.989.16ENCSR985KAT
K562PPDPFENSG00000125534.942.697.5025.09ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PPDPF is not avaliable on ENCORE database.



Proteins bound to RNA
  • PPDPF RNA is bound by 20 proteins.  







eCLIP assay for PPDPF is not avaliable on ENCORE database.





20 proteins are bound to PPDPF RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr206215346862153478+3'-UTR3.741699.14834K562PABPC4
chr206215341862153477+3'-UTR4.4920939.22828K562IGF2BP2
chr206215334962153400+3'-UTR3.9612345.48275K562ILF3
chr206215341362153461+3'-UTR3.372216.30183HepG2DDX59
chr206215335162153396+3'-UTR4.0040552.71931K562PABPC4
chr206215339662153448+3'-UTR3.7858452.49647K562PABPC4
chr206215340062153418+3'-UTR3.8913021.68839K562IGF2BP2
chr206215345662153503+3'-UTR3.687818.80014K562IGF2BP1
chr206215335562153400+3'-UTR4.6791218.93204K562IGF2BP2
chr206215325962153376+3'-UTR4.798836.14899HepG2PCBP2
chr206215345862153466+3'-UTR3.7355923.57164K562YBX3
chr206215340062153411+3'-UTR3.5175612.25652K562ILF3
chr206215341662153418+3'-UTR3.3755719.90591K562YBX3
chr206215322362153288+3'-UTR,CDS3.5913833.37893K562PCBP1
chr206215341162153453+3'-UTR3.3062214.20175K562ILF3
chr206215347162153477+3'-UTR3.115793.34231K562RBM15
chr206215334862153398+3'-UTR3.7628021.75303K562HNRNPK
chr206215215262152210+5'-UTR4.3975511.64549K562SERBP1
chr206215265362152699+5'-UTR,CDS,intron-Distal4.6916026.44987K562METAP2
chr206215221262152224+5'-UTR3.81319400.00000K562YBX3
chr206215223062152247+5'-UTR4.1460047.52044K562METAP2
chr206215220562152230+5'-UTR4.0044957.88599K562METAP2
chr206215220962152247+5'-UTR3.0904719.90784K562DDX3X
chr206215216362152203+5'-UTR3.0860021.69297K562METAP2
chr206215215662152245+5'-UTR4.3539672.20324K562DROSHA
chr206215212762152157+5'-UTR3.478738.38307K562DDX3X
chr206215224162152246+5'-UTR3.6799040.32646K562YBX3
chr206215219062152206+5'-UTR3.0562348.32486K562YBX3
chr206215263662152643+5'-UTR,intron-Distal,intron-Proximal3.7319320.34669K562METAP2
chr206215214762152215+5'-UTR3.2643429.97658K562HNRNPK
chr206215265262152667+5'-UTR,CDS,intron-Distal4.7465572.91862K562YBX3
chr206215265962152700+5'-UTR,CDS,intron-Distal3.063068.34939HepG2SUB1
chr206215220662152212+5'-UTR3.68127400.00000K562YBX3
chr206215264062152643+5'-UTR,intron-Distal3.4213829.50622K562YBX3
chr206215222462152235+5'-UTR4.14069400.00000K562YBX3
chr206215223562152241+5'-UTR4.33744400.00000K562YBX3
chr206215214462152162+5'-UTR4.3181710.21632K562IGF2BP2
chr206215264362152652+5'-UTR,intron-Distal3.9665337.47039K562YBX3
chr206215214062152239+5'-UTR4.04108400.00000K562PCBP1
chr206215212662152144+5'-UTR5.1458010.62438K562IGF2BP2
chr206215216462152247+5'-UTR3.4951611.53480HepG2DDX59
chr206215213162152247+5'-UTR3.845833.68253HepG2DDX3X
chr206215215762152209+5'-UTR3.3413625.36900K562DDX3X
chr206215263662152643+5'-UTR,intron-Distal,intron-Proximal3.081807.82552K562PABPC4
chr206215307762153128+CDS3.5246419.29326K562METAP2
chr206215286962152876+CDS3.6193226.40477K562YBX3
chr206215314762153151+CDS4.0978326.01690K562YBX3
chr206215286462152869+CDS,intron-Proximal4.1728732.29048K562YBX3
chr206215266762152684+CDS,intron-Distal4.6535387.29326K562YBX3
chr206215286662152920+CDS3.0930316.07565K562METAP2
chr206215315162153171+CDS4.1061435.83404K562YBX3
chr206215305762153069+CDS3.4976863.11403K562YBX3
chr206215292262152941+CDS5.5217424.24888K562PCBP1
chr206215271362152716+CDS,intron-Distal3.5665226.08813K562YBX3
chr206215266262152698+CDS,intron-Distal3.387699.81562K562PABPC4
chr206215305862153106+CDS3.485564.08867HepG2LARP4
chr206215268462152698+CDS,intron-Distal4.5471665.12215K562YBX3
chr206215308862153105+CDS3.3031674.20707K562YBX3
chr206215296562153003+CDS,intron-Proximal3.891594.51666K562RBM15
chr206215304762153142+CDS3.495795.96724HepG2YBX3
chr206215306962153088+CDS3.6247282.72867K562YBX3
chr206215317662153180+CDS4.1052026.26705K562YBX3
chr206215304562153057+CDS3.0441927.86877K562YBX3
chr206215269862152702+CDS,intron-Distal4.0810141.34215K562YBX3
chr206215270262152705+CDS,intron-Distal3.8295525.58692K562YBX3
chr206215311762153132+CDS3.1068631.47905K562YBX3
chr206215297362153014+CDS,intron-Proximal3.3008312.41492K562SF3B4
chr206215277662152891+CDS,intron-Proximal4.0456641.80847K562SF3B4
chr206215270562152708+CDS,intron-Distal3.8063324.84421K562YBX3
chr206215290162152922+CDS5.2505032.36618K562PCBP1
chr206215270862152713+CDS,intron-Distal4.0524336.72981K562YBX3
chr206215235662152445+intron-Distal3.261406.32831K562PRPF8
chr206215235362152424+intron-Distal4.202925.22198HepG2EFTUD2
chr206215251062152516+intron-Distal3.858508.72457K562RBM15
chr206215245662152530+intron-Distal5.356635.96317HepG2EFTUD2
chr206215246262152479+intron-Distal3.884537.79680K562RBM15
chr206215258462152635+intron-Distal,intron-Proximal5.5329020.59421K562SF3B4
chr206215247962152510+intron-Distal3.534499.71424K562RBM15
chr206215238362152439+intron-Distal3.719648.28940K562BUD13
chr206215230362152418+intron-Distal,intron-Proximal4.3697918.99448K562EFTUD2
chr206215230362152375+intron-Distal,intron-Proximal3.487555.73990HepG2PRPF8
chr206215248162152493+intron-Distal3.699875.29272K562BUD13
chr206215245962152526+intron-Distal3.965827.64882K562PRPF8
chr206215228362152329+intron-Proximal5.121893.93931HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PPDPF is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PPDPF is not available on ENCORE database.

  • 98 RBPs can affect the levels of PPDPF.  








The Knockdown/knockout RNA-Seq assay for PPDPF is not available on ENCORE database.





98 RBPs can affect the gene expression of PPDPF :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PPDPFENSG00000125534.5367.57440267.442300.458702.997002.20260HepG2AKAP8L
PPDPFENSG00000125534.5187.3607077.157601.279802.398401.52720HepG2BCCIP
PPDPFENSG00000125534.540.85950143.99580-1.817306.508005.63580HepG2BOP1
PPDPFENSG00000125534.5161.92020266.13340-0.716905.119004.26570HepG2CKAP4
PPDPFENSG00000125534.5211.96320323.53970-0.610102.687701.40750HepG2DDX47
PPDPFENSG00000125534.5151.7814065.807601.205604.352902.69470HepG2DDX52
PPDPFENSG00000125534.5249.7483097.039701.363703.786103.07340HepG2DDX6
PPDPFENSG00000125534.5100.9383049.739001.020902.372701.71560HepG2DNAJC21
PPDPFENSG00000125534.5107.0961049.314501.118704.904104.07560HepG2DNAJC2
PPDPFENSG00000125534.5178.2589078.490101.183305.181303.95480HepG2EEF2
PPDPFENSG00000125534.5221.5707093.193701.249402.571602.00040HepG2EIF2S1
PPDPFENSG00000125534.5188.44920102.945000.872201.968701.42560HepG2EIF4A3
PPDPFENSG00000125534.544.0616098.81290-1.165204.011403.03620HepG2EIF4G1
PPDPFENSG00000125534.5131.2852056.963201.204504.259102.78000HepG2FAM120A
PPDPFENSG00000125534.585.57560175.76470-1.038405.111004.05390HepG2FUBP3
PPDPFENSG00000125534.5253.57280104.003201.285703.594202.81230HepG2FXR1
PPDPFENSG00000125534.5127.0438050.215701.339005.663704.78240HepG2HNRNPA1
PPDPFENSG00000125534.598.3757055.490900.826002.790502.18020HepG2HNRNPU
PPDPFENSG00000125534.5112.3310056.681200.986703.404602.59710HepG2ILF2
PPDPFENSG00000125534.5277.87760104.040101.4172010.574909.31990HepG2MAGOH
PPDPFENSG00000125534.5224.61640104.600301.102502.859802.21900HepG2MATR3
PPDPFENSG00000125534.5362.51810107.046201.7597013.1228011.80460HepG2NCBP2
PPDPFENSG00000125534.5110.4582029.773501.891303.196701.63960HepG2NOLC1
PPDPFENSG00000125534.5128.4982049.492601.376407.340106.18110HepG2PPIL4
PPDPFENSG00000125534.565.34040185.92240-1.508707.653206.44510HepG2PRPF4
PPDPFENSG00000125534.5174.9978095.045600.880504.006703.37510HepG2PTBP1
PPDPFENSG00000125534.5150.4607094.806600.666202.427701.86380HepG2PUF60
PPDPFENSG00000125534.5158.62920100.641700.656302.896902.29370HepG2PUM1
PPDPFENSG00000125534.5192.53320100.568000.936802.403301.77760HepG2PUM2
PPDPFENSG00000125534.5149.9658063.012601.250805.197103.81900HepG2RBM27
PPDPFENSG00000125534.5114.2401051.169301.158603.800002.55270HepG2RCC2
PPDPFENSG00000125534.5262.25200105.781301.3098010.377809.45260HepG2NELFE
PPDPFENSG00000125534.5251.3013098.512401.350904.293503.54840HepG2RECQL
PPDPFENSG00000125534.5118.8049058.110501.031603.284802.41280HepG2RPS2
PPDPFENSG00000125534.5133.8701059.322401.174104.496703.10980HepG2RPS5
PPDPFENSG00000125534.5102.1042049.414201.046903.849203.11040HepG2SAFB2
PPDPFENSG00000125534.5179.4019090.905400.980705.833304.87630HepG2SLBP
PPDPFENSG00000125534.5101.3087057.620400.814002.679702.04340HepG2SMN1
PPDPFENSG00000125534.5119.7527052.784801.181804.181702.18550HepG2SND1
PPDPFENSG00000125534.598.4689039.667701.311602.658101.38260HepG2SNRNP200
PPDPFENSG00000125534.573.36140157.45340-1.101803.329102.46820HepG2SNRNP70
PPDPFENSG00000125534.5165.70220279.11220-0.752302.477501.99380HepG2SRFBP1
PPDPFENSG00000125534.571.88250152.30070-1.083203.693502.51980HepG2SRSF3
PPDPFENSG00000125534.5138.5386093.608100.565501.936501.40100HepG2SRSF5
PPDPFENSG00000125534.541.7321084.03140-1.009803.190302.60660HepG2SRSF9
PPDPFENSG00000125534.5421.76720242.298500.799603.903203.31710HepG2SSB
PPDPFENSG00000125534.5175.02670106.457800.717203.487702.80440HepG2SUCLG1
PPDPFENSG00000125534.5288.35550194.294200.569502.300501.43740HepG2SUPT6H
PPDPFENSG00000125534.5190.2351054.402901.8059014.2971013.15710HepG2TRIM56
PPDPFENSG00000125534.589.05710246.24630-1.467303.710102.98560HepG2U2AF1
PPDPFENSG00000125534.5190.8982098.039900.961303.752402.77120HepG2UBE2L3
PPDPFENSG00000125534.5155.0866074.333001.060902.864002.12650HepG2XRN2
PPDPFENSG00000125534.5119.93630183.46300-0.613202.308201.68750HepG2ZC3H8
PPDPFENSG00000125534.5281.22530208.037300.434802.161001.66050HepG2ZNF622
PPDPFENSG00000125534.5756.61230569.398100.410002.819001.58180K562ABCF1
PPDPFENSG00000125534.55132.424401860.951001.4635029.4119027.66280K562AGGF1
PPDPFENSG00000125534.51505.31650980.832900.6179011.097908.22700K562AKAP1
PPDPFENSG00000125534.54015.506502045.249600.973207.564305.72840K562AKAP8
PPDPFENSG00000125534.55055.512801936.489001.384308.426207.22440K562AKAP8L
PPDPFENSG00000125534.5644.115701225.47050-0.927903.055702.44560K562AQR
PPDPFENSG00000125534.51201.98240958.455500.326503.810301.35310K562ASCC1
PPDPFENSG00000125534.54275.819002032.003801.0732017.5376015.00960K562ATP5C1
PPDPFENSG00000125534.5633.81920315.774801.005108.206905.87300K562BCCIP
PPDPFENSG00000125534.5756.20650305.172201.3091027.3535024.53240K562BCLAF1
PPDPFENSG00000125534.51333.90550553.422301.269104.339602.96240K562CCAR1
PPDPFENSG00000125534.5517.66550276.827000.902903.478102.03050K562CIRBP
PPDPFENSG00000125534.5989.31690714.497300.469403.227101.64970K562CKAP4
PPDPFENSG00000125534.51851.288001061.749500.802002.629601.55230K562CPEB4
PPDPFENSG00000125534.5427.53690317.234700.430402.409801.67320K562CPSF6
PPDPFENSG00000125534.5817.32470231.518701.819703.163202.02270K562CSTF2
PPDPFENSG00000125534.51628.83100860.890900.919804.106602.61060K562DDX21
PPDPFENSG00000125534.51557.65680993.866200.648202.700301.67000K562DDX3X
PPDPFENSG00000125534.51516.466001007.659300.589608.558905.96110K562DDX6
PPDPFENSG00000125534.51141.23870534.369001.094606.159405.14980K562EIF2S2
PPDPFENSG00000125534.51348.97010935.116800.528507.917505.82210K562EIF4B
PPDPFENSG00000125534.5968.89560409.371401.2428021.6338018.98960K562FIP1L1
PPDPFENSG00000125534.5449.123301079.85520-1.2657031.8223029.90200K562FXR1
PPDPFENSG00000125534.5391.46000246.949400.664504.214302.41370K562G3BP1
PPDPFENSG00000125534.513.91270116.74800-3.068905.778004.67150K562G3BP2
PPDPFENSG00000125534.5411.47770302.884900.441902.345401.61340K562GPKOW
PPDPFENSG00000125534.51940.88530648.120001.582302.762601.54610K562HNRNPA2B1
PPDPFENSG00000125534.5769.25220426.937200.849302.581202.00180K562HNRNPC
PPDPFENSG00000125534.5166.70430257.94450-0.629802.872301.61500K562HNRNPK
PPDPFENSG00000125534.51618.716501214.014000.415002.769201.87450K562HNRNPU
PPDPFENSG00000125534.5978.40240258.394001.920804.784903.27660K562IGF2BP2
PPDPFENSG00000125534.5557.63730262.779301.0854013.8573011.08820K562IGF2BP3
PPDPFENSG00000125534.5536.33260271.457200.9823011.523209.72780K562MAGOH
PPDPFENSG00000125534.53334.459301967.191700.761206.117004.27590K562MAK16
PPDPFENSG00000125534.5534.24570270.890500.979703.069702.09510K562MATR3
PPDPFENSG00000125534.5500.86190295.647900.760406.706005.31050K562METAP2
PPDPFENSG00000125534.5647.626801036.84360-0.679004.274002.73210K562NCBP2
PPDPFENSG00000125534.5643.92560261.580801.299503.092301.70330K562NONO
PPDPFENSG00000125534.51957.18660566.653301.7881016.9091013.78670K562PABPN1
PPDPFENSG00000125534.5394.42460265.398000.571504.059702.40910K562PCBP1
PPDPFENSG00000125534.51087.53040464.771401.2264011.685109.65980K562PPIG
PPDPFENSG00000125534.52172.33770673.424201.6896013.7307010.12290K562PPP1R8
PPDPFENSG00000125534.5402.85620263.745500.611003.901503.12580K562PTBP1
PPDPFENSG00000125534.53849.439601919.857601.0035011.3749010.32160K562PUS1
PPDPFENSG00000125534.54104.937701871.115901.1334014.0132012.67240K562RBM15
PPDPFENSG00000125534.5707.53020349.847701.016003.805702.63960K562RCC2
PPDPFENSG00000125534.5908.666901543.87050-0.764706.375405.17850K562SF3A3
PPDPFENSG00000125534.51522.11670631.352701.269507.933705.35590K562SFPQ
PPDPFENSG00000125534.51466.18930432.323501.7618048.3243044.23250K562SRSF4
PPDPFENSG00000125534.5753.96000244.229201.6262030.0315026.44190K562SRSF5
PPDPFENSG00000125534.5607.35490261.664601.214704.320803.42930K562TARDBP
PPDPFENSG00000125534.5903.90730252.411701.8403038.0861034.66930K562TIA1
PPDPFENSG00000125534.5663.50750247.751001.421106.431304.60120K562TRA2A
PPDPFENSG00000125534.5858.61260391.750401.132002.648601.72720K562TRIM56
PPDPFENSG00000125534.5741.96110478.675900.632205.338603.26510K562TRIP6
PPDPFENSG00000125534.551.55590116.68990-1.178502.276301.54900K562U2AF2
PPDPFENSG00000125534.52987.349901947.150600.617402.773501.47930K562UTP18
PPDPFENSG00000125534.5560.99640269.023301.060202.639901.46590K562XRN2
PPDPFENSG00000125534.52039.012901380.304200.562807.115405.62050K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PPDPF is not available on ENCORE database.





5 RBPs can affect the splicing of PPDPF :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPPDPFENSG00000125534.5chr20+6215263662152716621521276215224762152864621532910.076000.000000.02980includedK562AATF
SEPPDPFENSG00000125534.5chr20+621526366215271662152076621522476215286462152942-0.065000.000000.00026excludedK562HNRNPL
SEPPDPFENSG00000125534.5chr20+621526366215271662152127621522476215286462153291-0.087000.000010.01806excludedK562LARP7
SEPPDPFENSG00000125534.5chr20+621526366215271662152127621522476215286462153291-0.073000.000010.01676excludedK562AARS
SEPPDPFENSG00000125534.5chr20+621526366215271662152127621522476215286462153291-0.128000.000000.00000excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PPDPF is not avaliable on ENCORE database.