POLR1D

General Information

Gene Name       : POLR1D
Gene ID             : ENSG00000186184.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: POLR1D)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878POLR1DENSG00000186184.17183.14151.90167.52ENCSR000AEF
HepG2POLR1DENSG00000186184.17133.38229.97181.68ENCSR985KAT
K562POLR1DENSG00000186184.17111.25114.06112.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for POLR1D is not avaliable on ENCORE database.



Proteins bound to RNA
  • POLR1D RNA is bound by 15 proteins.  







eCLIP assay for POLR1D is not avaliable on ENCORE database.





15 proteins are bound to POLR1D RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr132819742328197510+3'-UTR,intron-Distal4.315805.42839K562PABPC4
chr132824130328241362+3'-UTR4.422004.29122K562IGF2BP2
chr132819737528197477+3'-UTR,CDS,intron-Distal3.0790611.60723HepG2LARP4
chr132819751028197553+3'-UTR,intron-Distal4.548494.27202K562PABPC4
chr132824122928241303+3'-UTR5.290347.77688K562IGF2BP2
chr132824004528240114+3'-UTR,CDS4.530334.95438K562YBX3
chr132824094928241046+3'-UTR4.159493.25872K562IGF2BP1
chr132819746228197542+3'-UTR,intron-Distal4.160996.20881HepG2SUB1
chr132819608228196157+5'-UTR,CDS,intron-Proximal3.327594.24058K562GRWD1
chr132819602128196100+5'-UTR3.522488.86075K562DDX3X
chr132819600328196065+5'-UTR3.120948.66768K562YBX3
chr132819701328197100+CDS,intron-Distal3.7985912.18084HepG2GRWD1
chr132819722128197310+CDS,intron-Distal4.310455.87922HepG2IGF2BP3
chr132819722628197305+CDS,intron-Distal3.004045.73561HepG2IGF2BP1
chr132819700728197073+CDS,intron-Distal,intron-Proximal4.119664.13050K562LIN28B
chr132819711128197193+CDS,intron-Distal3.706483.77463K562ZNF800
chr132819721128197309+CDS,intron-Distal4.041763.88696K562GRWD1
chr132819708728197149+CDS,intron-Distal5.487386.23813HepG2SUB1
chr132819732128197352+CDS,intron-Distal3.599813.28764HepG2LARP4
chr132819613528196223+CDS,intron-Proximal3.186184.91041HepG2AQR
chr132819716628197292+CDS,intron-Distal4.019986.46298K562PUM1
chr132819719328197318+CDS,intron-Distal4.351247.00156K562ZNF800
chr132819731328197357+CDS,intron-Distal3.581125.31167HepG2GRWD1
chr132819708928197190+CDS,intron-Distal5.014547.11126HepG2ZNF800
chr132819701328197079+CDS,intron-Distal3.041896.56117K562YBX3
chr132819719028197328+CDS,intron-Distal3.621728.14124HepG2ZNF800
chr132819759028197692+intron-Distal4.411585.43661HepG2CSTF2
chr132819617028196248+intron-Distal,intron-Proximal3.404528.63702HepG2EFTUD2
chr132819614628196191+intron-Proximal3.964544.49024K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for POLR1D is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for POLR1D is not available on ENCORE database.

  • 114 RBPs can affect the levels of POLR1D.  








The Knockdown/knockout RNA-Seq assay for POLR1D is not available on ENCORE database.





114 RBPs can affect the gene expression of POLR1D :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
POLR1DENSG00000186184.112655.345301643.006800.6925011.111009.15590HepG2AATF
POLR1DENSG00000186184.111587.996202539.08290-0.677105.142103.89850HepG2ABCF1
POLR1DENSG00000186184.113156.423205084.74030-0.687907.861807.01510HepG2AKAP1
POLR1DENSG00000186184.111350.174202108.89970-0.6433015.7128014.09570HepG2AKAP8L
POLR1DENSG00000186184.112878.663304207.18020-0.547506.148304.99990HepG2ASCC1
POLR1DENSG00000186184.115288.569003531.133600.5826018.2159016.74300HepG2AUH
POLR1DENSG00000186184.111908.172801518.027100.329902.733302.13830HepG2BOP1
POLR1DENSG00000186184.111600.920302209.93510-0.465106.261405.16180HepG2CALR
POLR1DENSG00000186184.112576.356503997.11580-0.633608.331407.04620HepG2CIRBP
POLR1DENSG00000186184.111535.312601941.25840-0.338505.775904.63040HepG2DDX19B
POLR1DENSG00000186184.111088.110601812.51630-0.7362011.2987010.03880HepG2DDX21
POLR1DENSG00000186184.112355.351104870.76330-1.0482019.7628018.25250HepG2DDX3X
POLR1DENSG00000186184.113370.421501582.559301.090609.597007.85170HepG2DDX59
POLR1DENSG00000186184.111607.966002226.89900-0.469804.724203.42420HepG2DDX5
POLR1DENSG00000186184.112307.760704184.16460-0.8584011.8992010.72490HepG2DDX6
POLR1DENSG00000186184.111424.120002008.12170-0.495809.443008.34130HepG2DKC1
POLR1DENSG00000186184.112079.817201796.149800.211402.022201.41150HepG2DNAJC21
POLR1DENSG00000186184.11860.854602055.78350-1.2558025.3988023.14320HepG2EEF2
POLR1DENSG00000186184.111295.023801713.75860-0.404203.362402.13600HepG2EFTUD2
POLR1DENSG00000186184.112697.498004022.26130-0.576406.636505.74190HepG2EIF2S1
POLR1DENSG00000186184.111517.604301925.41070-0.343402.682801.53370HepG2EIF2S2
POLR1DENSG00000186184.111262.858801668.81130-0.402103.013902.07430HepG2EIF3D
POLR1DENSG00000186184.111112.743401711.74980-0.621409.442407.68550HepG2EIF3G
POLR1DENSG00000186184.111383.964604445.03400-1.6834039.8034037.44200HepG2EIF4A3
POLR1DENSG00000186184.112559.339004327.93610-0.757907.431706.33500HepG2EIF4B
POLR1DENSG00000186184.113842.621803026.552000.344306.145304.98700HepG2EIF4G1
POLR1DENSG00000186184.112272.713804054.19880-0.8350033.4247031.74300HepG2ETF1
POLR1DENSG00000186184.111611.183002051.14810-0.348303.429102.49730HepG2EWSR1
POLR1DENSG00000186184.112144.228701727.358700.311802.806401.65570HepG2FASTKD2
POLR1DENSG00000186184.112351.571004484.96670-0.9315016.3120014.78020HepG2FXR1
POLR1DENSG00000186184.111855.072104160.40450-1.1652022.0310020.23120HepG2G3BP1
POLR1DENSG00000186184.112600.515404416.88080-0.7642011.809609.98250HepG2G3BP2
POLR1DENSG00000186184.11758.021601485.85290-0.9710014.8273012.91460HepG2GEMIN5
POLR1DENSG00000186184.113194.852902003.949700.6728020.6162018.39850HepG2HDGF
POLR1DENSG00000186184.11877.538501813.35840-1.0471021.1291019.63180HepG2HNRNPA1
POLR1DENSG00000186184.111280.210002017.05540-0.655909.280808.07050HepG2HNRNPC
POLR1DENSG00000186184.112092.930001784.793000.229702.538901.85090HepG2HNRNPF
POLR1DENSG00000186184.113341.952904212.92610-0.334103.065102.33140HepG2HNRNPK
POLR1DENSG00000186184.113898.434802794.635400.4801015.6331014.14860HepG2HNRNPL
POLR1DENSG00000186184.111372.127101768.28350-0.365902.773401.82300HepG2HNRNPM
POLR1DENSG00000186184.112452.770602003.717700.291604.398803.64960HepG2HNRNPU
POLR1DENSG00000186184.111923.578404228.93890-1.1365023.5805021.85090HepG2IGF2BP2
POLR1DENSG00000186184.111801.483603968.76240-1.139506.322904.86660HepG2IGF2BP3
POLR1DENSG00000186184.112478.867402046.726200.276304.877903.92660HepG2ILF2
POLR1DENSG00000186184.112749.551204253.62970-0.629505.695204.20440HepG2KHSRP
POLR1DENSG00000186184.111847.829503221.79330-0.802008.996107.49450HepG2LARP4
POLR1DENSG00000186184.111504.385404486.53300-1.5764041.4266039.15870HepG2MAGOH
POLR1DENSG00000186184.111637.084604511.62510-1.4625032.2261030.25210HepG2MATR3
POLR1DENSG00000186184.111524.336702074.01120-0.444203.931302.97190HepG2MSI2
POLR1DENSG00000186184.111822.136604617.88410-1.3416029.6231027.71510HepG2NCBP2
POLR1DENSG00000186184.112409.199103457.81810-0.521303.678202.03400HepG2NKRF
POLR1DENSG00000186184.113892.888003042.094600.355704.952303.93700HepG2NOL12
POLR1DENSG00000186184.112517.962704112.45790-0.707709.277107.97400HepG2PABPC4
POLR1DENSG00000186184.112505.050201983.300600.336805.296404.17350HepG2PARN
POLR1DENSG00000186184.113079.776604044.49390-0.393108.571507.60040HepG2PCBP1
POLR1DENSG00000186184.111436.333901962.95680-0.450602.555201.55740HepG2PCBP2
POLR1DENSG00000186184.111902.591402185.50790-0.200002.053201.37870HepG2PRPF4
POLR1DENSG00000186184.111353.006302063.51620-0.608904.132102.65740HepG2PRPF6
POLR1DENSG00000186184.112422.067604115.34750-0.7648027.8909026.50580HepG2PTBP1
POLR1DENSG00000186184.112016.801402903.91420-0.525907.527006.60600HepG2PUF60
POLR1DENSG00000186184.112741.862203082.59630-0.169002.527601.95520HepG2PUM1
POLR1DENSG00000186184.111571.503202137.89020-0.444009.219408.20410HepG2PUS1
POLR1DENSG00000186184.113174.792204457.18550-0.489509.587608.52560HepG2QKI
POLR1DENSG00000186184.115518.748802710.267301.0258034.9278032.54670HepG2RBM15
POLR1DENSG00000186184.112691.515003388.56320-0.332304.969104.32580HepG2RBM22
POLR1DENSG00000186184.112168.921804045.12090-0.8992022.5016020.69260HepG2RBM25
POLR1DENSG00000186184.115631.256004060.334400.471803.203701.55060HepG2RBM47
POLR1DENSG00000186184.111456.270601857.03330-0.350702.890501.80630HepG2RCC2
POLR1DENSG00000186184.111654.317004580.05000-1.4691094.2767092.26310HepG2NELFE
POLR1DENSG00000186184.112396.260804265.57920-0.8320034.3266032.61700HepG2RECQL
POLR1DENSG00000186184.111274.737401860.88160-0.545803.377702.33400HepG2RPS10
POLR1DENSG00000186184.11760.962701623.85950-1.0935024.0257022.50300HepG2RPS19
POLR1DENSG00000186184.111197.258702109.06310-0.8169012.7021011.08470HepG2RPS2
POLR1DENSG00000186184.111495.636304222.39640-1.4973026.2664023.92850HepG2RPS3A
POLR1DENSG00000186184.111579.710002152.92620-0.446604.218002.87660HepG2RPS5
POLR1DENSG00000186184.111283.858701629.74440-0.344202.552601.64780HepG2SERBP1
POLR1DENSG00000186184.112705.429504284.74470-0.6634022.4017020.98910HepG2SF3B4
POLR1DENSG00000186184.111415.704902080.86150-0.5557015.8851014.53500HepG2SMN1
POLR1DENSG00000186184.112272.005401660.315500.452402.471901.73400HepG2SNRNP70
POLR1DENSG00000186184.115294.268603827.263000.4680014.3974013.49120HepG2SRFBP1
POLR1DENSG00000186184.111689.560604472.29000-1.4044096.3568094.50550HepG2SRSF1
POLR1DENSG00000186184.112192.204202867.14820-0.387207.299606.34940HepG2SRSF5
POLR1DENSG00000186184.112143.292201753.510300.289503.806903.01010HepG2SRSF7
POLR1DENSG00000186184.111611.595303322.98010-1.0440049.0097047.50420HepG2SSB
POLR1DENSG00000186184.114920.291803635.580300.436503.567102.12590HepG2SSRP1
POLR1DENSG00000186184.112835.353703260.77510-0.201702.563001.95980HepG2SUCLG1
POLR1DENSG00000186184.11923.949201469.79110-0.669705.915704.98400HepG2SUPV3L1
POLR1DENSG00000186184.113060.776804019.71380-0.393206.952606.13280HepG2TAF15
POLR1DENSG00000186184.111164.942001469.52240-0.335102.519601.82290HepG2TARDBP
POLR1DENSG00000186184.112271.148603570.96510-0.652903.058901.93970HepG2TBRG4
POLR1DENSG00000186184.11656.211701946.87560-1.5689055.4479053.75040HepG2TIAL1
POLR1DENSG00000186184.111992.801902836.94110-0.509507.561906.00610HepG2TUFM
POLR1DENSG00000186184.111585.44900868.288100.8685012.3494010.77010HepG2UCHL5
POLR1DENSG00000186184.111455.761901883.94460-0.372006.109705.13930HepG2UPF1
POLR1DENSG00000186184.111370.158502156.80600-0.6546019.6467018.14540HepG2ZC3H8
POLR1DENSG00000186184.111659.443602071.97340-0.320305.833705.11660HepG2ZNF622
POLR1DENSG00000186184.112670.409302015.601500.405807.832006.94640K562AGGF1
POLR1DENSG00000186184.112624.972102097.330900.323603.025002.34120K562AKAP8L
POLR1DENSG00000186184.112615.334601902.686100.458905.313604.54630K562AQR
POLR1DENSG00000186184.111226.863301538.36320-0.326402.541401.78870K562CPSF6
POLR1DENSG00000186184.112755.487002256.839600.287903.656502.62970K562DKC1
POLR1DENSG00000186184.11651.14370960.39480-0.560703.735202.21750K562EEF2
POLR1DENSG00000186184.11833.72920994.80940-0.254802.113801.41060K562EIF3G
POLR1DENSG00000186184.111144.525001468.80350-0.359902.481001.72620K562GPKOW
POLR1DENSG00000186184.112294.712201925.128900.253302.106301.44070K562GRSF1
POLR1DENSG00000186184.112560.953201634.446600.647802.782301.55980K562HNRNPA2B1
POLR1DENSG00000186184.11817.817901279.19330-0.645408.383407.39550K562HNRNPC
POLR1DENSG00000186184.11902.855801142.42180-0.339502.672601.55380K562HNRNPF
POLR1DENSG00000186184.112380.510401818.575500.388403.602702.69850K562HSPD1
POLR1DENSG00000186184.113161.762102225.770700.506306.889005.44840K562KIF1C
POLR1DENSG00000186184.112783.811002130.627800.385703.124801.96440K562MAK16
POLR1DENSG00000186184.111135.147601465.51190-0.368503.574502.51250K562MATR3
POLR1DENSG00000186184.113514.819102493.428400.495202.862301.93320K562MBNL1
POLR1DENSG00000186184.111117.850701433.69700-0.359003.094302.16590K562METAP2
POLR1DENSG00000186184.112585.911301747.714600.565104.645103.40770K562NAA15
POLR1DENSG00000186184.112333.620901429.218500.707203.089702.03200K562PABPN1
POLR1DENSG00000186184.11835.765501061.67770-0.345202.939902.11300K562POLR2G
POLR1DENSG00000186184.111172.103101426.77600-0.283702.353901.73380K562PTBP1
POLR1DENSG00000186184.113753.056302079.932900.8514015.8791014.61910K562PUS1
POLR1DENSG00000186184.113144.249702026.617600.6335012.1412010.90220K562RBM15
POLR1DENSG00000186184.11911.352001392.08800-0.611205.949604.41480K562RPS3
POLR1DENSG00000186184.112092.458401306.792000.679102.680401.50380K562SF1
POLR1DENSG00000186184.112473.817001501.182500.720502.883101.62060K562SNRNP200
POLR1DENSG00000186184.111348.758301585.81750-0.233602.481901.59000K562SRPK2
POLR1DENSG00000186184.11975.811301415.56610-0.536705.364804.36240K562TARDBP
POLR1DENSG00000186184.11693.182301103.16620-0.670306.572605.07630K562TIAL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for POLR1D is not available on ENCORE database.





12 RBPs can affect the splicing of POLR1D :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPOLR1DENSG00000186184.11chr13+282241782822437828222515282225902823982228241548-0.067000.000020.00085excludedHepG2U2AF1
SEPOLR1DENSG00000186184.11chr13+281970112819724728195473281961462822251528222590-0.289000.000000.00000excludedHepG2PRPF8
SEPOLR1DENSG00000186184.11chr13+282225152822258628196011281961462823982228241547-0.059000.001100.03410excludedK562AKAP8L
SEPOLR1DENSG00000186184.11chr13+2819701128197247281954732819614628222515282225900.106000.003240.03738includedHepG2U2AF2
SEPOLR1DENSG00000186184.11chr13+282241782822437828222515282225902823982228241548-0.287000.000000.00000excludedHepG2U2AF2
SEPOLR1DENSG00000186184.11chr13+282241782822437828222515282225902823982228241548-0.098000.000000.00089excludedHepG2AKAP1
SEPOLR1DENSG00000186184.11chr13+2822417828224378282225152822259028239822282415480.125000.000220.05103includedK562HNRNPA1
SEPOLR1DENSG00000186184.11chr13+2822417828224352282225152822259028239822282415480.268000.000000.00194includedHepG2UCHL5
SEPOLR1DENSG00000186184.11chr13+282225152822258628196011281961462823982228241547-0.083000.000030.00087excludedK562PUS1
SEPOLR1DENSG00000186184.11chr13+2822417828224378282225152822259028239822282415480.153000.000000.00007includedHepG2LARP4
SEPOLR1DENSG00000186184.11chr13+282241782822437828222515282225902823982228241548-0.158000.000000.00000excludedHepG2SRSF1
SEPOLR1DENSG00000186184.11chr13+282241782822437828222515282225902823982228239890-0.097000.000650.03319excludedHepG2SF3B4
SEPOLR1DENSG00000186184.11chr13+282241782822437828222515282225902823982228241548-0.071000.000100.00297excludedK562U2AF2
A3SSPOLR1DENSG00000186184.11chr13+2823976628239890282398222823989028222420282225900.077000.000020.00023longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for POLR1D is not avaliable on ENCORE database.