PNKD

General Information

Gene Name       : PNKD
Gene ID             : ENSG00000127838.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PNKD)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PNKDENSG00000127838.139.9828.2919.13ENCSR000AEF
HepG2PNKDENSG00000127838.1367.8654.6961.27ENCSR985KAT
K562PNKDENSG00000127838.1349.2443.1646.20ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PNKD is not avaliable on ENCORE database.



Proteins bound to RNA
  • PNKD RNA is bound by 11 proteins.  







eCLIP assay for PNKD is not avaliable on ENCORE database.





11 proteins are bound to PNKD RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2219211370219211462+3'-UTR3.586186.25570K562UPF1
chr2219211187219211252+3'-UTR3.184477.95222HepG2PCBP2
chr2219211049219211097+3'-UTR3.506234.74917HepG2PCBP2
chr2219210687219210778+3'-UTR4.305588.55060HepG2UPF1
chr2219211007219211082+3'-UTR3.095473.61668HepG2IGF2BP1
chr2219211184219211290+3'-UTR3.036113.79014HepG2AKAP1
chr2219137520219137624+3'-UTR,intron-Distal4.2501810.20165HepG2LARP4
chr2219210289219210355+3'-UTR4.325275.07111HepG2UPF1
chr2219210682219210781+3'-UTR4.850127.48708HepG2AKAP1
chr2219210471219210523+3'-UTR4.053973.95192HepG2UPF1
chr2219211252219211347+3'-UTR4.0529013.71589HepG2PCBP2
chr2219137410219137520+3'-UTR,CDS,intron-Distal5.6054212.08962HepG2LARP4
chr2219211080219211133+3'-UTR4.368344.44583HepG2UPF1
chr2219210970219211013+3'-UTR3.981783.45012HepG2UPF1
chr2219187904219187957+5'-UTR,intron-Distal4.812793.53084HepG2DDX3X
chr2219187987219188052+5'-UTR,CDS,intron-Distal4.805238.90399HepG2DDX3X
chr2219204834219204903+CDS,intron-Proximal4.950555.60100HepG2PRPF8
chr2219188072219188118+CDS,intron-Distal3.413604.61051HepG2DDX3X
chr2219206191219206321+CDS,intron-Proximal4.207367.79098HepG2PRPF8
chr2219206196219206290+CDS,intron-Proximal4.839556.77156K562AQR
chr2219136103219136153+CDS,intron-Proximal4.138223.72779HepG2LARP4
chr2219206200219206280+CDS,intron-Proximal5.028434.28193HepG2AQR
chr2219209189219209291+CDS3.120224.94718HepG2PPIG
chr2219205503219205557+CDS,intron-Proximal3.995526.95612HepG2PRPF8
chr2219204781219204891+CDS,intron-Proximal3.009893.66193HepG2PPIG
chr2219205507219205556+CDS,intron-Proximal5.395796.75320K562AQR
chr2219188364219188423+intron-Distal4.221404.28089HepG2FAM120A
chr2219188216219188324+intron-Distal,intron-Proximal4.137503.90256HepG2PRPF4
chr2219190754219190871+intron-Distal4.186414.13881HepG2PRPF4
chr2219204865219204961+intron-Proximal4.992115.69951K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PNKD is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PNKD is not available on ENCORE database.

  • 112 RBPs can affect the levels of PNKD.  








The Knockdown/knockout RNA-Seq assay for PNKD is not available on ENCORE database.





112 RBPs can affect the gene expression of PNKD :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PNKDENSG00000127838.9408.94010762.05010-0.8980010.745008.82110HepG2AATF
PNKDENSG00000127838.91083.553401540.71840-0.507803.248302.22800HepG2ABCF1
PNKDENSG00000127838.9808.601001189.53010-0.556909.897108.89180HepG2ACO1
PNKDENSG00000127838.91162.59810776.305100.582604.656803.51530HepG2BCLAF1
PNKDENSG00000127838.91697.892901153.862500.557206.086904.30970HepG2BUD13
PNKDENSG00000127838.92043.573701397.034200.548603.684502.80140HepG2CIRBP
PNKDENSG00000127838.9904.868901189.15270-0.394205.785204.88670HepG2CKAP4
PNKDENSG00000127838.91420.157701105.627000.361102.674001.99650HepG2CPSF6
PNKDENSG00000127838.91684.847601268.211900.409703.663302.39440HepG2CPSF7
PNKDENSG00000127838.91082.55920863.981000.325303.098402.02000HepG2YBX3
PNKDENSG00000127838.91550.100701343.169300.206602.619501.89480HepG2DAZAP1
PNKDENSG00000127838.91210.61380865.185400.484606.235404.56920HepG2DDX1
PNKDENSG00000127838.91350.85780840.221400.684908.950607.80290HepG2DDX21
PNKDENSG00000127838.92337.321701455.021900.683702.957201.61900HepG2DDX47
PNKDENSG00000127838.91227.87440818.246100.585506.694205.22000HepG2DHX30
PNKDENSG00000127838.9857.546601138.02720-0.408204.985504.12610HepG2DKC1
PNKDENSG00000127838.91289.06470840.874000.6163013.7220012.38410HepG2DNAJC2
PNKDENSG00000127838.92404.386201405.671900.7743010.218009.12120HepG2EIF2S1
PNKDENSG00000127838.91108.05930794.032400.480703.766202.72170HepG2EIF3D
PNKDENSG00000127838.91313.590601533.87480-0.223702.499801.92420HepG2ETF1
PNKDENSG00000127838.9892.89590709.822800.330902.569301.44560HepG2FAM120A
PNKDENSG00000127838.9530.02210800.94090-0.595605.889004.32250HepG2FASTKD2
PNKDENSG00000127838.9731.924301227.51220-0.746002.403001.66940HepG2FUBP3
PNKDENSG00000127838.91041.116401544.25080-0.568803.084302.14360HepG2G3BP2
PNKDENSG00000127838.91570.074801253.263000.325001.979701.43210HepG2GPKOW
PNKDENSG00000127838.91353.97900856.490700.660608.384707.34840HepG2HNRNPA1
PNKDENSG00000127838.91493.127401234.510100.274303.200802.20560HepG2HNRNPA2B1
PNKDENSG00000127838.92553.514201196.016601.0941021.0953019.61410HepG2HNRNPLL
PNKDENSG00000127838.91870.582801477.820500.339902.221701.60870HepG2IGF2BP2
PNKDENSG00000127838.9782.131401387.54370-0.827102.339401.44250HepG2IGF2BP3
PNKDENSG00000127838.91254.83490966.705500.376205.920504.88460HepG2ILF2
PNKDENSG00000127838.91337.047601087.305700.298202.819401.79470HepG2KIF1C
PNKDENSG00000127838.92224.422101712.051500.377602.304801.55260HepG2LARP4
PNKDENSG00000127838.9992.832101568.49500-0.659803.869503.09480HepG2MAGOH
PNKDENSG00000127838.9430.83860718.35900-0.737607.044104.59960HepG2MARK2
PNKDENSG00000127838.92424.616201258.474000.9460019.2895017.40040HepG2MSI2
PNKDENSG00000127838.91795.485501056.877200.7645011.340208.93400HepG2NAA15
PNKDENSG00000127838.91946.92380809.084601.2667012.4669010.55390HepG2PABPC1
PNKDENSG00000127838.9731.935001363.41140-0.8974022.8453021.38080HepG2PCBP1
PNKDENSG00000127838.91344.18330844.103800.671104.389203.48130HepG2PPIL4
PNKDENSG00000127838.91428.405201211.596200.237402.559401.96070HepG2PUS1
PNKDENSG00000127838.9319.02660843.23900-1.4023012.1584010.76240HepG2RAVER1
PNKDENSG00000127838.9715.082901282.02880-0.8422016.5131015.46240HepG2RBM22
PNKDENSG00000127838.9796.426101022.99970-0.361202.500701.56210HepG2RBM27
PNKDENSG00000127838.91308.98640830.721300.655905.710804.18380HepG2RCC2
PNKDENSG00000127838.91100.405401543.94940-0.488607.839207.01100HepG2NELFE
PNKDENSG00000127838.9938.435301437.94250-0.6157011.7912010.65310HepG2RECQL
PNKDENSG00000127838.9668.39850943.47020-0.497304.043903.08440HepG2RPS2
PNKDENSG00000127838.9366.08430670.26840-0.872607.663306.43900HepG2RRP9
PNKDENSG00000127838.91193.27050842.801400.501608.391407.35920HepG2SAFB2
PNKDENSG00000127838.91459.54520775.407100.9124013.1852011.22200HepG2SERBP1
PNKDENSG00000127838.91166.246601541.07080-0.402102.252101.64280HepG2SF3A3
PNKDENSG00000127838.91450.270701183.790600.292802.040101.42920HepG2SF3B1
PNKDENSG00000127838.91031.050101444.39950-0.486407.676606.76990HepG2SF3B4
PNKDENSG00000127838.91614.498401219.275600.405006.932105.90320HepG2SLBP
PNKDENSG00000127838.91140.03060861.228700.404502.234101.38280HepG2SMNDC1
PNKDENSG00000127838.91317.59510507.840501.375405.809603.72010HepG2SNRNP200
PNKDENSG00000127838.9990.503901507.62270-0.6060012.0873011.24860HepG2SRSF1
PNKDENSG00000127838.9948.129501273.84690-0.426002.540201.58500HepG2SRSF3
PNKDENSG00000127838.9807.068101255.46850-0.637509.230408.17610HepG2SRSF5
PNKDENSG00000127838.9840.197201257.17970-0.5814010.494609.62000HepG2SSB
PNKDENSG00000127838.9667.30110874.46290-0.390102.240201.62280HepG2SUPV3L1
PNKDENSG00000127838.9649.829101355.06080-1.0602025.9039024.42010HepG2TAF15
PNKDENSG00000127838.91631.082101165.881900.484304.765603.84860HepG2TARDBP
PNKDENSG00000127838.91214.17310919.591500.400804.190803.60300HepG2TIAL1
PNKDENSG00000127838.91507.86520927.815000.7005016.3437015.12680HepG2TRIM56
PNKDENSG00000127838.9729.887801330.42670-0.866106.239605.31270HepG2U2AF1
PNKDENSG00000127838.92617.883501366.693600.9376027.9513026.20540HepG2UPF1
PNKDENSG00000127838.91088.65100800.691500.443102.229701.33440HepG2UPF2
PNKDENSG00000127838.91597.427501319.489900.275703.303902.66010HepG2UTP3
PNKDENSG00000127838.91911.160601503.102200.346406.411505.66920HepG2ZNF622
PNKDENSG00000127838.9888.245601219.71450-0.457503.990202.50060K562ABCF1
PNKDENSG00000127838.9665.73220506.690200.393703.424401.72110K562AKAP1
PNKDENSG00000127838.9977.04250795.592800.296301.919901.37150K562AKAP8L
PNKDENSG00000127838.9453.523901131.21500-1.3186022.5534021.05990K562AQR
PNKDENSG00000127838.91081.51090834.760000.373503.773002.69360K562ATP5C1
PNKDENSG00000127838.9593.03760859.99220-0.536204.315703.21830K562BOP1
PNKDENSG00000127838.91174.46660913.749100.362003.322902.01620K562CCDC124
PNKDENSG00000127838.9747.71720914.40890-0.290302.095601.40430K562CPSF6
PNKDENSG00000127838.9683.44470513.367700.412703.080901.97740K562DDX3X
PNKDENSG00000127838.91079.470301290.06980-0.257102.482101.86010K562DDX47
PNKDENSG00000127838.9659.96700520.474000.342502.583101.33430K562DDX6
PNKDENSG00000127838.91037.03210856.142700.276402.397401.58950K562DKC1
PNKDENSG00000127838.9580.64570797.97020-0.458703.396101.89770K562DNAJC21
PNKDENSG00000127838.9516.68070754.80720-0.546802.424701.48820K562EIF3A
PNKDENSG00000127838.9415.16460536.32180-0.369402.219401.48110K562EIF4A3
PNKDENSG00000127838.9628.18050482.967000.379202.959601.75410K562EIF4B
PNKDENSG00000127838.91138.690601395.80970-0.293703.305502.28090K562EIF4G2
PNKDENSG00000127838.9627.63880468.141100.422903.185801.78050K562EWSR1
PNKDENSG00000127838.9468.99970704.13250-0.586304.434902.94640K562FKBP4
PNKDENSG00000127838.9554.71760788.61250-0.507603.747602.66950K562FTO
PNKDENSG00000127838.979.67710282.00780-1.8235015.2401013.27510K562G3BP2
PNKDENSG00000127838.9878.762901080.52710-0.298202.660501.54040K562GLRX3
PNKDENSG00000127838.9668.42630873.02790-0.385302.806302.00590K562GPKOW
PNKDENSG00000127838.9891.833001260.67000-0.499305.174904.13670K562GRSF1
PNKDENSG00000127838.9774.27460993.01860-0.359002.533301.50470K562HNRNPA1
PNKDENSG00000127838.9465.83180810.64190-0.799309.671608.61030K562HNRNPC
PNKDENSG00000127838.9729.28710989.68720-0.440503.911601.66050K562HNRNPH1
PNKDENSG00000127838.9900.157601188.71030-0.401103.182202.33260K562HSPD1
PNKDENSG00000127838.9706.68240480.789100.555602.679501.67420K562IGF2BP2
PNKDENSG00000127838.9662.67990488.928900.438603.276201.94760K562IGF2BP3
PNKDENSG00000127838.9568.06990775.31690-0.448702.965801.41760K562ILF3
PNKDENSG00000127838.9727.433401136.02380-0.6431011.300409.78590K562MTPAP
PNKDENSG00000127838.91035.395001262.27790-0.285803.758102.90410K562NSUN2
PNKDENSG00000127838.9581.489301196.48790-1.0410014.1676012.31770K562PCBP3
PNKDENSG00000127838.9499.04080917.71890-0.8789013.4336011.73790K562POLR2G
PNKDENSG00000127838.9949.56040726.853000.385502.690301.80120K562PSIP1
PNKDENSG00000127838.9768.88060490.702400.647807.402006.35270K562PTBP1
PNKDENSG00000127838.9932.615201522.89780-0.707509.594908.05180K562PUF60
PNKDENSG00000127838.9937.03380768.775800.285402.178501.64160K562RBM15
PNKDENSG00000127838.9618.92840458.644200.432302.753901.38090K562RBM34
PNKDENSG00000127838.9952.51420663.292100.522005.291603.91350K562RCC2
PNKDENSG00000127838.9526.14060343.120800.616603.737902.55220K562RPS3
PNKDENSG00000127838.91021.696801245.46660-0.285702.779201.96250K562SF3A3
PNKDENSG00000127838.9579.74490830.30820-0.518203.572602.46120K562SF3B1
PNKDENSG00000127838.9885.55300628.769400.493904.130302.80410K562SRFBP1
PNKDENSG00000127838.9930.232401276.00030-0.456007.537806.06970K562SRPK2
PNKDENSG00000127838.9735.62710481.079300.612606.030304.99520K562SRSF1
PNKDENSG00000127838.9457.34870331.257400.465202.703001.67050K562SRSF4
PNKDENSG00000127838.9349.17440534.74770-0.614903.014301.95180K562SUPV3L1
PNKDENSG00000127838.9119.92520276.83470-1.206906.221903.63960K562TAF15
PNKDENSG00000127838.9689.77710486.824600.502603.223702.46030K562TARDBP
PNKDENSG00000127838.9622.18760469.612800.405802.872402.03650K562TIA1
PNKDENSG00000127838.9655.79310460.969600.508503.921502.58750K562TRA2A
PNKDENSG00000127838.9136.20670273.50210-1.005806.234704.45220K562U2AF1
PNKDENSG00000127838.9131.94400282.42070-1.097909.260207.78380K562U2AF2
PNKDENSG00000127838.91163.168001338.41580-0.202501.971201.35790K562UPF1
PNKDENSG00000127838.9795.402401145.24700-0.525905.924104.61710K562WDR3
PNKDENSG00000127838.9897.493201190.87660-0.408105.927004.73840K562WDR43
PNKDENSG00000127838.9814.130401274.32960-0.646408.081006.48610K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PNKD is not available on ENCORE database.





2 RBPs can affect the splicing of PNKD :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSPNKDENSG00000127838.9chr2+219136103219136272219136146219136272219135207219135325-0.096000.000160.09071shorterHepG2TIA1
MXEPNKDENSG00000127838.9chr2+2192053702192055092192062562192063492192047512192048642192067032192068670.176000.002550.048041includedHepG2SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PNKD is not avaliable on ENCORE database.