NIF3L1

General Information

Gene Name       : NIF3L1
Gene ID             : ENSG00000196290.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NIF3L1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NIF3L1ENSG00000196290.1448.7938.1143.45ENCSR000AEF
HepG2NIF3L1ENSG00000196290.1456.6074.7365.67ENCSR985KAT
K562NIF3L1ENSG00000196290.1436.9643.3140.14ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NIF3L1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • NIF3L1 RNA is bound by 3 proteins.  







eCLIP assay for NIF3L1 is not avaliable on ENCORE database.





3 proteins are bound to NIF3L1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2201768539201768587+3'-UTR4.788745.45041K562PUM2
chr2201756826201756906+CDS5.4478310.49321K562PUM2
chr2201757931201758025+CDS,intron-Proximal3.190575.58362HepG2U2AF2
chr2201764507201764625+intron-Distal3.829813.04224HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NIF3L1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NIF3L1 is not available on ENCORE database.

  • 105 RBPs can affect the levels of NIF3L1.  








The Knockdown/knockout RNA-Seq assay for NIF3L1 is not available on ENCORE database.





105 RBPs can affect the gene expression of NIF3L1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NIF3L1ENSG00000196290.10483.97490728.54010-0.590103.360701.46420HepG2AARS
NIF3L1ENSG00000196290.10482.04540611.28780-0.342702.865302.24860HepG2ACO1
NIF3L1ENSG00000196290.10455.17690614.18530-0.432203.926003.02400HepG2AKAP8L
NIF3L1ENSG00000196290.10691.985801070.55940-0.6296010.723109.51870HepG2AUH
NIF3L1ENSG00000196290.10340.60150645.83480-0.923108.806507.32160HepG2BCLAF1
NIF3L1ENSG00000196290.10528.78490751.42630-0.507004.067803.35810HepG2BOP1
NIF3L1ENSG00000196290.10528.16480724.78760-0.456603.563602.17590HepG2BUD13
NIF3L1ENSG00000196290.10589.567101006.51090-0.7716011.302009.91330HepG2CALR
NIF3L1ENSG00000196290.10420.81530611.18570-0.538406.166705.24580HepG2CKAP4
NIF3L1ENSG00000196290.10302.14890689.83150-1.1910015.3186013.86140HepG2CPSF6
NIF3L1ENSG00000196290.10612.28210796.66520-0.379802.651201.56890HepG2CPSF7
NIF3L1ENSG00000196290.10336.01070459.07470-0.450202.744301.67140HepG2CSTF2
NIF3L1ENSG00000196290.10701.675101105.52070-0.6559010.224609.14020HepG2CELF1
NIF3L1ENSG00000196290.10976.056301188.53250-0.284102.270201.58950HepG2DAZAP1
NIF3L1ENSG00000196290.10450.86570565.36780-0.326502.724001.89570HepG2DDX19B
NIF3L1ENSG00000196290.10362.75850675.84510-0.897707.833106.75030HepG2DDX21
NIF3L1ENSG00000196290.10326.75400553.57010-0.760606.378904.39030HepG2DDX28
NIF3L1ENSG00000196290.10445.92790772.91670-0.793507.332906.35910HepG2DDX3X
NIF3L1ENSG00000196290.10342.50500730.85190-1.0935011.7600010.29850HepG2DDX55
NIF3L1ENSG00000196290.10405.78040783.36050-0.949005.991104.57610HepG2DDX59
NIF3L1ENSG00000196290.10696.76890905.60730-0.378202.592101.60850HepG2DDX5
NIF3L1ENSG00000196290.10547.06500750.46050-0.456104.500903.62040HepG2DNAJC21
NIF3L1ENSG00000196290.10473.90170743.82900-0.6504010.273209.11410HepG2DNAJC2
NIF3L1ENSG00000196290.10384.17460622.02120-0.695204.872903.40020HepG2AGO1
NIF3L1ENSG00000196290.10320.80760638.27420-0.992509.944708.86210HepG2EIF2S1
NIF3L1ENSG00000196290.10400.54190584.76400-0.545903.224402.25370HepG2EIF3D
NIF3L1ENSG00000196290.10379.13470705.39210-0.895708.278907.17760HepG2EIF4A3
NIF3L1ENSG00000196290.10435.21260686.75220-0.658103.925303.11100HepG2EIF4B
NIF3L1ENSG00000196290.10714.732601172.70990-0.7144012.8469011.30690HepG2EIF4G1
NIF3L1ENSG00000196290.10704.442201123.35420-0.673307.199505.91190HepG2EIF4G2
NIF3L1ENSG00000196290.10882.069801229.22600-0.478806.993506.11170HepG2ETF1
NIF3L1ENSG00000196290.10385.37380522.69210-0.439703.203401.93310HepG2FAM120A
NIF3L1ENSG00000196290.10438.23610608.29720-0.473103.022301.69680HepG2FKBP4
NIF3L1ENSG00000196290.10363.72260691.05300-0.926003.911702.70220HepG2FTO
NIF3L1ENSG00000196290.10327.91710523.28190-0.674305.567904.46420HepG2FUBP3
NIF3L1ENSG00000196290.10268.77450520.64800-0.953909.163107.58010HepG2GEMIN5
NIF3L1ENSG00000196290.10509.71610673.21850-0.401402.324701.39470HepG2GNB2L1
NIF3L1ENSG00000196290.10509.04820781.92610-0.619204.702603.88210HepG2GPKOW
NIF3L1ENSG00000196290.10537.52440757.65010-0.495203.933603.18260HepG2HNRNPA1
NIF3L1ENSG00000196290.10705.760901092.37920-0.630209.686508.13310HepG2HNRNPA2B1
NIF3L1ENSG00000196290.10437.93230842.74410-0.9444011.9905010.63770HepG2HNRNPC
NIF3L1ENSG00000196290.10603.27460828.43700-0.457605.361904.40320HepG2HNRNPF
NIF3L1ENSG00000196290.10683.351701082.60940-0.6638010.297209.07510HepG2HNRNPL
NIF3L1ENSG00000196290.10467.20880746.21120-0.675505.890605.00770HepG2HNRNPLL
NIF3L1ENSG00000196290.10530.65410837.17250-0.6578010.214409.11180HepG2HNRNPU
NIF3L1ENSG00000196290.10612.68850815.76960-0.413003.741902.91010HepG2IGF2BP1
NIF3L1ENSG00000196290.10364.02280671.07940-0.882508.472307.35980HepG2IGF2BP2
NIF3L1ENSG00000196290.10583.76310855.14420-0.550808.917707.67460HepG2ILF2
NIF3L1ENSG00000196290.10474.98080674.96570-0.506902.661101.68080HepG2KHSRP
NIF3L1ENSG00000196290.10877.211401210.31210-0.464402.972102.10960HepG2LARP4
NIF3L1ENSG00000196290.10441.60590711.88620-0.688905.650104.72370HepG2MAGOH
NIF3L1ENSG00000196290.10403.73130611.98740-0.600102.967801.87560HepG2METAP2
NIF3L1ENSG00000196290.10613.98360790.58070-0.364702.543001.76560HepG2MSI2
NIF3L1ENSG00000196290.10514.56220732.75510-0.510003.318602.62720HepG2NCBP2
NIF3L1ENSG00000196290.10975.727301178.55570-0.272502.042801.38500HepG2NOL12
NIF3L1ENSG00000196290.10370.66790671.22800-0.856705.153703.63760HepG2NONO
NIF3L1ENSG00000196290.10333.80570652.61060-0.967209.789808.45070HepG2PABPC4
NIF3L1ENSG00000196290.10659.80700828.65940-0.328702.951102.07980HepG2PARN
NIF3L1ENSG00000196290.10456.61740691.88310-0.599503.427702.27460HepG2PCBP2
NIF3L1ENSG00000196290.10577.41240746.69120-0.370903.213902.42510HepG2PPIL4
NIF3L1ENSG00000196290.10226.39840563.67050-1.3160015.3394013.65710HepG2PRPF8
NIF3L1ENSG00000196290.10517.67180685.61550-0.405403.684803.07280HepG2PTBP1
NIF3L1ENSG00000196290.10576.316101125.08270-0.9651015.2746014.02690HepG2PUF60
NIF3L1ENSG00000196290.10703.542301194.38130-0.7636015.5412014.37120HepG2PUM1
NIF3L1ENSG00000196290.10706.206701193.47380-0.7570011.5276010.20910HepG2PUM2
NIF3L1ENSG00000196290.10547.19210742.53490-0.440403.792303.07750HepG2QKI
NIF3L1ENSG00000196290.10406.04270667.68780-0.717503.603302.80160HepG2RAVER1
NIF3L1ENSG00000196290.10770.826001055.24590-0.453104.698703.61710HepG2RBM15
NIF3L1ENSG00000196290.10697.392401027.38870-0.558907.327106.57770HepG2RBM22
NIF3L1ENSG00000196290.10461.91980892.49500-0.9502013.2528011.95940HepG2RPLP0
NIF3L1ENSG00000196290.10403.31890655.86450-0.701504.222603.06140HepG2RPS10
NIF3L1ENSG00000196290.10326.44050569.03210-0.801708.244707.25040HepG2RPS19
NIF3L1ENSG00000196290.10489.08420733.47350-0.584704.649803.62680HepG2RPS2
NIF3L1ENSG00000196290.10324.13140496.44480-0.615103.421202.53110HepG2RPS3A
NIF3L1ENSG00000196290.10334.46390557.57470-0.737305.415304.34940HepG2RRP9
NIF3L1ENSG00000196290.10548.58700745.54000-0.442604.909104.09160HepG2SAFB2
NIF3L1ENSG00000196290.10298.32590738.57190-1.3078019.3859017.69900HepG2SF3B1
NIF3L1ENSG00000196290.10715.090501078.89460-0.5934010.039508.83350HepG2SLBP
NIF3L1ENSG00000196290.10590.80920869.42720-0.557408.580207.54650HepG2SMN1
NIF3L1ENSG00000196290.10583.00870821.80140-0.495302.462901.72630HepG2SNRNP70
NIF3L1ENSG00000196290.10611.532701160.36800-0.9241022.5875021.51550HepG2SRFBP1
NIF3L1ENSG00000196290.10619.061101110.92280-0.8436016.9566015.59410HepG2SRSF5
NIF3L1ENSG00000196290.10480.84770813.92710-0.7593012.5382011.24120HepG2SRSF7
NIF3L1ENSG00000196290.10427.32700606.15160-0.504305.182904.46970HepG2SRSF9
NIF3L1ENSG00000196290.10622.285201007.42230-0.6950012.6606011.72090HepG2SSB
NIF3L1ENSG00000196290.10486.36560652.45680-0.423802.482801.30200HepG2STAU1
NIF3L1ENSG00000196290.10417.70650623.96900-0.579002.817001.60350HepG2SUB1
NIF3L1ENSG00000196290.10898.694101263.36750-0.491407.658506.70970HepG2SUCLG1
NIF3L1ENSG00000196290.10498.43990659.60120-0.404202.654301.73100HepG2SUPT6H
NIF3L1ENSG00000196290.10329.54440727.51620-1.1425012.9356011.65370HepG2SUPV3L1
NIF3L1ENSG00000196290.10371.92550727.46160-0.9679011.4016010.08060HepG2TARDBP
NIF3L1ENSG00000196290.10291.79250487.60690-0.740805.558104.21580HepG2TFIP11
NIF3L1ENSG00000196290.10487.47720615.35700-0.336102.239801.48560HepG2TIA1
NIF3L1ENSG00000196290.10378.28410813.47530-1.1046019.2596018.15800HepG2TIAL1
NIF3L1ENSG00000196290.10538.17420820.74090-0.608908.936308.01260HepG2TRIM56
NIF3L1ENSG00000196290.10788.162801099.25020-0.480004.546803.39470HepG2TUFM
NIF3L1ENSG00000196290.10672.609501163.59950-0.790807.527306.12150HepG2UBE2L3
NIF3L1ENSG00000196290.10411.83470747.49990-0.8600014.5815013.21900HepG2UPF1
NIF3L1ENSG00000196290.10578.76840721.68070-0.318402.531301.95360HepG2UTP3
NIF3L1ENSG00000196290.10531.58100716.16100-0.430002.796302.06820HepG2XRN2
NIF3L1ENSG00000196290.10671.04350834.95290-0.315303.091102.38850HepG2ZC3H8
NIF3L1ENSG00000196290.10464.94250822.10580-0.8223016.3154015.26380HepG2ZNF622
NIF3L1ENSG00000196290.10583.48880818.48210-0.488204.075703.28150K562AKAP8L
NIF3L1ENSG00000196290.10601.16430893.52030-0.571704.734904.00450K562AQR
NIF3L1ENSG00000196290.10419.58220540.13660-0.364402.509001.59710K562BCLAF1
NIF3L1ENSG00000196290.10780.66240973.39460-0.318303.091902.40790K562DDX47
NIF3L1ENSG00000196290.10284.87210389.73160-0.452202.651101.84860K562EIF4A3
NIF3L1ENSG00000196290.10296.31670450.94160-0.605803.242201.68250K562GEMIN5
NIF3L1ENSG00000196290.10390.83080551.50400-0.496803.467502.80950K562HNRNPC
NIF3L1ENSG00000196290.10482.38770631.55930-0.388703.069602.13150K562HNRNPU
NIF3L1ENSG00000196290.10420.35210587.74290-0.483603.765002.77560K562MAGOH
NIF3L1ENSG00000196290.10643.33350811.76730-0.335502.006701.52980K562PUS1
NIF3L1ENSG00000196290.10292.81140445.93520-0.606902.615401.82400K562RPS19
NIF3L1ENSG00000196290.10287.04760423.94350-0.562602.801101.77900K562SUPV3L1
NIF3L1ENSG00000196290.10818.264101006.55910-0.298802.032801.30630K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NIF3L1 is not available on ENCORE database.





3 RBPs can affect the splicing of NIF3L1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENIF3L1ENSG00000196290.10chr2+2017552452017553082017541692017543752017566402017571020.213000.001910.02105includedK562AQR
SENIF3L1ENSG00000196290.10chr2+201761798201761937201759986201760113201764107201764191-0.093000.000090.00153excludedK562AQR
SENIF3L1ENSG00000196290.10chr2+201761798201761937201759986201760113201764107201764191-0.078000.001350.02186excludedK562PUS1
SENIF3L1ENSG00000196290.10chr2+2017552452017553082017541692017543752017566402017571020.657000.000010.00094includedK562HNRNPU
SENIF3L1ENSG00000196290.10chr2+201761798201761937201759986201760113201764107201764191-0.123000.000130.00755excludedK562HNRNPU
SENIF3L1ENSG00000196290.10chr2+2017552452017553082017541692017543752017566402017571020.514000.000000.00001includedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NIF3L1 is not avaliable on ENCORE database.