MKRN1

General Information

Gene Name       : MKRN1
Gene ID             : ENSG00000133606.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MKRN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MKRN1ENSG00000133606.1053.7240.5047.11ENCSR000AEF
HepG2MKRN1ENSG00000133606.1041.4436.2138.83ENCSR985KAT
K562MKRN1ENSG00000133606.1058.3860.7559.56ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MKRN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MKRN1 RNA is bound by 21 proteins.  







eCLIP assay for MKRN1 is not avaliable on ENCORE database.





21 proteins are bound to MKRN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7140156658140156729-3'-UTR,CDS,intron-Distal,intron-Proximal4.320457.08280K562SF3B4
chr7140154350140154414-3'-UTR,CDS,intron-Distal,intron-Proximal3.310053.28366HepG2BCLAF1
chr7140154285140154327-3'-UTR,CDS,intron-Distal4.014153.05875K562RBM15
chr7140154894140154960-3'-UTR,CDS,intron-Distal,intron-Proximal3.428114.37145K562GRWD1
chr7140154975140155045-3'-UTR,CDS,intron-Distal,intron-Proximal3.172523.21655K562U2AF2
chr7140154252140154345-3'-UTR,CDS,intron-Distal,intron-Proximal3.601843.68346K562PUM1
chr7140153086140153155-3'-UTR,intron-Distal3.070715.12571K562ZC3H11A
chr7140159502140159577-3'-UTR,CDS,intron-Distal,intron-Proximal3.051325.04030K562GRWD1
chr7140158730140158822-3'-UTR,CDS,intron-Distal,intron-Proximal3.307388.17562K562AQR
chr7140154894140154979-3'-UTR,CDS,intron-Distal,intron-Proximal4.054703.36483HepG2G3BP1
chr7140154900140155011-3'-UTR,CDS,intron-Distal3.5573211.41791K562UCHL5
chr7140159577140159675-3'-UTR,CDS,intron-Distal,intron-Proximal3.472505.80673K562GRWD1
chr7140156368140156452-3'-UTR,CDS,intron-Distal,intron-Proximal3.552626.69182K562AQR
chr7140156164140156237-3'-UTR,intron-Distal3.569254.43122HepG2SUB1
chr7140153711140153769-3'-UTR,intron-Distal3.482194.53184K562IGF2BP1
chr7140159645140159665-3'-UTR,CDS,intron-Distal,intron-Proximal3.2094014.22757K562YBX3
chr7140154910140154974-3'-UTR,CDS,intron-Distal3.810054.93978HepG2BCLAF1
chr7140155570140155613-3'-UTR,CDS,intron-Distal,intron-Proximal3.521033.12941K562UCHL5
chr7140154939140155022-3'-UTR,CDS,intron-Distal3.011303.23249K562SRSF1
chr7140178575140178664-5'-UTR,intron-Distal3.477183.77567K562NONO
chr7140171681140171734-5'-UTR,CDS,intron-Distal,intron-Proximal3.362373.29600K562LIN28B
chr7140178837140178906-5'-UTR,intron-Distal,intron-Proximal3.396898.32814K562AKAP8L
chr7140171741140171811-5'-UTR,CDS,intron-Distal3.049875.49323K562LIN28B
chr7140171774140171860-5'-UTR,CDS,intron-Distal,intron-Proximal3.3726212.09266K562SF3B4
chr7140154786140154888-intron-Distal,intron-Proximal3.431967.70481K562AQR
chr7140158641140158765-intron-Distal,intron-Proximal5.5159511.11361K562PRPF8
chr7140169798140169850-intron-Distal3.164233.26837HepG2HNRNPC
chr7140157429140157501-intron-Distal3.917503.82697HepG2HNRNPC
chr7140155538140155590-intron-Distal,intron-Proximal5.323596.83960K562AQR
chr7140161336140161440-intron-Distal3.122674.24036K562HNRNPC
chr7140157431140157504-intron-Distal3.314955.09471K562HNRNPC
chr7140171581140171659-intron-Distal,intron-Proximal4.2023912.56991K562TIA1
chr7140164639140164674-intron-Distal3.837683.06194K562ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MKRN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MKRN1 is not available on ENCORE database.

  • 100 RBPs can affect the levels of MKRN1.  








The Knockdown/knockout RNA-Seq assay for MKRN1 is not available on ENCORE database.





100 RBPs can affect the gene expression of MKRN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MKRN1ENSG00000133606.61411.39240999.786300.497305.104303.68820HepG2AATF
MKRN1ENSG00000133606.61380.189801200.880700.200701.941301.41520HepG2ACO1
MKRN1ENSG00000133606.61512.683901206.499600.326204.064603.14860HepG2AKAP8L
MKRN1ENSG00000133606.62216.827901596.886100.473109.093007.96830HepG2AUH
MKRN1ENSG00000133606.61124.399201784.95560-0.666705.707604.28150HepG2CCAR1
MKRN1ENSG00000133606.62432.544901565.988600.635307.669106.43250HepG2CIRBP
MKRN1ENSG00000133606.62009.914801608.593200.321204.181203.42200HepG2CELF1
MKRN1ENSG00000133606.6666.219501064.57720-0.6762010.448008.43380HepG2DDX1
MKRN1ENSG00000133606.6570.71730894.17020-0.647805.058403.37780HepG2DDX27
MKRN1ENSG00000133606.6751.92190955.74660-0.346002.071401.39220HepG2DDX55
MKRN1ENSG00000133606.61626.409901162.995700.483702.215001.34400HepG2DDX59
MKRN1ENSG00000133606.61334.769301148.910200.216201.922501.34250HepG2DKC1
MKRN1ENSG00000133606.6714.869701047.97730-0.551904.761403.58050HepG2EEF2
MKRN1ENSG00000133606.6793.968601003.72060-0.338202.764901.59620HepG2EIF2S2
MKRN1ENSG00000133606.6790.550601173.45020-0.569806.746905.44710HepG2EWSR1
MKRN1ENSG00000133606.61687.056101025.884800.717502.997201.93860HepG2FTO
MKRN1ENSG00000133606.61441.63060974.008000.565606.796705.59670HepG2FUBP3
MKRN1ENSG00000133606.61196.047701629.96950-0.446603.399202.66500HepG2G3BP1
MKRN1ENSG00000133606.6565.08380757.36090-0.422503.002902.06670HepG2GEMIN5
MKRN1ENSG00000133606.61078.925301601.10760-0.569503.759202.45900HepG2GRSF1
MKRN1ENSG00000133606.6955.060301462.37020-0.614604.461202.68470HepG2HNRNPA0
MKRN1ENSG00000133606.61066.496801650.44180-0.630007.424006.32150HepG2HNRNPK
MKRN1ENSG00000133606.61844.752801575.531900.227502.993302.29530HepG2HNRNPL
MKRN1ENSG00000133606.6854.349501164.49880-0.446806.397605.50680HepG2HNRNPU
MKRN1ENSG00000133606.61002.506701647.88680-0.717006.759804.79470HepG2KHDRBS1
MKRN1ENSG00000133606.61401.969401757.69190-0.326202.129901.55190HepG2MAGOH
MKRN1ENSG00000133606.61294.635501767.53610-0.449203.307402.62350HepG2MATR3
MKRN1ENSG00000133606.61333.77330982.385200.441103.936303.04910HepG2NSUN2
MKRN1ENSG00000133606.6900.901501152.63840-0.355504.053103.05120HepG2PARN
MKRN1ENSG00000133606.6745.618401088.33480-0.545603.618101.69700HepG2PHF6
MKRN1ENSG00000133606.6688.38770841.02610-0.288902.483501.74620HepG2PRPF4
MKRN1ENSG00000133606.61010.06490737.091600.454402.974002.13840HepG2PRPF8
MKRN1ENSG00000133606.61415.629901696.54670-0.261202.722402.17820HepG2PTBP1
MKRN1ENSG00000133606.61359.183701737.96550-0.354706.051005.24370HepG2PUM1
MKRN1ENSG00000133606.61846.279701464.621400.334003.432402.48650HepG2RBM15
MKRN1ENSG00000133606.62162.530401532.426500.496808.726407.92540HepG2RBM22
MKRN1ENSG00000133606.61010.599301367.49170-0.436303.297502.20880HepG2RBM27
MKRN1ENSG00000133606.61520.191001888.05970-0.312703.972003.34580HepG2NELFE
MKRN1ENSG00000133606.61508.269101758.53250-0.221502.216201.65720HepG2RECQL
MKRN1ENSG00000133606.61565.540301203.797500.379003.435902.68740HepG2RPLP0
MKRN1ENSG00000133606.6568.81270827.79550-0.541305.262104.44460HepG2RPS19
MKRN1ENSG00000133606.61237.115701736.61370-0.489303.220702.35900HepG2RPS3A
MKRN1ENSG00000133606.61676.603501251.673600.421602.574601.92350HepG2SF3A3
MKRN1ENSG00000133606.61424.966501766.25100-0.309803.800203.12520HepG2SF3B4
MKRN1ENSG00000133606.61171.560401569.83390-0.422207.418706.35560HepG2SLBP
MKRN1ENSG00000133606.6824.386701123.44420-0.446502.587901.66320HepG2SMNDC1
MKRN1ENSG00000133606.61875.039001220.225900.619704.144503.17900HepG2SNRNP70
MKRN1ENSG00000133606.62268.000701730.813000.389907.301506.59380HepG2SRFBP1
MKRN1ENSG00000133606.61574.845701843.61350-0.227302.436901.98550HepG2SRSF1
MKRN1ENSG00000133606.61907.747701499.903500.346905.584204.84750HepG2SRSF9
MKRN1ENSG00000133606.6475.11550892.34660-0.909308.100906.12340HepG2STAU1
MKRN1ENSG00000133606.61479.187001838.40170-0.313604.769503.99190HepG2SUCLG1
MKRN1ENSG00000133606.62325.701901657.194500.488808.623707.72290HepG2TAF15
MKRN1ENSG00000133606.6570.397701141.64630-1.0011025.2758023.78410HepG2TRIM56
MKRN1ENSG00000133606.61577.721101142.939400.465004.042903.28910HepG2U2AF1
MKRN1ENSG00000133606.61069.383601693.03950-0.662806.520805.20330HepG2UBE2L3
MKRN1ENSG00000133606.6919.179001071.70250-0.221501.833101.32360HepG2UTP3
MKRN1ENSG00000133606.61649.181701220.834700.433808.734007.90230HepG2ZNF622
MKRN1ENSG00000133606.6435.483501101.21210-1.3384017.1391013.95110HepG2ZRANB2
MKRN1ENSG00000133606.61504.992801887.37980-0.326602.862001.65840K562AARS
MKRN1ENSG00000133606.65879.800103647.699500.6887010.176909.17850K562AGGF1
MKRN1ENSG00000133606.65814.760704008.711100.536506.040104.45290K562AKAP8
MKRN1ENSG00000133606.66240.160903795.705100.717109.508308.21060K562AKAP8L
MKRN1ENSG00000133606.64924.562503736.979600.398004.517503.80140K562AQR
MKRN1ENSG00000133606.65172.130803982.813300.376902.335901.50330K562ATP5C1
MKRN1ENSG00000133606.63023.078101935.742200.643008.576306.99620K562BOP1
MKRN1ENSG00000133606.62879.389002237.376000.363902.829301.39460K562BUD13
MKRN1ENSG00000133606.64347.035403428.306000.342403.337901.91760K562CIRBP
MKRN1ENSG00000133606.66131.828903780.984000.697504.880903.42090K562CNOT7
MKRN1ENSG00000133606.62609.424002058.166400.342303.736902.82630K562CPSF6
MKRN1ENSG00000133606.66619.226405511.093500.264202.842601.85590K562CELF1
MKRN1ENSG00000133606.61371.075201871.55310-0.448903.662902.11650K562DDX27
MKRN1ENSG00000133606.63674.559102594.312000.502107.797805.95970K562DDX3X
MKRN1ENSG00000133606.62889.943803386.86420-0.228902.484701.86200K562DDX47
MKRN1ENSG00000133606.61511.920601189.765900.345602.695801.37240K562DNAJC21
MKRN1ENSG00000133606.62620.056302030.038000.368003.368602.35790K562EFTUD2
MKRN1ENSG00000133606.61585.300702114.27520-0.415405.896704.74800K562EIF3G
MKRN1ENSG00000133606.63082.571602308.998000.416804.462603.36700K562FIP1L1
MKRN1ENSG00000133606.63192.941002094.296000.608308.361806.83070K562FMR1
MKRN1ENSG00000133606.62794.841301775.174500.654708.083906.42970K562FTO
MKRN1ENSG00000133606.62468.100501869.181200.400904.042502.38400K562FUS
MKRN1ENSG00000133606.62083.323602818.80190-0.436207.583506.64780K562FXR1
MKRN1ENSG00000133606.62878.006101964.976100.550507.623106.30210K562GPKOW
MKRN1ENSG00000133606.66456.951003919.515500.720103.877602.35220K562HNRNPA2B1
MKRN1ENSG00000133606.62310.794503194.86830-0.467404.671403.02880K562HNRNPK
MKRN1ENSG00000133606.65089.864503450.334400.560803.093901.58050K562ILF2
MKRN1ENSG00000133606.66514.215004027.811800.693509.630107.83490K562KIF1C
MKRN1ENSG00000133606.62518.147003361.75350-0.416905.157004.00220K562MAGOH
MKRN1ENSG00000133606.65601.300803855.915200.538603.439302.19940K562MAK16
MKRN1ENSG00000133606.62708.388903354.98750-0.308903.217002.21670K562MATR3
MKRN1ENSG00000133606.66267.500104512.219600.474002.226301.42520K562MBNL1
MKRN1ENSG00000133606.62466.450101918.064000.362703.739402.71100K562METAP2
MKRN1ENSG00000133606.66885.521704776.799700.527407.154805.37530K562MSI2
MKRN1ENSG00000133606.62147.452402652.27200-0.304604.954303.89630K562MTPAP
MKRN1ENSG00000133606.65667.083803162.772600.841306.579005.00160K562NAA15
MKRN1ENSG00000133606.63608.859602706.487700.415005.620403.88310K562NCBP2
MKRN1ENSG00000133606.63582.309002946.831100.281606.853605.75180K562NSUN2
MKRN1ENSG00000133606.64935.504603632.412500.442202.527701.36150K562PABPC1
MKRN1ENSG00000133606.64935.934303429.622600.525202.323501.43140K562PABPN1
MKRN1ENSG00000133606.61484.088802016.22900-0.442104.569302.68080K562PHF6
MKRN1ENSG00000133606.62458.360801975.459600.315402.516301.80070K562PRPF8
MKRN1ENSG00000133606.62558.849703266.12750-0.352104.100303.30780K562PTBP1
MKRN1ENSG00000133606.610316.498703763.522801.4547024.6616023.04650K562PUS1
MKRN1ENSG00000133606.66716.150103667.628400.8727017.6865016.16480K562RBM15
MKRN1ENSG00000133606.63500.224902463.183200.506807.397705.13200K562RBM25
MKRN1ENSG00000133606.62667.659003295.90500-0.305102.417301.40850K562NELFE
MKRN1ENSG00000133606.61492.729302012.25880-0.430903.239302.35490K562RPS19
MKRN1ENSG00000133606.62035.876902549.91300-0.324802.421001.49090K562RPS3
MKRN1ENSG00000133606.61320.543901616.93860-0.292102.368001.37110K562SAFB
MKRN1ENSG00000133606.64493.428302907.891200.6277017.5338015.63060K562SF3A3
MKRN1ENSG00000133606.61184.654401601.48610-0.434904.158202.82490K562SRFBP1
MKRN1ENSG00000133606.65130.164803201.854000.6800014.4805012.85870K562SRSF1
MKRN1ENSG00000133606.62111.778802770.79680-0.391803.279201.88890K562STAU1
MKRN1ENSG00000133606.61397.087801820.14150-0.381604.285603.25780K562SYNCRIP
MKRN1ENSG00000133606.61477.227201892.04500-0.357103.040202.03890K562TRIM56
MKRN1ENSG00000133606.63509.920403016.458200.218502.871701.57730K562TROVE2
MKRN1ENSG00000133606.63320.055302600.029800.352604.384303.37760K562U2AF2
MKRN1ENSG00000133606.61944.418603124.59390-0.6843021.7177019.94250K562UPF1
MKRN1ENSG00000133606.66493.134203816.604000.766504.580202.75930K562UTP18
MKRN1ENSG00000133606.66233.721504209.154100.566509.094107.40570K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MKRN1 is not available on ENCORE database.





8 RBPs can affect the splicing of MKRN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMKRN1ENSG00000133606.6chr7-140155589140155689140154894140155033140156451140156615-0.061000.004820.07193excludedK562SF3B4
SEMKRN1ENSG00000133606.6chr7-140174180140174289140171682140171811140178959140179155-0.067000.001140.04152excludedK562PRPF8
SEMKRN1ENSG00000133606.6chr7-140174180140174289140171682140171811140178959140179155-0.064000.002380.09546excludedK562EFTUD2
SEMKRN1ENSG00000133606.6chr7-140155589140155700140154894140155033140156451140156666-0.054000.000000.00033excludedK562TARDBP
A3SSMKRN1ENSG00000133606.6chr7-1401550181401551051401550181401550331401555891401557000.112000.000000.00000longerK562AQR
A3SSMKRN1ENSG00000133606.6chr7-1401544641401546811401544641401545291401548941401551050.082000.000000.00000longerK562AQR
A3SSMKRN1ENSG00000133606.6chr7-1401555891401557991401555891401557001401564511401566660.069000.000000.00000longerK562AQR
A3SSMKRN1ENSG00000133606.6chr7-140154894140155700140154894140155033140156451140156666-0.071000.000000.00011shorterK562PUS1
A3SSMKRN1ENSG00000133606.6chr7-140154894140155700140154894140155033140156451140156666-0.113000.000000.00223shorterK562TARDBP
RIMKRN1ENSG00000133606.6chr7-1401548941401557001401548941401550331401555891401557000.093000.000000.00020includedK562PHF6
RIMKRN1ENSG00000133606.6chr7-140154894140155700140154894140155033140155589140155700-0.052000.000170.01155excludedK562SUPV3L1
RIMKRN1ENSG00000133606.6chr7-1401548941401557001401548941401550331401555891401557000.069000.000170.00133includedK562AQR
RIMKRN1ENSG00000133606.6chr7-140154894140155700140154894140155056140155589140155700-0.257000.000320.00238excludedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MKRN1 is not avaliable on ENCORE database.