LRRC3

General Information

Gene Name       : LRRC3
Gene ID             : ENSG00000160233.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LRRC3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LRRC3ENSG00000160233.70.050.080.07ENCSR000AEF
HepG2LRRC3ENSG00000160233.710.625.207.91ENCSR985KAT
K562LRRC3ENSG00000160233.70.010.010.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LRRC3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LRRC3 RNA is bound by 8 proteins.  







eCLIP assay for LRRC3 is not avaliable on ENCORE database.





8 proteins are bound to LRRC3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr214587861245878718+3'-UTR3.9750614.42945HepG2AKAP1
chr214587848045878571+3'-UTR4.395624.80665HepG2QKI
chr214587806345878143+3'-UTR4.5250110.03265HepG2AKAP1
chr214587860445878722+3'-UTR4.2677610.98729HepG2FUBP3
chr214587862045878711+3'-UTR3.9988812.00733HepG2UPF1
chr214587794845878056+3'-UTR6.5187822.93802HepG2UPF1
chr214587737245877454+3'-UTR4.8321714.51224HepG2UPF1
chr214587862445878696+3'-UTR4.450176.71233HepG2TIA1
chr214587860245878690+3'-UTR5.4248111.29882HepG2TIAL1
chr214587805645878131+3'-UTR5.4410123.76594HepG2UPF1
chr214587736745877438+3'-UTR3.948525.82440HepG2AKAP1
chr214587542545875521+5'-UTR3.427314.00333HepG2EIF3H
chr214587542045875537+5'-UTR5.8774344.05234HepG2DDX3X
chr214587638545876436+5'-UTR4.8349811.51889HepG2DDX3X
chr214587643845876542+5'-UTR,CDS3.9987014.65904HepG2DDX3X
chr214587658945876642+CDS3.978749.32503HepG2DDX3X
chr214587658745876640+CDS3.193753.41666HepG2UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LRRC3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LRRC3 is not available on ENCORE database.

  • 108 RBPs can affect the levels of LRRC3.  








The Knockdown/knockout RNA-Seq assay for LRRC3 is not available on ENCORE database.





108 RBPs can affect the gene expression of LRRC3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LRRC3ENSG00000160233.6189.01200363.07080-0.941807.339905.69090HepG2AATF
LRRC3ENSG00000160233.6184.80220589.01860-1.6723037.7664036.14900HepG2ACO1
LRRC3ENSG00000160233.6188.984801402.98250-2.8922030.2705028.74480HepG2AKAP1
LRRC3ENSG00000160233.6451.13460791.02560-0.810202.830701.78120HepG2AKAP8
LRRC3ENSG00000160233.6415.57970591.76520-0.509905.011804.00510HepG2AKAP8L
LRRC3ENSG00000160233.6842.988901160.76120-0.461502.858502.06130HepG2ASCC1
LRRC3ENSG00000160233.6392.14080585.98560-0.579505.813504.87980HepG2AUH
LRRC3ENSG00000160233.6365.42470218.359600.742803.538102.52570HepG2BCLAF1
LRRC3ENSG00000160233.6394.54350562.12660-0.510702.631601.68410HepG2CCAR1
LRRC3ENSG00000160233.6822.322101102.83180-0.423402.502301.76230HepG2CIRBP
LRRC3ENSG00000160233.6407.07180588.86560-0.532705.916905.01140HepG2CKAP4
LRRC3ENSG00000160233.6109.39420413.56820-1.9186017.5648015.69730HepG2CNOT7
LRRC3ENSG00000160233.6395.00890162.766901.279007.154706.09060HepG2CPSF6
LRRC3ENSG00000160233.6385.93240283.272300.446102.763101.74570HepG2YBX3
LRRC3ENSG00000160233.6228.95490371.93030-0.700003.290401.76770HepG2CSTF2T
LRRC3ENSG00000160233.6197.02610405.80840-1.0424011.4679010.33470HepG2CELF1
LRRC3ENSG00000160233.6639.81660436.322800.552206.708305.62770HepG2DAZAP1
LRRC3ENSG00000160233.6522.15650391.929600.413802.707301.80550HepG2DDX24
LRRC3ENSG00000160233.6622.185601343.76000-1.110908.512207.46520HepG2DDX3X
LRRC3ENSG00000160233.6984.39170569.111500.790409.403907.67290HepG2DDX5
LRRC3ENSG00000160233.6345.629101154.76760-1.7403016.2648014.93080HepG2DDX6
LRRC3ENSG00000160233.6542.34910268.274801.0154011.705309.87240HepG2DHX30
LRRC3ENSG00000160233.6986.41850563.524700.8076014.7657013.46130HepG2DKC1
LRRC3ENSG00000160233.6529.66830278.147800.9291011.9816010.60020HepG2DNAJC21
LRRC3ENSG00000160233.6150.13780357.29100-1.250804.942503.76090HepG2EIF3D
LRRC3ENSG00000160233.6490.72010378.107700.376002.318801.32820HepG2EIF3G
LRRC3ENSG00000160233.6412.350401194.18130-1.5341012.5021011.09520HepG2EIF4B
LRRC3ENSG00000160233.6548.33590412.366400.411002.456701.68720HepG2EIF4G2
LRRC3ENSG00000160233.6976.82930672.809600.537807.005606.12320HepG2ETF1
LRRC3ENSG00000160233.6404.47680575.55430-0.508904.006003.00250HepG2EWSR1
LRRC3ENSG00000160233.6257.16170381.50720-0.569003.570802.29560HepG2FASTKD2
LRRC3ENSG00000160233.6229.33310697.25650-1.604204.046103.12940HepG2FIP1L1
LRRC3ENSG00000160233.6308.41090163.075800.919202.988201.93130HepG2FTO
LRRC3ENSG00000160233.6208.94850460.33750-1.139508.956807.08370HepG2FUS
LRRC3ENSG00000160233.6470.382001237.72530-1.3958012.0501010.71030HepG2FXR1
LRRC3ENSG00000160233.6526.098101147.82780-1.125508.665707.52450HepG2G3BP1
LRRC3ENSG00000160233.6749.91830184.469602.0233032.9355031.01280HepG2GPKOW
LRRC3ENSG00000160233.6185.27290382.85890-1.047206.976805.22040HepG2GRSF1
LRRC3ENSG00000160233.6242.73900433.89900-0.838004.883702.87670HepG2GTF2F1
LRRC3ENSG00000160233.6393.13640280.812600.485302.754702.10940HepG2HNRNPA1
LRRC3ENSG00000160233.6193.68970341.57050-0.818404.920303.03340HepG2HNRNPAB
LRRC3ENSG00000160233.6615.25320358.236800.780205.623803.48840HepG2HNRNPD
LRRC3ENSG00000160233.6531.17190184.478201.5256027.6977025.78930HepG2HNRNPF
LRRC3ENSG00000160233.6412.836301163.08260-1.4943012.7748011.38380HepG2HNRNPK
LRRC3ENSG00000160233.6596.12840176.046301.7596025.2296023.63960HepG2HNRNPLL
LRRC3ENSG00000160233.6504.26450860.83760-0.771602.709201.49590HepG2HSPD1
LRRC3ENSG00000160233.6649.15280181.656101.8372032.0387029.93350HepG2IGF2BP1
LRRC3ENSG00000160233.6310.734101095.31490-1.8176011.9237010.01470HepG2IGF2BP3
LRRC3ENSG00000160233.6598.35410403.197400.569403.003301.61670HepG2ILF3
LRRC3ENSG00000160233.6736.017301173.64870-0.673203.356402.24000HepG2KHSRP
LRRC3ENSG00000160233.6235.97450593.67690-1.3310013.5887011.78550HepG2LARP4
LRRC3ENSG00000160233.6181.15130341.88530-0.916307.066205.29980HepG2LARP7
LRRC3ENSG00000160233.6727.685601244.98390-0.774705.011204.18460HepG2MATR3
LRRC3ENSG00000160233.6130.73530373.88710-1.516005.755004.28290HepG2METAP2
LRRC3ENSG00000160233.6539.93720179.630401.5877014.3681012.16860HepG2MTPAP
LRRC3ENSG00000160233.6745.564201274.22380-0.773205.325304.46130HepG2NCBP2
LRRC3ENSG00000160233.6647.81340156.127302.0528034.7918032.65050HepG2NSUN2
LRRC3ENSG00000160233.6636.23140378.026700.751003.542902.52970HepG2PABPC1
LRRC3ENSG00000160233.6178.87830307.13030-0.779906.102604.92240HepG2PARN
LRRC3ENSG00000160233.6515.946801267.23280-1.2964040.7677038.93350HepG2PCBP1
LRRC3ENSG00000160233.6684.58140276.752601.3065025.5965023.52080HepG2PPIL4
LRRC3ENSG00000160233.6637.59380364.417800.8069011.158509.75400HepG2PRPF4
LRRC3ENSG00000160233.6389.031601289.44800-1.7288052.7945051.06420HepG2PTBP1
LRRC3ENSG00000160233.6909.68490413.015601.139106.795005.91600HepG2PUF60
LRRC3ENSG00000160233.6296.56700438.44110-0.564005.006704.25660HepG2PUM1
LRRC3ENSG00000160233.6858.02320599.950000.516105.153404.36000HepG2PUS1
LRRC3ENSG00000160233.6951.098701396.52260-0.554207.868406.89710HepG2QKI
LRRC3ENSG00000160233.6135.69420420.47050-1.6316011.8052010.42530HepG2RAVER1
LRRC3ENSG00000160233.6486.00510755.66100-0.636806.731105.46980HepG2RBM15
LRRC3ENSG00000160233.6143.09560562.34020-1.9745038.3334036.84130HepG2RBM22
LRRC3ENSG00000160233.6767.306501267.42700-0.7240010.503609.24960HepG2RBM25
LRRC3ENSG00000160233.6456.143201435.03910-1.6535060.9851059.23980HepG2NELFE
LRRC3ENSG00000160233.6919.672201336.53070-0.539308.905307.89390HepG2RECQL
LRRC3ENSG00000160233.6454.46520198.760701.1930012.1059010.85480HepG2RPLP0
LRRC3ENSG00000160233.6138.26270347.73030-1.330606.386205.49350HepG2RPS19
LRRC3ENSG00000160233.6694.87710415.362700.742305.235304.13230HepG2RPS3A
LRRC3ENSG00000160233.6268.85120388.11570-0.529702.893001.79080HepG2RPS5
LRRC3ENSG00000160233.698.16190188.44500-0.940904.005203.08040HepG2RRP9
LRRC3ENSG00000160233.6440.07600276.324800.671306.672205.73620HepG2SAFB2
LRRC3ENSG00000160233.6574.84900391.134200.555403.272901.85620HepG2SART3
LRRC3ENSG00000160233.6511.50230977.12300-0.933808.914307.65020HepG2SF3A3
LRRC3ENSG00000160233.6569.58580174.228401.7088014.9245013.42800HepG2SF3B1
LRRC3ENSG00000160233.6594.762001342.49750-1.1745034.1231032.46310HepG2SF3B4
LRRC3ENSG00000160233.61116.32210396.031501.4950053.7411051.49870HepG2SLBP
LRRC3ENSG00000160233.6196.03290322.23930-0.717006.006305.11510HepG2SMN1
LRRC3ENSG00000160233.6251.29310428.98080-0.771504.815403.52000HepG2SMNDC1
LRRC3ENSG00000160233.6186.84450635.13530-1.7652039.9932038.66780HepG2SRFBP1
LRRC3ENSG00000160233.6284.548901401.27030-2.30000105.22210103.31980HepG2SRSF1
LRRC3ENSG00000160233.6474.98950181.251201.3898021.8422020.23590HepG2SRSF7
LRRC3ENSG00000160233.6435.398901140.00250-1.3886044.8721043.18720HepG2SRSF9
LRRC3ENSG00000160233.6906.94130551.435100.7177012.1863011.25990HepG2SSB
LRRC3ENSG00000160233.6490.21920858.20230-0.807902.800501.51240HepG2SSRP1
LRRC3ENSG00000160233.6171.30710361.34650-1.076808.250106.24310HepG2STIP1
LRRC3ENSG00000160233.6358.65070463.77500-0.370802.486801.89130HepG2SUCLG1
LRRC3ENSG00000160233.6351.750401259.49870-1.8402063.2003060.96070HepG2TAF15
LRRC3ENSG00000160233.6387.71680171.695101.175103.483002.68060HepG2TARDBP
LRRC3ENSG00000160233.6835.600801157.32650-0.469904.423103.37420HepG2TIA1
LRRC3ENSG00000160233.6524.94060403.509800.379502.320601.52660HepG2TUFM
LRRC3ENSG00000160233.6343.63920596.16140-0.794802.036401.48840HepG2U2AF1
LRRC3ENSG00000160233.666.15400145.29500-1.135103.961403.05270HepG2UCHL5
LRRC3ENSG00000160233.6332.28600836.62820-1.3322031.0710029.39430HepG2UTP3
LRRC3ENSG00000160233.6679.99220372.045700.869906.871005.14630HepG2XPO5
LRRC3ENSG00000160233.6234.77690413.55450-0.816804.415902.81320HepG2XRCC5
LRRC3ENSG00000160233.6208.65250462.45360-1.148209.199607.39320HepG2XRCC6
LRRC3ENSG00000160233.6427.15660242.171800.818604.467703.55390HepG2XRN2
LRRC3ENSG00000160233.6523.96760359.631000.542905.398804.51050HepG2ZC3H8
LRRC3ENSG00000160233.61302.68220953.048600.450808.037807.23190HepG2ZNF622
LRRC3ENSG00000160233.6606.35120420.172200.529102.926301.58830HepG2ZRANB2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LRRC3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LRRC3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LRRC3 is not avaliable on ENCORE database.