KCMF1

General Information

Gene Name       : KCMF1
Gene ID             : ENSG00000176407.17
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: KCMF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCMF1ENSG00000176407.1745.6432.8039.22ENCSR000AEF
HepG2KCMF1ENSG00000176407.1748.8758.5553.71ENCSR985KAT
K562KCMF1ENSG00000176407.1737.5935.4836.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCMF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KCMF1 RNA is bound by 29 proteins.  







eCLIP assay for KCMF1 is not avaliable on ENCORE database.





29 proteins are bound to KCMF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr28525500985255062+3'-UTR,CDS,intron-Proximal5.026405.82881K562DDX3X
chr28528192285282026+3'-UTR4.474739.53993HepG2PTBP1
chr28528062885280697+3'-UTR4.567025.80303K562IGF2BP1
chr28528071885280807+3'-UTR3.793425.86394K562IGF2BP2
chr28528189085282005+3'-UTR4.360817.08067K562PTBP1
chr28528069785280841+3'-UTR3.173505.64266K562IGF2BP1
chr28528070485280777+3'-UTR4.2330212.93110HepG2U2AF2
chr28519846685198566+5'-UTR3.5365211.10936HepG2DDX3X
chr28519825385198337+5'-UTR6.4089310.46216HepG2DDX3X
chr28519855885198696+5'-UTR,CDS,intron-Distal,intron-Proximal3.5452910.05760HepG2PRPF8
chr28519921285199282+5'-UTR,intron-Distal3.719365.85439HepG2CSTF2T
chr28519823285198282+5'-UTR3.760725.34749HepG2FAM120A
chr28519823385198294+5'-UTR3.428653.41960K562GTF2F1
chr28519845385198591+5'-UTR,CDS,intron-Proximal4.476636.82597K562DDX3X
chr28519915585199212+5'-UTR,intron-Distal3.069763.27222HepG2CSTF2T
chr28519827785198383+5'-UTR3.000193.24220HepG2SRSF1
chr28527070785270739+CDS3.4429210.55267K562YBX3
chr28527073985270776+CDS3.9586011.68628K562YBX3
chr28527074585270788+CDS3.930533.80193HepG2GRWD1
chr28528027085280342+CDS,intron-Proximal3.877543.81856K562IGF2BP1
chr28527326085273308+CDS3.395934.96321K562LIN28B
chr28527330885273363+CDS3.244626.31840K562LIN28B
chr28527659685276687+CDS3.142915.39224HepG2IGF2BP1
chr28527068785270745+CDS3.080313.40321HepG2GRWD1
chr28527665885276709+CDS3.255664.08171K562YBX3
chr28519892385198976+intron-Distal5.027305.80475HepG2XPO5
chr28521781585217884+intron-Distal3.880345.63625HepG2HNRNPM
chr28523670085236746+intron-Distal4.022013.62238HepG2MATR3
chr28526790285267945+intron-Distal3.304793.10640HepG2SUGP2
chr28519886585198923+intron-Distal3.695355.37374HepG2XPO5
chr28522894785229048+intron-Distal4.8685512.18529HepG2QKI
chr28521809585218150+intron-Distal3.651343.66782HepG2HNRNPM
chr28525117285251318+intron-Distal4.109104.31512K562KHSRP
chr28522604985226117+intron-Distal5.111795.89856K562PTBP1
chr28522975485229871+intron-Distal3.919239.60589HepG2QKI
chr28526486185264935+intron-Distal3.741533.14375HepG2RBFOX2
chr28523480685234926+intron-Distal3.9512311.56896K562KHSRP
chr28523683185236922+intron-Distal3.140284.63410HepG2SUGP2
chr28527275285272827+intron-Distal3.780453.20552HepG2KHSRP
chr28526585585265952+intron-Distal3.955413.95921HepG2U2AF2
chr28519883585198954+intron-Distal4.7043829.84218HepG2NKRF
chr28526988685269962+intron-Distal4.861475.77028HepG2PCBP2
chr28519884585198928+intron-Distal3.438473.14777HepG2GTF2F1
chr28526833285268373+intron-Distal4.006983.54208HepG2SUGP2
chr28521254785212619+intron-Distal3.518663.89405HepG2PTBP1
chr28521725185217301+intron-Distal3.694923.42785HepG2HNRNPM
chr28521164485211693+intron-Distal4.414084.54503HepG2ILF3
chr28521692085217016+intron-Distal4.153113.04182K562HNRNPM
chr28519885185198928+intron-Distal4.8034410.00122HepG2FAM120A
chr28521692185216982+intron-Distal4.021414.25236HepG2HNRNPM
chr28523937485239511+intron-Distal4.4662212.03011K562KHSRP
chr28525128185251360+intron-Distal3.585673.16095HepG2U2AF2
chr28520001785200123+intron-Distal3.113453.04623HepG2KHSRP
chr28521683785216959+intron-Distal4.5183412.26070HepG2EXOSC5
chr28520007385200174+intron-Distal3.228837.63715K562KHSRP
chr28521245385212584+intron-Distal3.858963.27714HepG2HNRNPL
chr28526232985262394+intron-Distal,intron-Proximal4.073683.31283K562PRPF8
chr28523654285236584+intron-Distal4.111273.63454HepG2SUGP2
chr28519891985198996+intron-Distal3.163673.46580HepG2CSTF2T
chr28521145985211527+intron-Distal3.860724.53895HepG2ILF3
chr28524333985243403+intron-Distal3.422343.30286HepG2PTBP1
chr28523675785236848+intron-Distal3.661117.93237K562PTBP1
chr28519868785198734+intron-Distal,intron-Proximal3.190465.29427HepG2RBM22
chr28519885085198905+intron-Distal4.0208910.03671HepG2XRN2
chr28522003885220121+intron-Distal3.279344.14989HepG2ILF3
chr28522615485226228+intron-Distal4.123663.42885K562AGGF1
chr28519884285198910+intron-Distal3.488065.70053K562GEMIN5
chr28521790585218033+intron-Distal5.0306610.13530HepG2EXOSC5
chr28526987885269955+intron-Distal3.912613.28841HepG2PTBP1
chr28519884985198918+intron-Distal3.448776.62443K562CSTF2T
chr28523674985236855+intron-Distal3.9271511.35846HepG2PTBP1
chr28519884585198909+intron-Distal3.312513.48123K562XRN2
chr28524930685249436+intron-Distal4.051503.37208HepG2ILF3
chr28522604585226133+intron-Distal5.283869.16934HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KCMF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCMF1 is not available on ENCORE database.

  • 93 RBPs can affect the levels of KCMF1.  








The Knockdown/knockout RNA-Seq assay for KCMF1 is not available on ENCORE database.





93 RBPs can affect the gene expression of KCMF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCMF1ENSG00000176407.13848.804401359.54260-0.679607.070805.65770HepG2ABCF1
KCMF1ENSG00000176407.131288.844601068.015400.271003.027302.39630HepG2ACO1
KCMF1ENSG00000176407.131873.057401398.301300.421607.165206.14390HepG2AUH
KCMF1ENSG00000176407.131626.511201140.901200.511505.534404.72310HepG2BOP1
KCMF1ENSG00000176407.131301.248601959.73450-0.590804.705403.42020HepG2CCAR1
KCMF1ENSG00000176407.13742.435301067.80230-0.524308.814307.75770HepG2CKAP4
KCMF1ENSG00000176407.13961.656101713.32110-0.833206.511005.33730HepG2CNOT7
KCMF1ENSG00000176407.131227.74410935.847200.391604.443303.15350HepG2YBX3
KCMF1ENSG00000176407.131805.653101392.632700.374605.293304.45730HepG2CELF1
KCMF1ENSG00000176407.13780.82130987.77000-0.339204.131003.13480HepG2DDX19B
KCMF1ENSG00000176407.131289.66330843.267500.612805.503604.45780HepG2DDX55
KCMF1ENSG00000176407.131797.166201189.408700.595403.171202.12530HepG2DDX59
KCMF1ENSG00000176407.132898.876001433.740701.0156013.1635011.93610HepG2DDX6
KCMF1ENSG00000176407.13611.500001021.80620-0.7407013.0052011.75770HepG2DKC1
KCMF1ENSG00000176407.13672.334001023.15680-0.605805.455804.19830HepG2EEF2
KCMF1ENSG00000176407.131096.29520830.560700.400402.779601.87430HepG2EIF3D
KCMF1ENSG00000176407.13841.546901522.74890-0.855609.774608.58680HepG2EIF4A3
KCMF1ENSG00000176407.131137.272301415.14560-0.315402.228301.49180HepG2EIF4G2
KCMF1ENSG00000176407.13904.696201177.54510-0.380303.081001.93240HepG2ESF1
KCMF1ENSG00000176407.131288.608501015.835400.343002.790702.00060HepG2FUBP3
KCMF1ENSG00000176407.131136.011901536.77970-0.435903.540002.76410HepG2FXR1
KCMF1ENSG00000176407.13953.449601425.38340-0.580105.215604.31570HepG2G3BP1
KCMF1ENSG00000176407.131047.947501513.49520-0.530305.026003.81600HepG2G3BP2
KCMF1ENSG00000176407.13487.65170739.50270-0.600705.241204.00430HepG2GEMIN5
KCMF1ENSG00000176407.13928.181101187.31200-0.355202.133801.56730HepG2GPKOW
KCMF1ENSG00000176407.13646.93370927.74460-0.520104.732203.91780HepG2HNRNPA1
KCMF1ENSG00000176407.131079.182501363.98360-0.337904.723603.85930HepG2HNRNPL
KCMF1ENSG00000176407.13723.175101025.11760-0.503407.327706.37810HepG2HNRNPU
KCMF1ENSG00000176407.131160.719001566.68850-0.432702.771501.54210HepG2HSPD1
KCMF1ENSG00000176407.131206.055101047.124500.203802.025501.38680HepG2ILF2
KCMF1ENSG00000176407.13993.962301565.31520-0.655204.865303.20060HepG2KRR1
KCMF1ENSG00000176407.131048.498701537.31800-0.552105.066004.18690HepG2MAGOH
KCMF1ENSG00000176407.13892.691001545.85870-0.792208.640107.57640HepG2MATR3
KCMF1ENSG00000176407.13775.484601155.60120-0.575503.462302.37080HepG2MTPAP
KCMF1ENSG00000176407.131183.61270932.788100.343502.494501.34330HepG2NAA15
KCMF1ENSG00000176407.131176.407701582.22080-0.427603.201702.52290HepG2NCBP2
KCMF1ENSG00000176407.133534.593701566.295801.174102.759101.87210HepG2PABPC1
KCMF1ENSG00000176407.131089.461201424.95170-0.387305.185804.39660HepG2PCBP1
KCMF1ENSG00000176407.13499.29720686.85570-0.460103.966102.48690HepG2PKM
KCMF1ENSG00000176407.131158.993101450.00290-0.323203.615703.00830HepG2PTBP1
KCMF1ENSG00000176407.13842.496301417.38310-0.7505011.1258010.03850HepG2PUF60
KCMF1ENSG00000176407.131243.665601504.62900-0.274803.542902.88890HepG2PUM1
KCMF1ENSG00000176407.13787.289601087.84580-0.466506.963306.06300HepG2PUS1
KCMF1ENSG00000176407.131779.32030978.743500.862206.176405.14880HepG2RAVER1
KCMF1ENSG00000176407.131697.137701341.800500.338804.117403.51770HepG2RBM22
KCMF1ENSG00000176407.131735.970101425.159800.284502.457801.81870HepG2RBM25
KCMF1ENSG00000176407.131039.556701613.66310-0.6344012.4258011.43450HepG2NELFE
KCMF1ENSG00000176407.13938.992801503.00020-0.6787013.9286012.71030HepG2RECQL
KCMF1ENSG00000176407.13854.580901721.41550-1.010309.418007.97180HepG2RPS3A
KCMF1ENSG00000176407.131088.24630912.915200.253402.518801.89930HepG2SAFB2
KCMF1ENSG00000176407.132547.793901515.542300.7493025.3239024.20640HepG2SRFBP1
KCMF1ENSG00000176407.131223.979101575.66770-0.364404.917804.33380HepG2SRSF1
KCMF1ENSG00000176407.131768.748301281.928200.464308.946508.05430HepG2SRSF9
KCMF1ENSG00000176407.13536.616501315.89860-1.2941042.2241040.79580HepG2SSB
KCMF1ENSG00000176407.131153.486701560.61100-0.436103.004201.66930HepG2SSRP1
KCMF1ENSG00000176407.131403.61730914.641100.617804.173502.68040HepG2SUB1
KCMF1ENSG00000176407.131308.188901591.57570-0.282903.700802.99980HepG2SUCLG1
KCMF1ENSG00000176407.131212.43190926.751900.387503.229502.21870HepG2SUPT6H
KCMF1ENSG00000176407.131159.67930839.513000.466003.564102.81140HepG2SUPV3L1
KCMF1ENSG00000176407.13845.413401532.88630-0.858504.531603.19040HepG2TBRG4
KCMF1ENSG00000176407.131294.445001004.996600.365004.906304.19880HepG2TRIM56
KCMF1ENSG00000176407.131106.966801384.74650-0.323002.698101.83630HepG2TUFM
KCMF1ENSG00000176407.131700.221401174.172600.534004.592903.79360HepG2U2AF1
KCMF1ENSG00000176407.13739.90860495.962500.577004.952403.93030HepG2UCHL5
KCMF1ENSG00000176407.13853.392901098.61050-0.364402.858001.79530HepG2UTP18
KCMF1ENSG00000176407.131429.711401031.944100.470307.593406.68110HepG2UTP3
KCMF1ENSG00000176407.131764.730401175.545100.5860011.1071010.19200HepG2ZNF622
KCMF1ENSG00000176407.132141.104801473.666400.5388011.7408010.66640K562AGGF1
KCMF1ENSG00000176407.131989.316101619.358000.296802.472301.55130K562AKAP8
KCMF1ENSG00000176407.132180.063901533.421900.507506.230505.22210K562AKAP8L
KCMF1ENSG00000176407.133118.986301705.866100.8705014.1682012.98460K562AQR
KCMF1ENSG00000176407.131977.821401608.938700.297702.637101.74540K562ATP5C1
KCMF1ENSG00000176407.131286.92180905.381200.507205.910804.32000K562DDX3X
KCMF1ENSG00000176407.133413.428001686.411201.0172043.2115040.93600K562DDX47
KCMF1ENSG00000176407.13946.90540575.864300.717404.375703.08490K562EIF3A
KCMF1ENSG00000176407.131350.58650908.581400.571804.883003.46140K562EIF3D
KCMF1ENSG00000176407.131339.89790791.165000.7600013.7963011.98180K562EIF3G
KCMF1ENSG00000176407.131286.77310983.701800.387404.622303.86740K562FXR1
KCMF1ENSG00000176407.132064.170101306.761600.659502.955501.68610K562HNRNPA2B1
KCMF1ENSG00000176407.131486.294101051.217000.499604.084002.93840K562HNRNPM
KCMF1ENSG00000176407.132467.432401732.796300.509805.840004.69750K562HSPD1
KCMF1ENSG00000176407.132390.064501627.325500.554407.750606.19690K562KIF1C
KCMF1ENSG00000176407.132010.834401557.765900.368203.400802.17130K562MAK16
KCMF1ENSG00000176407.13929.722901141.25380-0.295702.295201.46160K562MATR3
KCMF1ENSG00000176407.131967.040301277.805300.622305.230403.88390K562NAA15
KCMF1ENSG00000176407.131780.649901142.994900.639502.812001.81290K562PABPN1
KCMF1ENSG00000176407.131180.97080825.681400.516204.713403.73690K562PRPF8
KCMF1ENSG00000176407.13618.54320887.97680-0.521604.441003.25150K562PSIP1
KCMF1ENSG00000176407.133002.453702131.401800.494206.011904.81250K562PUF60
KCMF1ENSG00000176407.132820.357601520.696300.8910015.8921014.63120K562PUS1
KCMF1ENSG00000176407.132163.047901481.720500.545708.377107.37220K562RBM15
KCMF1ENSG00000176407.131412.10530841.121700.747408.165906.74670K562RPS19
KCMF1ENSG00000176407.131194.86510890.542000.424002.369501.37230K562SAFB
KCMF1ENSG00000176407.131238.22270920.732400.427303.588301.93140K562SDAD1
KCMF1ENSG00000176407.131270.69890965.372700.396402.580701.64370K562SF3B1
KCMF1ENSG00000176407.131300.21960955.182900.444805.091303.91170K562SF3B4
KCMF1ENSG00000176407.131913.175001200.472900.672302.821001.58120K562SNRNP200
KCMF1ENSG00000176407.131407.442001002.506700.489406.027804.80730K562SYNCRIP
KCMF1ENSG00000176407.131177.12200919.622700.356003.332102.45310K562U2AF2
KCMF1ENSG00000176407.132044.980701229.539500.7339022.3537020.30180K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCMF1 is not available on ENCORE database.





1 RBPs can affect the splicing of KCMF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKCMF1ENSG00000176407.13chr2+8524105885241176851982158519859085255011852551790.052000.000150.01099includedHepG2SFPQ

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KCMF1 is not avaliable on ENCORE database.