FOXRED1

General Information

Gene Name       : FOXRED1
Gene ID             : ENSG00000110074.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: FOXRED1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FOXRED1ENSG00000110074.1021.9929.6425.81ENCSR000AEF
HepG2FOXRED1ENSG00000110074.1048.2836.2542.27ENCSR985KAT
K562FOXRED1ENSG00000110074.1052.9854.0253.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FOXRED1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FOXRED1 RNA is bound by 41 proteins.  







eCLIP assay for FOXRED1 is not avaliable on ENCORE database.





41 proteins are bound to FOXRED1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11126145976126146074+3'-UTR,CDS3.670814.40383K562UCHL5
chr11126146294126146347+3'-UTR,CDS6.1230414.87993HepG2CSTF2T
chr11126146297126146353+3'-UTR,CDS4.301714.55101HepG2PRPF4
chr11126147802126147875+3'-UTR3.418326.82132K562YBX3
chr11126145959126146155+3'-UTR,CDS,intron-Proximal4.007634.06501K562GRWD1
chr11126146006126146140+3'-UTR,CDS,intron-Proximal3.069187.28674HepG2SRSF1
chr11126146416126146499+3'-UTR,CDS,intron-Proximal5.3839522.28338K562CSTF2T
chr11126146361126146406+3'-UTR,CDS3.414786.66905HepG2CSTF2T
chr11126146064126146122+3'-UTR,CDS,intron-Proximal3.107784.51003HepG2PPIG
chr11126147541126147580+3'-UTR,CDS4.121204.72754K562YBX3
chr11126147780126147883+3'-UTR3.488433.50122K562DDX55
chr11126146849126146971+3'-UTR,CDS,intron-Distal,intron-Proximal4.005999.93860K562EWSR1
chr11126146300126146347+3'-UTR,CDS3.8655912.05335K562CSTF2T
chr11126146210126146293+3'-UTR,CDS,intron-Proximal5.3259714.33214HepG2DKC1
chr11126145961126146138+3'-UTR,CDS,intron-Proximal5.381409.16645K562SRSF1
chr11126146205126146296+3'-UTR,CDS,intron-Proximal6.6734945.30725K562GTF2F1
chr11126145218126145266+3'-UTR,CDS,intron-Distal,intron-Proximal3.385485.58370HepG2PPIG
chr11126146321126146352+3'-UTR,CDS5.0987915.56474K562FAM120A
chr11126146212126146292+3'-UTR,CDS,intron-Proximal4.520119.89875K562PRPF8
chr11126146210126146297+3'-UTR,CDS,intron-Proximal8.23307100.95279K562FAM120A
chr11126146352126146397+3'-UTR,CDS4.1941514.29950K562FAM120A
chr11126147501126147541+3'-UTR,CDS3.737853.02250K562YBX3
chr11126145953126146041+3'-UTR,CDS,intron-Proximal3.390167.63733HepG2PPIG
chr11126146202126146294+3'-UTR,CDS,intron-Proximal8.0075349.50488K562EWSR1
chr11126145673126145722+3'-UTR,CDS,intron-Proximal3.220673.42396HepG2U2AF2
chr11126147005126147070+3'-UTR,CDS4.966165.56813HepG2PPIG
chr11126146208126146300+3'-UTR,CDS,intron-Proximal7.46334101.79729K562CSTF2T
chr11126146296126146360+3'-UTR,CDS3.9468611.59672K562GTF2F1
chr11126145731126145806+3'-UTR,CDS,intron-Proximal3.658657.07647K562PRPF8
chr11126146205126146291+3'-UTR,CDS,intron-Proximal4.659953.95187HepG2AQR
chr11126147311126147366+3'-UTR,CDS,intron-Proximal3.503686.22359HepG2BUD13
chr11126145964126146127+3'-UTR,CDS,intron-Proximal3.784055.87630HepG2SRSF9
chr11126145685126145751+3'-UTR,CDS,intron-Proximal3.175934.06531HepG2GRWD1
chr11126146957126147004+3'-UTR,CDS,intron-Proximal5.148529.12746K562FAM120A
chr11126147785126147864+3'-UTR3.333304.25221HepG2LSM11
chr11126146294126146333+3'-UTR,CDS3.820017.21677K562EWSR1
chr11126146391126146429+3'-UTR,CDS,intron-Proximal4.179957.47736K562EWSR1
chr11126147580126147636+3'-UTR,CDS3.531005.73361K562YBX3
chr11126145954126146140+3'-UTR,CDS,intron-Proximal3.8997210.28998HepG2GRWD1
chr11126144877126144919+3'-UTR,CDS,intron-Distal,intron-Proximal3.173683.99124HepG2PPIG
chr11126145651126145746+3'-UTR,CDS,intron-Proximal3.771273.47293K562U2AF2
chr11126146301126146344+3'-UTR,CDS5.651447.83501HepG2FAM120A
chr11126146303126146336+3'-UTR,CDS5.004404.14689K562FTO
chr11126147650126147705+3'-UTR4.094973.67707K562METAP2
chr11126146372126146423+3'-UTR,CDS,intron-Proximal3.978893.25631HepG2PRPF4
chr11126145286126145324+3'-UTR,CDS,intron-Distal,intron-Proximal3.573673.05161HepG2PPIG
chr11126146953126146999+3'-UTR,CDS,intron-Proximal3.410417.52617K562CSTF2T
chr11126146363126146416+3'-UTR,CDS3.7274711.15631K562CSTF2T
chr11126147798126147872+3'-UTR3.184303.03634HepG2PABPN1
chr11126146397126146495+3'-UTR,CDS,intron-Proximal4.7706725.55027K562FAM120A
chr11126142863126142881+5'-UTR,CDS,intron-Distal,intron-Proximal3.966163.49332HepG2PPIG
chr11126142954126143024+5'-UTR,CDS,intron-Distal,intron-Proximal3.561917.85990HepG2PRPF8
chr11126142967126143064+5'-UTR,CDS,intron-Distal,intron-Proximal3.6864212.48765K562PRPF8
chr11126143180126143233+5'-UTR,CDS,intron-Distal,intron-Proximal4.703227.08280K562SF3B4
chr11126139057126139185+5'-UTR,CDS3.221156.22708K562DDX3X
chr11126139047126139199+5'-UTR,CDS,intron-Proximal3.886999.74704HepG2NCBP2
chr11126143274126143353+5'-UTR,CDS,intron-Distal,intron-Proximal3.647446.81103HepG2PPIG
chr11126143335126143401+5'-UTR,CDS,intron-Distal,intron-Proximal4.346737.46483HepG2PRPF8
chr11126141320126141444+CDS,intron-Distal,intron-Proximal4.278928.83457HepG2GRWD1
chr11126141365126141432+CDS,intron-Distal3.166465.12722K562BUD13
chr11126141348126141438+CDS,intron-Distal4.5165911.59798HepG2PPIG
chr11126146844126146957+intron-Distal,intron-Proximal6.0872920.31622K562FAM120A
chr11126142975126143032+intron-Distal,intron-Proximal4.442345.97994K562AQR
chr11126140379126140427+intron-Distal3.880703.29197K562HNRNPM
chr11126143178126143227+intron-Distal,intron-Proximal3.419623.18246K562PRPF8
chr11126143065126143150+intron-Distal,intron-Proximal3.552697.03098HepG2EFTUD2
chr11126143004126143062+intron-Distal,intron-Proximal4.106608.86977HepG2EFTUD2
chr11126145343126145408+intron-Distal,intron-Proximal4.185953.54514K562TIA1
chr11126146854126146910+intron-Distal,intron-Proximal5.7890915.60039K562CSTF2T
chr11126140379126140422+intron-Distal4.583887.94355HepG2HNRNPM
chr11126140256126140373+intron-Distal3.657443.45133K562HNRNPU
chr11126146208126146282+intron-Proximal4.112813.52365K562FUS
chr11126147111126147148+intron-Proximal4.120788.35027K562FAM120A
chr11126146419126146471+intron-Proximal4.8724714.31362HepG2CSTF2T
chr11126146204126146276+intron-Proximal4.4963719.81906HepG2PRPF8
chr11126146220126146261+intron-Proximal5.502245.04377K562DDX21
chr11126147109126147154+intron-Proximal4.737126.64314K562CSTF2T
chr11126146212126146279+intron-Proximal6.2080517.26543HepG2GTF2F1
chr11126146202126146285+intron-Proximal5.5153511.27050HepG2PRPF4
chr11126146910126146953+intron-Proximal4.0507812.14434K562CSTF2T
chr11126146207126146271+intron-Proximal4.656255.59066HepG2IGF2BP1
chr11126146208126146262+intron-Proximal4.411314.80622K562AATF
chr11126146210126146269+intron-Proximal5.710066.79054HepG2PCBP2
chr11126146211126146276+intron-Proximal3.582213.99870K562IGF2BP1
chr11126146217126146286+intron-Proximal4.530844.00049HepG2CDC40
chr11126146207126146268+intron-Proximal8.5827147.86945K562FASTKD2
chr11126146203126146289+intron-Proximal7.9255334.16432K562FTO
chr11126146211126146277+intron-Proximal4.660475.17992K562APOBEC3C
chr11126146214126146272+intron-Proximal5.335645.60708K562DDX52
chr11126146212126146285+intron-Proximal5.4902429.23907K562AKAP8L
chr11126146207126146268+intron-Proximal4.532623.42967K562SLTM
chr11126146202126146280+intron-Proximal8.1978371.31370HepG2CSTF2T
chr11126146201126146286+intron-Proximal8.24974142.45398HepG2FAM120A
chr11126146213126146286+intron-Proximal4.882595.94830K562TIA1
chr11126146203126146273+intron-Proximal4.8879214.53487HepG2RBFOX2
chr11126146203126146285+intron-Proximal5.8790712.64559K562RBFOX2
chr11126146200126146284+intron-Proximal7.8263627.93997K562EIF4G2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FOXRED1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FOXRED1 is not available on ENCORE database.

  • 80 RBPs can affect the levels of FOXRED1.  








The Knockdown/knockout RNA-Seq assay for FOXRED1 is not available on ENCORE database.





80 RBPs can affect the gene expression of FOXRED1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FOXRED1ENSG00000110074.6575.09040716.44300-0.317102.783102.17380HepG2ACO1
FOXRED1ENSG00000110074.6958.936801179.80770-0.299002.855402.16000HepG2AUH
FOXRED1ENSG00000110074.6470.45880655.15880-0.477802.553901.68900HepG2BCLAF1
FOXRED1ENSG00000110074.6323.12520431.67400-0.417802.404501.68180HepG2CALR
FOXRED1ENSG00000110074.6559.68250716.21240-0.355803.480702.75010HepG2CKAP4
FOXRED1ENSG00000110074.6586.72070270.478101.117108.234706.93140HepG2CNOT7
FOXRED1ENSG00000110074.6251.45440384.61030-0.613103.721202.93660HepG2CPSF6
FOXRED1ENSG00000110074.6432.55320565.34140-0.386202.458001.41900HepG2CPSF7
FOXRED1ENSG00000110074.6468.70680604.83770-0.367902.368501.52850HepG2DDX24
FOXRED1ENSG00000110074.6531.45430741.54200-0.480602.045501.37060HepG2DDX55
FOXRED1ENSG00000110074.6231.23490436.75850-0.917504.796403.52240HepG2DDX59
FOXRED1ENSG00000110074.6355.74780540.06000-0.602303.592702.89580HepG2DDX6
FOXRED1ENSG00000110074.6350.93270569.16540-0.697704.672903.22830HepG2AGO1
FOXRED1ENSG00000110074.6798.693101017.20020-0.348902.071301.35880HepG2EIF4G2
FOXRED1ENSG00000110074.61095.206801354.56110-0.306603.510202.84560HepG2ETF1
FOXRED1ENSG00000110074.6505.39200700.02640-0.470003.875802.88730HepG2EWSR1
FOXRED1ENSG00000110074.6872.65630578.869700.592104.846703.94750HepG2FXR1
FOXRED1ENSG00000110074.6365.19940250.394200.544402.344501.31840HepG2GRSF1
FOXRED1ENSG00000110074.6562.51830683.95260-0.282002.248301.36220HepG2HDGF
FOXRED1ENSG00000110074.6755.44720989.14440-0.388902.352301.48250HepG2HNRNPA2B1
FOXRED1ENSG00000110074.6624.73920786.46040-0.332103.247202.47560HepG2HNRNPF
FOXRED1ENSG00000110074.6852.97870543.871300.649105.997904.99850HepG2HNRNPK
FOXRED1ENSG00000110074.6295.59850416.03180-0.493102.617602.00220HepG2HNRNPLL
FOXRED1ENSG00000110074.6453.61510578.47580-0.350803.189002.40740HepG2ILF2
FOXRED1ENSG00000110074.6833.01880579.072500.524503.751002.98690HepG2MAGOH
FOXRED1ENSG00000110074.6821.62440582.284600.496703.136502.46840HepG2MATR3
FOXRED1ENSG00000110074.6387.56290568.25520-0.552102.589301.58260HepG2PCBP2
FOXRED1ENSG00000110074.6396.89110550.70660-0.472503.466102.61010HepG2PRPF4
FOXRED1ENSG00000110074.6304.58480571.67960-0.908405.882204.75160HepG2PRPF8
FOXRED1ENSG00000110074.6719.72980579.031200.313702.471801.95020HepG2PTBP1
FOXRED1ENSG00000110074.6702.702101018.74940-0.535805.081904.30410HepG2PUF60
FOXRED1ENSG00000110074.6699.711201080.68250-0.627107.061606.00920HepG2PUM2
FOXRED1ENSG00000110074.6790.39630627.047100.333902.570001.96400HepG2QKI
FOXRED1ENSG00000110074.6304.65850548.16690-0.847404.452103.56910HepG2RAVER1
FOXRED1ENSG00000110074.6482.60940667.74100-0.468404.012603.00260HepG2RBM15
FOXRED1ENSG00000110074.6705.360601132.16580-0.6827010.658609.78710HepG2RBM22
FOXRED1ENSG00000110074.6368.29880569.10740-0.627805.324504.41840HepG2RBM25
FOXRED1ENSG00000110074.6774.06550644.383500.264401.941701.47060HepG2NELFE
FOXRED1ENSG00000110074.6747.14480600.196600.315902.605002.00450HepG2RECQL
FOXRED1ENSG00000110074.6474.19590847.31710-0.8374010.502709.32040HepG2RPLP0
FOXRED1ENSG00000110074.6348.94920538.85510-0.626902.776001.83040HepG2RPS10
FOXRED1ENSG00000110074.6294.26030565.47410-0.942406.425305.28200HepG2RRP9
FOXRED1ENSG00000110074.6277.76030411.76430-0.568003.470802.68960HepG2SF3B1
FOXRED1ENSG00000110074.6775.69250976.95760-0.332803.160402.41830HepG2SLBP
FOXRED1ENSG00000110074.6488.846701278.74550-1.3873046.9633045.56020HepG2SRFBP1
FOXRED1ENSG00000110074.6837.17650629.209900.411904.286403.72930HepG2SRSF1
FOXRED1ENSG00000110074.6815.706801005.94590-0.302402.411901.82280HepG2SRSF5
FOXRED1ENSG00000110074.6642.35910772.69600-0.266502.338301.69440HepG2SRSF7
FOXRED1ENSG00000110074.6293.92410512.33300-0.801603.931902.48680HepG2SUB1
FOXRED1ENSG00000110074.6335.81430468.06720-0.479103.200602.19440HepG2SUPT6H
FOXRED1ENSG00000110074.6413.94030738.08920-0.834404.571003.73390HepG2SUPV3L1
FOXRED1ENSG00000110074.6291.08830405.61720-0.478702.399201.71720HepG2TARDBP
FOXRED1ENSG00000110074.6301.19850494.65170-0.715704.148702.95950HepG2TFIP11
FOXRED1ENSG00000110074.6449.33270550.26150-0.292301.722801.30830HepG2TIAL1
FOXRED1ENSG00000110074.6362.15500593.01210-0.711505.796404.90420HepG2U2AF1
FOXRED1ENSG00000110074.6512.80610623.66610-0.282401.982601.37540HepG2UPF1
FOXRED1ENSG00000110074.6374.67750543.49490-0.536605.492204.59750HepG2ZC3H8
FOXRED1ENSG00000110074.6577.88900685.91270-0.247201.932901.45350HepG2ZNF622
FOXRED1ENSG00000110074.61257.246301532.82830-0.285903.233702.62890K562AGGF1
FOXRED1ENSG00000110074.61865.217602338.58370-0.326302.661302.08330K562AQR
FOXRED1ENSG00000110074.61208.653101421.49030-0.234002.467101.56380K562BCLAF1
FOXRED1ENSG00000110074.6456.62440604.47390-0.404702.262901.47980K562BOP1
FOXRED1ENSG00000110074.6538.73880834.77010-0.631805.763104.09760K562CCAR1
FOXRED1ENSG00000110074.61514.130601831.84990-0.274802.499401.39050K562CCDC124
FOXRED1ENSG00000110074.6468.41350642.70670-0.456403.345302.48100K562CPSF6
FOXRED1ENSG00000110074.6854.017601078.41230-0.336602.920101.83420K562CSTF2
FOXRED1ENSG00000110074.62754.509803301.20840-0.261202.602701.65740K562CELF1
FOXRED1ENSG00000110074.61395.201701798.42630-0.366303.104101.54380K562DDX19B
FOXRED1ENSG00000110074.6686.26250934.51410-0.445503.302901.83910K562DHX30
FOXRED1ENSG00000110074.61498.571601896.17840-0.339504.441303.55730K562EIF2S2
FOXRED1ENSG00000110074.61296.976201055.478300.297202.109201.38790K562EIF4A3
FOXRED1ENSG00000110074.62316.721602684.36140-0.212502.559501.65170K562EIF4G2
FOXRED1ENSG00000110074.6548.13420894.82860-0.707106.696804.81140K562FKBP4
FOXRED1ENSG00000110074.6423.32770653.98230-0.627505.188204.01140K562FMR1
FOXRED1ENSG00000110074.6281.16330714.94870-1.3464015.1160013.16170K562G3BP2
FOXRED1ENSG00000110074.61975.931002526.71240-0.354703.734602.86090K562GRSF1
FOXRED1ENSG00000110074.61523.961601885.44260-0.307103.370102.38640K562HNRNPU
FOXRED1ENSG00000110074.6602.07560842.85450-0.485303.657901.95310K562KHDRBS1
FOXRED1ENSG00000110074.6269.60170523.99250-0.958707.043705.48420K562KRR1
FOXRED1ENSG00000110074.61182.035501484.96460-0.329205.190204.21350K562NSUN2
FOXRED1ENSG00000110074.6854.405201145.50040-0.423003.157202.35580K562PRPF8
FOXRED1ENSG00000110074.62313.905002928.76400-0.340003.307102.41650K562PUF60
FOXRED1ENSG00000110074.62331.938603052.25700-0.388306.842805.31200K562PUM2
FOXRED1ENSG00000110074.61137.461601581.84830-0.475804.268003.61540K562PUS1
FOXRED1ENSG00000110074.61307.374201541.20700-0.237402.028501.50620K562RBM15
FOXRED1ENSG00000110074.6508.82020678.36280-0.414902.977501.58900K562RBM25
FOXRED1ENSG00000110074.6844.797001171.24970-0.471402.757401.43330K562RRP9
FOXRED1ENSG00000110074.6426.84670583.62920-0.451302.457001.54410K562SF3B1
FOXRED1ENSG00000110074.61053.53680743.639200.502505.821204.54950K562SF3B4
FOXRED1ENSG00000110074.6612.96580919.43440-0.584905.490203.68380K562SLBP
FOXRED1ENSG00000110074.6996.121501251.55810-0.329302.878601.32600K562SRSF9
FOXRED1ENSG00000110074.6800.830101109.13000-0.469903.349602.22240K562SUPV3L1
FOXRED1ENSG00000110074.6550.40880715.90960-0.379302.896802.07530K562U2AF2
FOXRED1ENSG00000110074.61718.406602634.57120-0.616509.183607.48950K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FOXRED1 is not available on ENCORE database.





9 RBPs can affect the splicing of FOXRED1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFOXRED1ENSG00000110074.6chr11+126144821126144916126143230126143349126145221126145323-0.171000.000150.01425excludedHepG2RBM22
SEFOXRED1ENSG00000110074.6chr11+126144821126144916126143230126143349126145221126145323-0.290000.002180.02708excludedHepG2U2AF2
SEFOXRED1ENSG00000110074.6chr11+126141331126141552126139027126139186126142863126142974-0.067000.000980.01197excludedK562AQR
SEFOXRED1ENSG00000110074.6chr11+126144821126144916126143230126143349126145221126145323-0.121000.000020.00045excludedK562AQR
SEFOXRED1ENSG00000110074.6chr11+126144821126144916126143230126143349126145221126145323-0.147000.005180.08354excludedK562U2AF1
SEFOXRED1ENSG00000110074.6chr11+126144821126144916126143230126143349126145221126145323-0.214000.000470.01066excludedK562U2AF2
SEFOXRED1ENSG00000110074.6chr11+126141331126141552126139027126139186126142863126142974-0.189000.002220.07131excludedHepG2HNRNPC
SEFOXRED1ENSG00000110074.6chr11+126141331126141552126139027126139186126142863126142974-0.304000.000000.00000excludedK562HNRNPC
A5SSFOXRED1ENSG00000110074.6chr11+1261428631261430521261428631261429741261432301261433490.155000.000090.00793longerK562U2AF2
MXEFOXRED1ENSG00000110074.6chr11+1261448211261449161261452211261453231261432301261433491261456881261457650.326000.001290.027151includedHepG2FTO
MXEFOXRED1ENSG00000110074.6chr11+126144825126144916126145221126145323126143230126143349126145688126145765-0.121000.003460.082822includedK562PTBP1
MXEFOXRED1ENSG00000110074.6chr11+126144821126144916126145221126145323126143230126143349126145688126145765-0.158000.002840.077672includedK562LIN28B
MXEFOXRED1ENSG00000110074.6chr11+126144821126144916126145221126145316126143230126143349126145688126145765-0.090000.000120.001452includedK562AQR
MXEFOXRED1ENSG00000110074.6chr11+126144821126144916126145221126145323126143230126143349126145688126145765-0.200000.000180.009512includedHepG2XRN2
MXEFOXRED1ENSG00000110074.6chr11+126144825126144916126145221126145323126143230126143349126145688126145765-0.090000.003270.070202includedHepG2XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FOXRED1 is not avaliable on ENCORE database.