CTB-89H12.4

General Information

Gene Name       : CTB-89H12.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTB-89H12.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTB-89H12.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTB-89H12.4 RNA is bound by 21 proteins.  







eCLIP assay for CTB-89H12.4 is not avaliable on ENCORE database.





21 proteins are bound to CTB-89H12.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5148873985148874015-3'-UTR,intron-Distal3.532465.21454K562TIA1
chr5148882039148882183-intron-Distal3.524353.84715HepG2HNRNPK
chr5148876062148876109-3'-UTR,intron-Distal,intron-Proximal3.261469.37921K562LIN28B
chr5148875047148875160-3'-UTR,intron-Distal,intron-Proximal3.7099329.33267K562FAM120A
chr5148880617148880694-3'-UTR,intron-Distal3.8080111.15155K562RBM15
chr5148874999148875009-3'-UTR,intron-Distal3.723195.75623K562FAM120A
chr5148875188148875205-3'-UTR,intron-Distal4.804665.94928K562UPF1
chr5148876200148876274-3'-UTR,intron-Distal3.153126.34653K562PUM2
chr5148875264148875297-3'-UTR,intron-Distal3.208153.08064HepG2TIA1
chr5148880585148880640-3'-UTR,intron-Distal3.380004.37145K562GRWD1
chr5148874206148874304-3'-UTR,intron-Distal5.1375918.70721K562IGF2BP1
chr5148875280148875312-3'-UTR,intron-Distal4.2103415.35454K562HNRNPC
chr5148873131148873191-3'-UTR,intron-Distal3.782666.58004HepG2U2AF2
chr5148878682148878741-3'-UTR,intron-Distal,intron-Proximal3.274864.74886HepG2BCLAF1
chr5148880558148880692-3'-UTR,intron-Distal,intron-Proximal3.481784.03783HepG2TRA2A
chr5148881405148881490-intron-Distal3.107268.74676HepG2HNRNPL
chr5148875273148875280-3'-UTR,intron-Distal3.7175314.43338K562HNRNPC
chr5148880942148881003-intron-Distal3.0906213.14163K562RBM15
chr5148878595148878693-intron-Distal,intron-Proximal4.349314.10309HepG2RBM15
chr5148875294148875310-3'-UTR,intron-Distal3.3228615.86796K562UPF1
chr5148884266148884329-intron-Distal,intron-Proximal3.271344.07077HepG2HNRNPC
chr5148875887148875925-3'-UTR,intron-Distal3.6207614.90763K562YBX3
chr5148882793148882950-intron-Distal3.6732015.98297HepG2HNRNPL
chr5148874346148874402-3'-UTR,intron-Distal3.419769.54755HepG2FUBP3
chr5148873947148874022-3'-UTR,intron-Distal4.289474.05830HepG2TIA1
chr5148876209148876256-3'-UTR,intron-Distal3.302723.07411K562LIN28B
chr5148875265148875273-3'-UTR,intron-Distal3.9401913.22857K562HNRNPC
chr5148881529148881588-intron-Distal3.252263.77546HepG2HNRNPL
chr5148874578148874625-3'-UTR,intron-Distal3.3328612.44492K562FAM120A
chr5148876760148876796-intron-Distal3.685109.41898K562KHSRP
chr5148876718148876760-intron-Distal4.955848.36768K562KHSRP
chr5148880640148880757-3'-UTR,CDS,intron-Distal3.153786.18430K562GRWD1
chr5148876346148876433-3'-UTR,CDS,intron-Distal,intron-Proximal4.239659.90110K562U2AF2
chr5148875292148875310-3'-UTR,intron-Distal3.266105.64974HepG2TIAL1
chr5148874254148874291-3'-UTR,intron-Distal3.368015.33443K562IGF2BP2
chr5148876340148876434-3'-UTR,CDS,intron-Distal,intron-Proximal4.1037517.88439HepG2U2AF2
chr5148882950148883102-intron-Distal3.5737316.89572HepG2HNRNPL
chr5148880533148880583-3'-UTR,intron-Distal,intron-Proximal4.419624.58968K562PRPF8
chr5148884147148884197-intron-Distal3.833595.03657K562PTBP1
chr5148874232148874287-3'-UTR,intron-Distal4.4295911.09317HepG2IGF2BP1
chr5148877078148877142-intron-Distal4.116987.43408HepG2KHSRP
chr5148875240148875311-3'-UTR,intron-Distal3.522075.98135HepG2UPF1
chr5148880542148880755-3'-UTR,CDS,intron-Distal,intron-Proximal3.2060813.01873HepG2GRWD1
chr5148876321148876430-3'-UTR,CDS,intron-Distal,intron-Proximal4.520294.66217K562GRWD1
chr5148876783148876860-intron-Distal3.314396.49241HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTB-89H12.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTB-89H12.4 is not available on ENCORE database.

  • 94 RBPs can affect the levels of CTB-89H12.4.  








The Knockdown/knockout RNA-Seq assay for CTB-89H12.4 is not available on ENCORE database.





94 RBPs can affect the gene expression of CTB-89H12.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTB-89H12.4ENSG00000230551.3548.19410767.13480-0.484802.804802.26980HepG2AKAP1
CTB-89H12.4ENSG00000230551.3673.99520523.855700.363502.173601.37480HepG2BCLAF1
CTB-89H12.4ENSG00000230551.3779.15670485.886700.681206.849905.95600HepG2BOP1
CTB-89H12.4ENSG00000230551.3831.87000546.345200.606406.750605.61660HepG2CALR
CTB-89H12.4ENSG00000230551.3812.78450446.082800.865509.871708.65140HepG2CPSF6
CTB-89H12.4ENSG00000230551.3650.48590422.627500.622004.436303.26910HepG2DDX24
CTB-89H12.4ENSG00000230551.3364.34170487.61300-0.420403.042402.30990HepG2DNAJC21
CTB-89H12.4ENSG00000230551.3466.87340670.68960-0.522602.960202.29840HepG2EIF4A3
CTB-89H12.4ENSG00000230551.3872.010101187.83710-0.445903.364802.47180HepG2EIF4G2
CTB-89H12.4ENSG00000230551.31701.065301217.382700.482608.756007.78880HepG2ETF1
CTB-89H12.4ENSG00000230551.3646.89160493.335200.390902.620801.38250HepG2FKBP4
CTB-89H12.4ENSG00000230551.3456.81380181.500101.3315010.911309.40030HepG2FUBP3
CTB-89H12.4ENSG00000230551.3860.18640627.699700.454502.995902.30520HepG2G3BP1
CTB-89H12.4ENSG00000230551.3327.92650492.28410-0.586103.998803.24310HepG2HNRNPA1
CTB-89H12.4ENSG00000230551.31398.501801155.167400.275702.212401.36710HepG2HNRNPA2B1
CTB-89H12.4ENSG00000230551.3303.82960547.56480-0.849807.852506.73210HepG2HNRNPC
CTB-89H12.4ENSG00000230551.3620.22130482.599100.361901.991501.44890HepG2HNRNPLL
CTB-89H12.4ENSG00000230551.3401.10660543.94540-0.439502.386401.82020HepG2HNRNPU
CTB-89H12.4ENSG00000230551.3530.82600676.84220-0.350601.870301.32620HepG2MAGOH
CTB-89H12.4ENSG00000230551.3607.01710381.957400.668203.929002.48020HepG2NAA15
CTB-89H12.4ENSG00000230551.3930.52900620.503600.584503.140202.37390HepG2PABPC4
CTB-89H12.4ENSG00000230551.3476.69630742.79850-0.639903.830801.72590HepG2PPIG
CTB-89H12.4ENSG00000230551.3373.20090485.15760-0.378502.591101.87640HepG2PPIL4
CTB-89H12.4ENSG00000230551.3813.51500457.360000.830708.871707.51450HepG2PRPF8
CTB-89H12.4ENSG00000230551.3812.979501189.83320-0.549503.625002.95440HepG2PUF60
CTB-89H12.4ENSG00000230551.3848.929101262.96070-0.573103.389502.74690HepG2PUM1
CTB-89H12.4ENSG00000230551.31155.27490525.520401.1363024.7306023.12230HepG2QKI
CTB-89H12.4ENSG00000230551.3800.76670483.284600.728403.241102.48130HepG2RAVER1
CTB-89H12.4ENSG00000230551.31628.622701017.516600.6785013.3486012.38050HepG2RBM22
CTB-89H12.4ENSG00000230551.31113.46040476.968801.2230024.8096022.91140HepG2RBM25
CTB-89H12.4ENSG00000230551.3707.06010540.061500.388603.398202.81120HepG2NELFE
CTB-89H12.4ENSG00000230551.3698.80530503.041200.474104.834704.04970HepG2RECQL
CTB-89H12.4ENSG00000230551.3775.02340452.441000.776406.948205.76610HepG2RRP9
CTB-89H12.4ENSG00000230551.3389.41620484.41340-0.314902.118101.54140HepG2SAFB2
CTB-89H12.4ENSG00000230551.31275.10970673.431700.920908.669407.42130HepG2SF3A3
CTB-89H12.4ENSG00000230551.3632.03690477.697400.403802.388401.73110HepG2SF3B1
CTB-89H12.4ENSG00000230551.31041.72860505.199301.044006.414805.57570HepG2SF3B4
CTB-89H12.4ENSG00000230551.3841.576501140.65970-0.438702.304301.65450HepG2SLBP
CTB-89H12.4ENSG00000230551.3419.20070564.91810-0.430403.994203.24370HepG2SMN1
CTB-89H12.4ENSG00000230551.31850.883201149.265100.6874011.7433010.90210HepG2SRFBP1
CTB-89H12.4ENSG00000230551.31250.74360527.341601.2459026.6443025.50590HepG2SRSF1
CTB-89H12.4ENSG00000230551.3818.093801174.66740-0.521902.828602.19590HepG2SRSF5
CTB-89H12.4ENSG00000230551.31069.98920429.040301.3183031.6843030.21550HepG2SRSF9
CTB-89H12.4ENSG00000230551.3613.74820375.392900.709104.131202.64600HepG2STAU1
CTB-89H12.4ENSG00000230551.3648.51020451.600300.522002.427701.30470HepG2SUB1
CTB-89H12.4ENSG00000230551.31008.495101336.02280-0.405703.079402.43010HepG2SUCLG1
CTB-89H12.4ENSG00000230551.31156.47140474.058901.2865033.8459032.16500HepG2TAF15
CTB-89H12.4ENSG00000230551.31138.79680435.528001.386603.083802.20620HepG2TIA1
CTB-89H12.4ENSG00000230551.3970.941101162.25370-0.259502.074801.32800HepG2TUFM
CTB-89H12.4ENSG00000230551.3951.738601230.12010-0.370202.021701.31190HepG2UBE2L3
CTB-89H12.4ENSG00000230551.3715.77940474.978700.591603.138401.78800HepG2XRCC5
CTB-89H12.4ENSG00000230551.3425.13510580.81690-0.450202.062601.42820HepG2XRN2
CTB-89H12.4ENSG00000230551.3556.72540405.370800.457604.148203.35060HepG2ZC3H8
CTB-89H12.4ENSG00000230551.3905.74690656.840300.463503.896103.27680HepG2ZNF622
CTB-89H12.4ENSG00000230551.3854.75710482.576100.824704.558002.86230HepG2ZRANB2
CTB-89H12.4ENSG00000230551.3989.989301399.47100-0.499404.911503.18400K562APOBEC3C
CTB-89H12.4ENSG00000230551.33818.575201711.525301.1577028.5152026.83020K562AQR
CTB-89H12.4ENSG00000230551.3892.78520682.754100.386802.516301.68600K562BOP1
CTB-89H12.4ENSG00000230551.31237.54500754.311400.714107.434705.07290K562BUD13
CTB-89H12.4ENSG00000230551.31402.809301755.02110-0.323202.991801.75720K562CCDC124
CTB-89H12.4ENSG00000230551.31191.981601442.65240-0.275402.335201.32670K562CPEB4
CTB-89H12.4ENSG00000230551.32488.757401950.394900.351603.758302.61580K562CELF1
CTB-89H12.4ENSG00000230551.31136.035601723.06930-0.601003.620201.93630K562DDX19B
CTB-89H12.4ENSG00000230551.3914.271901492.64380-0.7072015.3659013.94190K562DDX47
CTB-89H12.4ENSG00000230551.3906.752401285.05310-0.503002.794301.47810K562DDX6
CTB-89H12.4ENSG00000230551.3861.061201392.38220-0.693404.307102.77330K562EIF2S1
CTB-89H12.4ENSG00000230551.3553.42480886.78280-0.680202.035701.34470K562EIF3G
CTB-89H12.4ENSG00000230551.3611.857301324.22980-1.113907.835106.45440K562EIF4A3
CTB-89H12.4ENSG00000230551.3742.917801192.62140-0.682904.183002.71350K562EIF4B
CTB-89H12.4ENSG00000230551.31289.007301586.05370-0.299203.268702.25030K562EIF4G2
CTB-89H12.4ENSG00000230551.3718.704901155.97100-0.685604.235502.59100K562EWSR1
CTB-89H12.4ENSG00000230551.3502.05900778.45760-0.632806.094604.80470K562FIP1L1
CTB-89H12.4ENSG00000230551.3746.33630525.454600.506203.570202.26730K562FKBP4
CTB-89H12.4ENSG00000230551.3561.41770738.69840-0.395902.533301.71520K562FMR1
CTB-89H12.4ENSG00000230551.31107.50450784.028400.498205.132703.23680K562FUS
CTB-89H12.4ENSG00000230551.3657.115701377.15770-1.067508.133507.16480K562FXR1
CTB-89H12.4ENSG00000230551.3374.31980605.34850-0.693506.320405.45390K562HNRNPC
CTB-89H12.4ENSG00000230551.3824.567501348.98400-0.7102010.305408.16020K562HNRNPL
CTB-89H12.4ENSG00000230551.3382.29090640.30920-0.744105.938204.50680K562HNRNPM
CTB-89H12.4ENSG00000230551.3755.430601055.39980-0.482404.064603.10630K562HSPD1
CTB-89H12.4ENSG00000230551.3493.05150335.724300.554403.613201.89540K562ILF3
CTB-89H12.4ENSG00000230551.3868.299401694.81070-0.964903.143502.24600K562MAGOH
CTB-89H12.4ENSG00000230551.31035.329501691.62120-0.708302.281601.45070K562MATR3
CTB-89H12.4ENSG00000230551.3492.77120676.48750-0.457103.524402.52920K562METAP2
CTB-89H12.4ENSG00000230551.3820.335001322.20770-0.688702.527301.35550K562NCBP2
CTB-89H12.4ENSG00000230551.3662.09590883.72750-0.416603.013802.15380K562PPIG
CTB-89H12.4ENSG00000230551.3702.989601646.49250-1.227804.656503.81730K562PTBP1
CTB-89H12.4ENSG00000230551.31210.894201730.47500-0.515105.429904.28860K562PUF60
CTB-89H12.4ENSG00000230551.31958.587601515.432800.370002.996302.43570K562PUS1
CTB-89H12.4ENSG00000230551.31207.93030911.568800.406003.753101.87450K562RBM17
CTB-89H12.4ENSG00000230551.3898.451601195.60280-0.412203.675101.69530K562RECQL
CTB-89H12.4ENSG00000230551.3624.657101168.80880-0.903905.405503.94060K562RPS3
CTB-89H12.4ENSG00000230551.31487.47890883.575500.7513015.8273014.00470K562SF3A3
CTB-89H12.4ENSG00000230551.3893.55410659.243200.438602.733901.76590K562SF3B1
CTB-89H12.4ENSG00000230551.3482.65710353.952600.447302.603501.38080K562SLBP
CTB-89H12.4ENSG00000230551.31122.70250905.242800.310503.514302.47560K562SRPK2
CTB-89H12.4ENSG00000230551.3683.678101128.60350-0.723103.744902.49190K562SRSF4
CTB-89H12.4ENSG00000230551.3713.07830914.75460-0.359302.687101.43270K562SSB
CTB-89H12.4ENSG00000230551.31381.755101021.361100.435903.772702.16450K562SSRP1
CTB-89H12.4ENSG00000230551.31423.79530934.151000.607906.121104.18750K562STAU1
CTB-89H12.4ENSG00000230551.3369.57830675.93640-0.8710011.183209.53950K562SYNCRIP
CTB-89H12.4ENSG00000230551.3951.043501633.79610-0.780602.651401.95680K562TARDBP
CTB-89H12.4ENSG00000230551.3938.635001545.46700-0.719402.363701.37080K562TRA2A
CTB-89H12.4ENSG00000230551.3705.12750891.59220-0.338502.764801.49730K562TROVE2
CTB-89H12.4ENSG00000230551.31588.428701178.775400.430205.141604.05190K562U2AF2
CTB-89H12.4ENSG00000230551.31514.98170812.415900.898905.733904.45190K562WDR3
CTB-89H12.4ENSG00000230551.31141.68120844.822200.434306.409905.17310K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTB-89H12.4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTB-89H12.4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTB-89H12.4 is not avaliable on ENCORE database.