COL16A1

General Information

Gene Name       : COL16A1
Gene ID             : ENSG00000084636.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COL16A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COL16A1ENSG00000084636.170.410.270.34ENCSR000AEF
HepG2COL16A1ENSG00000084636.1718.086.8912.48ENCSR985KAT
K562COL16A1ENSG00000084636.170.010.000.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COL16A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COL16A1 RNA is bound by 4 proteins.  







eCLIP assay for COL16A1 is not avaliable on ENCORE database.





4 proteins are bound to COL16A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13212727832127304-CDS,intron-Distal5.045373.79199HepG2PPIG
chr13212091232121036-CDS,intron-Distal,intron-Proximal4.349514.04268HepG2LSM11
chr13215704532157106-CDS,intron-Distal,intron-Proximal4.639056.64430HepG2PPIG
chr13214566432145700-CDS,intron-Distal4.292204.96634HepG2PPIG
chr13213078432130834-CDS,intron-Distal4.205185.58370HepG2PPIG
chr13211920132119241-CDS,intron-Distal,intron-Proximal4.351303.19682HepG2PABPN1
chr13212101432121076-CDS,intron-Distal4.670854.68902HepG2PPIG
chr13211919732119239-CDS,intron-Distal,intron-Proximal3.266553.51117HepG2LSM11
chr13213118332131216-CDS,intron-Distal,intron-Proximal3.914243.99124HepG2PPIG
chr13212412332124179-CDS,intron-Distal,intron-Proximal4.021823.19682HepG2PABPN1
chr13211837732118451-CDS,intron-Distal3.644364.25147HepG2LSM11
chr13211835532118416-CDS,intron-Distal4.397863.46058HepG2PABPN1
chr13211956932119637-CDS,intron-Distal3.467984.52386HepG2PABPN1
chr13212094732121036-CDS,intron-Distal3.528124.52386HepG2PABPN1
chr13213834332138377-CDS,intron-Distal5.184863.49905HepG2PPIG
chr13215760532157666-CDS,intron-Distal,intron-Proximal5.045375.80295HepG2PPIG
chr13215721732157244-CDS,intron-Distal,intron-Proximal5.714376.46301HepG2PPIG
chr13212793432127984-CDS,intron-Distal,intron-Proximal5.393964.97342HepG2PPIG
chr13212451432124565-CDS,intron-Distal,intron-Proximal4.351303.99014HepG2PABPN1
chr13215019332150227-CDS,intron-Distal4.015933.05161HepG2PPIG
chr13215125332151372-CDS,intron-Distal,intron-Proximal4.108868.46997HepG2PPIG
chr13216078932160822-CDS,intron-Distal3.786103.47879HepG2PPIG
chr13212701432127041-CDS,intron-Distal,intron-Proximal4.026863.59112HepG2PPIG
chr13214564232145664-CDS,intron-Distal,intron-Proximal5.335935.86613HepG2PPIG
chr13212619432126239-CDS,intron-Distal4.031883.72506HepG2PABPN1
chr13213590732135991-intron-Distal5.201829.51434HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COL16A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COL16A1 is not available on ENCORE database.

  • 105 RBPs can affect the levels of COL16A1.  








The Knockdown/knockout RNA-Seq assay for COL16A1 is not available on ENCORE database.





105 RBPs can affect the gene expression of COL16A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COL16A1ENSG00000084636.1377.77230321.80370-2.048908.306106.56460HepG2AATF
COL16A1ENSG00000084636.131024.78190514.164400.994908.920707.37760HepG2ABCF1
COL16A1ENSG00000084636.13394.91460546.54380-0.468804.421703.68820HepG2ACO1
COL16A1ENSG00000084636.131113.25300227.404202.2914013.1445011.20610HepG2ADAR
COL16A1ENSG00000084636.1343.34770431.10400-3.3140013.9923012.89200HepG2AKAP1
COL16A1ENSG00000084636.13173.52750311.46200-0.843904.938403.56040HepG2AKAP8
COL16A1ENSG00000084636.131051.64970549.104700.9374020.5520018.74510HepG2AKAP8L
COL16A1ENSG00000084636.13674.25060356.660700.918605.852304.73250HepG2ASCC1
COL16A1ENSG00000084636.13173.74050586.29510-1.7547010.096208.92120HepG2AUH
COL16A1ENSG00000084636.13590.46070375.475500.653002.254701.41350HepG2BCCIP
COL16A1ENSG00000084636.13197.29340402.24620-1.027709.072708.06700HepG2BOP1
COL16A1ENSG00000084636.13743.83600385.007200.9500011.649109.30760HepG2BUD13
COL16A1ENSG00000084636.13113.86750374.60820-1.7180020.7336018.98830HepG2CALR
COL16A1ENSG00000084636.13861.76630629.796200.452302.497701.57870HepG2CCAR1
COL16A1ENSG00000084636.131314.48880338.865701.9556023.1892021.23920HepG2CIRBP
COL16A1ENSG00000084636.13393.49870546.41670-0.473604.584203.76970HepG2CKAP4
COL16A1ENSG00000084636.1317.37440207.20910-3.576007.111205.88880HepG2CNOT7
COL16A1ENSG00000084636.13143.29490369.27030-1.3657013.0480011.67650HepG2CPSF6
COL16A1ENSG00000084636.13767.95780231.809501.7280021.8327019.38640HepG2CSTF2
COL16A1ENSG00000084636.13350.89330439.14730-0.323702.109801.44960HepG2DAZAP1
COL16A1ENSG00000084636.131569.30060354.387902.1466067.5319064.97590HepG2DDX21
COL16A1ENSG00000084636.1387.33310279.53460-1.678406.553904.55020HepG2DDX28
COL16A1ENSG00000084636.13141.77120412.87560-1.542105.876504.99680HepG2DDX3X
COL16A1ENSG00000084636.13179.86660369.21370-1.037503.445702.59380HepG2DDX55
COL16A1ENSG00000084636.13229.04440419.33810-0.872504.310203.10560HepG2DDX59
COL16A1ENSG00000084636.13552.17610354.879200.637703.545602.85450HepG2DDX6
COL16A1ENSG00000084636.132960.67380522.892202.50120185.22760182.37510HepG2DKC1
COL16A1ENSG00000084636.13558.69270340.945000.712405.014204.22860HepG2EIF2S1
COL16A1ENSG00000084636.13641.12040389.833400.717603.566702.23740HepG2EIF2S2
COL16A1ENSG00000084636.131181.35280335.026701.8180051.3698048.33090HepG2EIF3G
COL16A1ENSG00000084636.13592.46900376.683200.653303.834903.08680HepG2EIF4A3
COL16A1ENSG00000084636.13647.27760366.947000.818703.777402.97970HepG2EIF4B
COL16A1ENSG00000084636.13634.79680433.274800.550902.168501.41190HepG2EIF4G1
COL16A1ENSG00000084636.13206.37940415.04430-1.008008.792507.37410HepG2EIF4G2
COL16A1ENSG00000084636.13101.43650338.00600-1.736506.788705.13960HepG2FASTKD2
COL16A1ENSG00000084636.13727.74530410.874200.824603.544101.65390HepG2FMR1
COL16A1ENSG00000084636.13490.91490345.050600.508603.368502.50510HepG2FUBP3
COL16A1ENSG00000084636.13534.39740380.363500.490402.211501.59010HepG2FXR1
COL16A1ENSG00000084636.13731.64870374.627400.965605.948604.63170HepG2G3BP2
COL16A1ENSG00000084636.13800.38180329.826101.278905.554404.28080HepG2GEMIN5
COL16A1ENSG00000084636.13754.34600418.559200.849702.140001.57330HepG2GPKOW
COL16A1ENSG00000084636.132318.93120231.176403.3263012.9870011.75720HepG2HNRNPA1
COL16A1ENSG00000084636.13152.27460403.60520-1.4063018.1676016.19500HepG2HNRNPA2B1
COL16A1ENSG00000084636.13565.11360357.498200.660502.486801.82260HepG2HNRNPK
COL16A1ENSG00000084636.13980.26240399.442101.2951020.1229018.66610HepG2HNRNPLL
COL16A1ENSG00000084636.13552.64080358.017800.626204.182703.03480HepG2HNRNPM
COL16A1ENSG00000084636.13367.02520255.442700.522803.763503.06720HepG2HNRNPU
COL16A1ENSG00000084636.13501.22060339.115000.563603.107301.79530HepG2HSPD1
COL16A1ENSG00000084636.131177.86030358.436301.7163013.9693012.58310HepG2IGF2BP2
COL16A1ENSG00000084636.13137.04240336.60760-1.296403.016801.98920HepG2IGF2BP3
COL16A1ENSG00000084636.13184.20300260.92590-0.502303.263302.47290HepG2ILF2
COL16A1ENSG00000084636.13656.22590197.789401.7301023.1465019.68130HepG2KHDRBS1
COL16A1ENSG00000084636.131491.87320360.632702.0484038.1604034.49060HepG2KHSRP
COL16A1ENSG00000084636.13664.28770499.604400.410904.265703.01220HepG2KIF1C
COL16A1ENSG00000084636.13199.55590338.85670-0.763904.017902.50420HepG2KRR1
COL16A1ENSG00000084636.13970.49680382.577501.3429018.0294016.53250HepG2MATR3
COL16A1ENSG00000084636.13163.75750387.66470-1.243203.660502.45650HepG2METAP2
COL16A1ENSG00000084636.13308.91520419.89750-0.442802.211501.48330HepG2MSI2
COL16A1ENSG00000084636.13256.77780407.46090-0.666102.928701.92850HepG2MTPAP
COL16A1ENSG00000084636.13506.12720352.649100.521203.074801.79240HepG2NAA15
COL16A1ENSG00000084636.13730.63830435.459400.746509.828408.42040HepG2NOL12
COL16A1ENSG00000084636.13216.81790131.878100.717202.868501.39200HepG2NOLC1
COL16A1ENSG00000084636.13676.63010339.252500.995905.037303.53560HepG2NONO
COL16A1ENSG00000084636.131019.05030354.209001.524509.106007.80560HepG2NSUN2
COL16A1ENSG00000084636.13899.28930278.144201.692903.418501.37880HepG2NUFIP2
COL16A1ENSG00000084636.13162.69830252.84220-0.636003.755802.78650HepG2PARN
COL16A1ENSG00000084636.13920.80240227.834102.0148059.2979056.16960HepG2PPIL4
COL16A1ENSG00000084636.13487.97730284.803000.776708.951207.67380HepG2PRPF4
COL16A1ENSG00000084636.13946.31040333.768001.5034017.1461014.58060HepG2PRPF6
COL16A1ENSG00000084636.13204.92030371.67780-0.859008.115007.27840HepG2PTBP1
COL16A1ENSG00000084636.13969.85860415.693401.2222022.4129020.93360HepG2PUF60
COL16A1ENSG00000084636.13193.21060441.28780-1.1915017.1731015.95670HepG2PUM1
COL16A1ENSG00000084636.13888.18010440.958701.010102.915902.22790HepG2PUM2
COL16A1ENSG00000084636.13305.70760556.68910-0.8647012.4765011.33050HepG2PUS1
COL16A1ENSG00000084636.13367.86220548.93550-0.577502.831701.96560HepG2RBM15
COL16A1ENSG00000084636.13127.87790562.68730-2.1376014.3826013.38910HepG2RBM22
COL16A1ENSG00000084636.13839.03860365.301901.1995020.5791018.85110HepG2RBM25
COL16A1ENSG00000084636.131171.03200413.622801.5013044.3123042.73630HepG2NELFE
COL16A1ENSG00000084636.13778.02170385.267601.0138011.8884010.74420HepG2RECQL
COL16A1ENSG00000084636.13720.77650360.564400.9992010.239709.14550HepG2RPS19
COL16A1ENSG00000084636.13701.56360208.403801.7511014.2687012.50850HepG2RPS3A
COL16A1ENSG00000084636.13358.20750227.481900.654905.452004.60090HepG2SAFB2
COL16A1ENSG00000084636.131082.83170596.921400.859107.243906.11660HepG2SF3A3
COL16A1ENSG00000084636.13569.00700395.347200.525203.572502.77910HepG2SF3B1
COL16A1ENSG00000084636.131108.28070398.607601.4752052.4368050.21300HepG2SLBP
COL16A1ENSG00000084636.13639.70530265.280501.2698020.3925018.89140HepG2SMN1
COL16A1ENSG00000084636.1376.76550635.49790-3.0494022.1277021.06430HepG2SRFBP1
COL16A1ENSG00000084636.13285.93480519.16680-0.860508.114807.02730HepG2SRSF7
COL16A1ENSG00000084636.13406.98040328.593300.308601.923001.44690HepG2SRSF9
COL16A1ENSG00000084636.13859.98330551.698700.640304.638904.00880HepG2SSB
COL16A1ENSG00000084636.13607.78360466.783200.380703.525702.83960HepG2SUCLG1
COL16A1ENSG00000084636.132960.13090367.479003.0098097.1352094.35340HepG2SUPV3L1
COL16A1ENSG00000084636.131014.97260248.203402.0317059.4570057.70440HepG2TIAL1
COL16A1ENSG00000084636.13598.01190307.847100.957904.834502.91790HepG2TRA2A
COL16A1ENSG00000084636.13561.63500250.429501.1651020.1615018.81560HepG2TRIM56
COL16A1ENSG00000084636.13219.34750443.93670-1.017104.104203.34540HepG2U2AF1
COL16A1ENSG00000084636.13594.33650217.035001.4533018.3682016.45120HepG2UCHL5
COL16A1ENSG00000084636.13375.41200529.37670-0.495804.585203.72330HepG2UPF1
COL16A1ENSG00000084636.13810.24920336.320201.2684010.635708.61700HepG2UPF2
COL16A1ENSG00000084636.13264.14100544.13490-1.0427014.9113012.75130HepG2UTP18
COL16A1ENSG00000084636.132773.02760361.744802.93830102.7042099.17910HepG2XRN2
COL16A1ENSG00000084636.13203.38990281.03900-0.466502.246601.63290HepG2ZC3H8
COL16A1ENSG00000084636.13394.05800582.21490-0.563106.591905.84230HepG2ZNF622
COL16A1ENSG00000084636.138.630700.0000099999.999902.101201.37580K562PCBP3
COL16A1ENSG00000084636.1310.093100.0000099999.999903.083602.23590K562POLR2G
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COL16A1 is not available on ENCORE database.





2 RBPs can affect the splicing of COL16A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECOL16A1ENSG00000084636.13chr1-321490473214910332148934321489703214930732149349-0.167000.000060.00953excludedHepG2SUPV3L1
SECOL16A1ENSG00000084636.13chr1-321490473214910332148934321489703214930732149349-0.163000.000240.07571excludedHepG2XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for COL16A1 is not avaliable on ENCORE database.