CNPY3

General Information

Gene Name       : CNPY3
Gene ID             : ENSG00000137161.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CNPY3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CNPY3ENSG00000137161.1624.5656.1040.33ENCSR000AEF
HepG2CNPY3ENSG00000137161.1673.1851.6162.40ENCSR985KAT
K562CNPY3ENSG00000137161.1624.8225.1524.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CNPY3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CNPY3 RNA is bound by 17 proteins.  







eCLIP assay for CNPY3 is not avaliable on ENCORE database.





17 proteins are bound to CNPY3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr64290672142906894+3'-UTR5.2327925.68369HepG2AKAP1
chr64290669542906730+3'-UTR4.4464411.17441HepG2PCBP2
chr64290548542905570+3'-UTR,CDS4.7589514.10758HepG2LIN28B
chr64290678742906813+3'-UTR5.269749.96049HepG2LARP4
chr64290656542906605+3'-UTR4.146196.03373HepG2LARP4
chr64290656342906595+3'-UTR3.913929.47718HepG2UPF1
chr64290672942906835+3'-UTR3.964646.51752K562PABPC4
chr64290691342906968+3'-UTR3.462508.11844HepG2PCBP2
chr64290635142906416+3'-UTR,CDS5.0403315.38904HepG2UPF1
chr64290545442905568+3'-UTR,CDS,intron-Proximal5.4728312.97306K562LIN28B
chr64290662442906655+3'-UTR5.099017.94456HepG2UPF1
chr64290681942906864+3'-UTR4.353716.59840HepG2LARP4
chr64290671442906818+3'-UTR3.529984.68791K562PCBP1
chr64290583342905904+3'-UTR,CDS3.477054.39727HepG2LIN28B
chr64290589342905943+3'-UTR,CDS3.109747.84823HepG2PPIG
chr64290692142906963+3'-UTR3.754747.43667HepG2LARP4
chr64290673142906779+3'-UTR4.299087.97328HepG2PCBP1
chr64290691342906964+3'-UTR3.095734.26467K562UPF1
chr64290671542906794+3'-UTR4.3210918.85908HepG2UPF1
chr64290665542906687+3'-UTR3.943366.10933HepG2UPF1
chr64290679442906832+3'-UTR3.365737.81784HepG2UPF1
chr64290681242906952+3'-UTR3.403644.69540HepG2IGF2BP1
chr64290671542906782+3'-UTR3.3231015.51606HepG2LARP4
chr64290663742906688+3'-UTR3.521624.17280HepG2AKAP1
chr64290689442906969+3'-UTR3.475825.23218HepG2AKAP1
chr64290659542906624+3'-UTR5.5277410.73398HepG2UPF1
chr64290673042906814+3'-UTR5.2034926.95933HepG2PCBP2
chr64289722042897317+5'-UTR,CDS5.6922760.55041HepG2DDX3X
chr64289722942897343+5'-UTR,CDS3.419543.74019K562DDX3X
chr64290224242902319+CDS,intron-Distal3.129584.00731K562UCHL5
chr64289734142897401+CDS3.182446.05006HepG2PCBP1
chr64290326442903314+CDS,intron-Proximal4.069656.28719HepG2SF3A3
chr64290221242902253+CDS,intron-Distal,intron-Proximal4.114545.81202K562PUM2
chr64290222642902289+CDS,intron-Distal3.112165.12345HepG2GRWD1
chr64289734142897419+CDS4.0749471.33527HepG2DDX3X
chr64289733642897414+CDS3.1937313.85189HepG2UPF1
chr64289731742897341+CDS4.3511910.34792HepG2DDX3X
chr64290320342903262+intron-Distal,intron-Proximal3.900195.34978HepG2PRPF8
chr64290233642902406+intron-Distal,intron-Proximal5.082405.65342K562AQR
chr64290324842903312+intron-Proximal3.317524.05505HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CNPY3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CNPY3 is not available on ENCORE database.

  • 107 RBPs can affect the levels of CNPY3.  








The Knockdown/knockout RNA-Seq assay for CNPY3 is not available on ENCORE database.





107 RBPs can affect the gene expression of CNPY3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CNPY3ENSG00000137161.12733.83220940.59980-0.358102.535801.50710HepG2AATF
CNPY3ENSG00000137161.121303.554401510.21450-0.212302.202901.64760HepG2ACO1
CNPY3ENSG00000137161.121245.310601853.26330-0.573604.888804.20840HepG2AKAP1
CNPY3ENSG00000137161.121061.372601517.15780-0.515408.106606.87880HepG2AKAP8L
CNPY3ENSG00000137161.121496.408801766.58490-0.239502.384301.73840HepG2AUH
CNPY3ENSG00000137161.12718.00930954.99000-0.411503.613002.74750HepG2CALR
CNPY3ENSG00000137161.121274.680801703.61150-0.418502.573601.63740HepG2CCAR1
CNPY3ENSG00000137161.12613.73000882.57900-0.524102.609601.86780HepG2CNOT7
CNPY3ENSG00000137161.121429.57590773.351100.8863010.787009.52200HepG2CPSF6
CNPY3ENSG00000137161.12666.76510963.12400-0.530503.301001.77450HepG2CSTF2T
CNPY3ENSG00000137161.12769.73810950.20680-0.303902.505201.40790HepG2DDX1
CNPY3ENSG00000137161.12730.561901037.62770-0.506204.808103.94070HepG2DDX21
CNPY3ENSG00000137161.12784.207501015.51390-0.372903.130302.15750HepG2DDX24
CNPY3ENSG00000137161.12651.93670922.57160-0.500902.717301.43900HepG2DDX27
CNPY3ENSG00000137161.12533.997401086.66830-1.0250016.0198013.39620HepG2DDX47
CNPY3ENSG00000137161.121233.36080878.211000.489902.168401.30670HepG2DDX59
CNPY3ENSG00000137161.121150.000501444.81870-0.329303.964003.18210HepG2DKC1
CNPY3ENSG00000137161.121183.45430931.717800.344903.327902.56180HepG2DNAJC21
CNPY3ENSG00000137161.12707.23260955.60050-0.434202.540001.48390HepG2AGO1
CNPY3ENSG00000137161.122026.153901465.943400.466804.160503.44200HepG2EIF2S1
CNPY3ENSG00000137161.12542.74910875.45490-0.689703.582402.56090HepG2EIF3D
CNPY3ENSG00000137161.12707.38750979.94880-0.470204.674903.31510HepG2EIF3G
CNPY3ENSG00000137161.12918.130401577.43400-0.780806.747405.70600HepG2EIF4B
CNPY3ENSG00000137161.12956.524801581.38870-0.7253012.1891010.67910HepG2EIF4G1
CNPY3ENSG00000137161.122259.867901514.825700.577007.430106.12270HepG2EIF4G2
CNPY3ENSG00000137161.121573.653602028.30940-0.366205.932005.10800HepG2ETF1
CNPY3ENSG00000137161.12916.023601475.58700-0.6878010.225008.65450HepG2EWSR1
CNPY3ENSG00000137161.12732.09140988.88290-0.433803.849702.53360HepG2FASTKD2
CNPY3ENSG00000137161.12685.45690940.64470-0.456603.796603.05720HepG2HNRNPA1
CNPY3ENSG00000137161.121356.392801162.409400.222601.981001.36740HepG2HNRNPF
CNPY3ENSG00000137161.12698.801001535.79670-1.1360020.5603018.81790HepG2HNRNPK
CNPY3ENSG00000137161.121175.139001459.83750-0.313003.877103.08820HepG2HNRNPL
CNPY3ENSG00000137161.12847.803101154.09160-0.445003.812302.71520HepG2HNRNPM
CNPY3ENSG00000137161.121409.711201144.638800.300402.280301.62050HepG2IGF2BP1
CNPY3ENSG00000137161.12981.019301541.24290-0.651705.914204.96350HepG2IGF2BP2
CNPY3ENSG00000137161.12749.826701446.62880-0.948103.801702.64650HepG2IGF2BP3
CNPY3ENSG00000137161.12458.49820860.52160-0.908307.246105.03710HepG2ILF3
CNPY3ENSG00000137161.121184.953801380.41170-0.220302.433801.47650HepG2KIF1C
CNPY3ENSG00000137161.12903.582901798.54610-0.9931011.7622010.05830HepG2LARP4
CNPY3ENSG00000137161.121002.460901635.33560-0.706007.825406.73640HepG2MAGOH
CNPY3ENSG00000137161.121224.106801644.43680-0.425902.993702.34020HepG2MATR3
CNPY3ENSG00000137161.121334.108101589.23350-0.252501.963901.31850HepG2NOL12
CNPY3ENSG00000137161.12583.35220906.02040-0.635203.469402.23700HepG2NONO
CNPY3ENSG00000137161.12641.799901609.32260-1.3263038.3806036.58040HepG2PCBP1
CNPY3ENSG00000137161.12975.691201637.47330-0.7470018.0188016.85230HepG2PTBP1
CNPY3ENSG00000137161.123292.684001517.140401.1178030.6690028.97220HepG2PUF60
CNPY3ENSG00000137161.121250.068301609.36960-0.364503.507602.75640HepG2PUM2
CNPY3ENSG00000137161.121015.218701538.22470-0.5995013.2610012.08740HepG2PUS1
CNPY3ENSG00000137161.12367.30720908.78160-1.306908.444107.25630HepG2RAVER1
CNPY3ENSG00000137161.121278.198201717.93710-0.426605.297704.15730HepG2RBM15
CNPY3ENSG00000137161.121273.163101695.28430-0.413105.476204.80920HepG2RBM22
CNPY3ENSG00000137161.12967.157101609.57830-0.7349012.0755010.72770HepG2RBM25
CNPY3ENSG00000137161.12963.376401213.45250-0.332902.273201.38190HepG2RBM27
CNPY3ENSG00000137161.121217.866101822.41090-0.581508.770407.90600HepG2NELFE
CNPY3ENSG00000137161.121090.814601697.21860-0.6378013.9987012.77790HepG2RECQL
CNPY3ENSG00000137161.121005.917801252.23960-0.316002.324301.68940HepG2RPLP0
CNPY3ENSG00000137161.12525.41800852.00180-0.697403.525402.83980HepG2RPS19
CNPY3ENSG00000137161.12841.813301119.13710-0.410803.045202.20610HepG2RPS2
CNPY3ENSG00000137161.12519.64190752.10840-0.533403.260902.41630HepG2RRP9
CNPY3ENSG00000137161.12612.06340854.88620-0.482102.359801.48840HepG2SERBP1
CNPY3ENSG00000137161.12948.146701422.11000-0.584903.620502.84540HepG2SF3A3
CNPY3ENSG00000137161.12436.54560827.91010-0.923305.025004.09710HepG2SF3B1
CNPY3ENSG00000137161.121007.994301704.95130-0.7582018.8229017.49690HepG2SF3B4
CNPY3ENSG00000137161.121611.83920921.219100.807006.228005.04850HepG2SNRNP70
CNPY3ENSG00000137161.121125.672501914.74890-0.7664022.6133021.54010HepG2SRFBP1
CNPY3ENSG00000137161.12766.085501779.54690-1.2159033.0887031.85070HepG2SRSF1
CNPY3ENSG00000137161.12450.06410891.02370-0.985304.206102.94340HepG2SRSF3
CNPY3ENSG00000137161.121636.782201142.038000.519209.333508.18600HepG2SRSF7
CNPY3ENSG00000137161.12926.380601447.71040-0.644107.514706.68700HepG2SRSF9
CNPY3ENSG00000137161.12975.052001319.87340-0.436803.019401.68180HepG2SSRP1
CNPY3ENSG00000137161.121286.303301703.61850-0.405405.006404.21180HepG2SUCLG1
CNPY3ENSG00000137161.12733.06080981.64610-0.421302.227601.61200HepG2SUPV3L1
CNPY3ENSG00000137161.121052.556601599.37860-0.6036010.644409.65850HepG2TAF15
CNPY3ENSG00000137161.12857.326501296.40170-0.596602.540001.51390HepG2TBRG4
CNPY3ENSG00000137161.121149.345001469.76760-0.354803.581002.63450HepG2TIA1
CNPY3ENSG00000137161.12773.653201009.88470-0.384403.543502.99220HepG2TIAL1
CNPY3ENSG00000137161.12801.882001019.00130-0.345703.887103.24160HepG2TRIM56
CNPY3ENSG00000137161.12983.021101431.00700-0.541704.673503.86790HepG2U2AF1
CNPY3ENSG00000137161.121087.799101569.12190-0.528503.015502.14300HepG2UBE2L3
CNPY3ENSG00000137161.12341.74150579.80220-0.762704.617103.63220HepG2UCHL5
CNPY3ENSG00000137161.121082.866701296.31120-0.259602.421301.43030HepG2UTP18
CNPY3ENSG00000137161.12691.802801217.63160-0.8156017.4089016.09670HepG2UTP3
CNPY3ENSG00000137161.12583.36000894.27280-0.616302.775601.50540HepG2XRCC5
CNPY3ENSG00000137161.121198.76450927.410800.370205.028304.16830HepG2ZC3H8
CNPY3ENSG00000137161.12590.005301387.07120-1.2332047.9211046.37110HepG2ZNF622
CNPY3ENSG00000137161.12285.37850462.82990-0.697605.214103.53020K562AARS
CNPY3ENSG00000137161.12827.34320581.846100.507703.490502.09910K562ABCF1
CNPY3ENSG00000137161.121051.90370630.582800.7381013.8234012.65790K562AGGF1
CNPY3ENSG00000137161.12915.20240656.163300.479904.264303.44990K562AKAP8L
CNPY3ENSG00000137161.121039.89910688.498400.594806.105504.68100K562ATP5C1
CNPY3ENSG00000137161.12927.94730753.537800.300302.474201.37250K562CCDC124
CNPY3ENSG00000137161.12532.03020348.785400.609104.727603.70610K562CPSF6
CNPY3ENSG00000137161.12961.92570739.847300.378603.000201.47190K562DDX19B
CNPY3ENSG00000137161.12452.67690668.60160-0.562706.284005.35840K562DDX47
CNPY3ENSG00000137161.12943.82350705.995300.418804.835203.62570K562DKC1
CNPY3ENSG00000137161.12574.45200408.970600.490102.897201.96390K562EFTUD2
CNPY3ENSG00000137161.12890.72780622.727800.516306.030505.02980K562EIF2S2
CNPY3ENSG00000137161.12653.43610418.346200.643204.760403.62630K562FIP1L1
CNPY3ENSG00000137161.12104.74970250.63570-1.258607.549006.26130K562G3BP2
CNPY3ENSG00000137161.121354.33930829.760700.706709.390907.97290K562GRSF1
CNPY3ENSG00000137161.12181.41910380.73910-1.069505.273503.52940K562HNRNPK
CNPY3ENSG00000137161.12485.77800344.147800.497202.829501.88810K562HNRNPM
CNPY3ENSG00000137161.12965.28090567.115700.767205.912004.76310K562HSPD1
CNPY3ENSG00000137161.12240.18140388.86320-0.695104.464802.55910K562ILF3
CNPY3ENSG00000137161.12897.50100696.306700.366102.993502.13350K562KIF1C
CNPY3ENSG00000137161.12900.43290666.574600.433802.693801.63560K562MAK16
CNPY3ENSG00000137161.121219.61790780.045800.644706.719105.18450K562MBNL1
CNPY3ENSG00000137161.12738.47530546.759700.433502.333801.53950K562NAA15
CNPY3ENSG00000137161.12501.22340661.40690-0.400102.215501.47200K562PCBP3
CNPY3ENSG00000137161.12376.29070507.33490-0.431102.935602.11010K562POLR2G
CNPY3ENSG00000137161.12755.58290474.980700.669605.985404.70110K562PPIG
CNPY3ENSG00000137161.12595.47630453.913800.391502.597301.72740K562PSIP1
CNPY3ENSG00000137161.121510.909601078.372000.486504.695403.63620K562PUF60
CNPY3ENSG00000137161.12985.19110650.638900.598405.166504.45290K562PUS1
CNPY3ENSG00000137161.121090.82790634.028400.782707.798506.83320K562RBM15
CNPY3ENSG00000137161.12471.50910626.31200-0.409603.666202.60590K562SRPK2
CNPY3ENSG00000137161.12251.74780381.76280-0.600702.322801.66780K562SRSF1
CNPY3ENSG00000137161.12178.83990250.81360-0.487902.403401.65490K562U2AF2
CNPY3ENSG00000137161.12297.95830407.71190-0.452402.422101.47580K562UCHL5
CNPY3ENSG00000137161.12416.87430584.48700-0.487604.912303.81330K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CNPY3 is not available on ENCORE database.





21 RBPs can affect the splicing of CNPY3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECNPY3ENSG00000137161.12chr6+429022124290233642896937428974594290331142903408-0.224000.000510.01206excludedK562SRSF1
SECNPY3ENSG00000137161.12chr6+429022124290233642896937428974594290331142903408-0.057000.002290.04065excludedHepG2U2AF1
SECNPY3ENSG00000137161.12chr6+429031494290321142902212429023364290331142903408-0.097000.000140.01762excludedHepG2PRPF8
SECNPY3ENSG00000137161.12chr6+429031494290321142902212429023364290331142903408-0.125000.000000.00013excludedK562AKAP8L
SECNPY3ENSG00000137161.12chr6+429022124290233642896937428974594290314942903211-0.216000.000020.00446excludedHepG2HNRNPM
SECNPY3ENSG00000137161.12chr6+4290314942903211429022124290233642903311429034080.116000.000750.07834includedK562FMR1
SECNPY3ENSG00000137161.12chr6+4290314942903211429022124290233642903311429034080.192000.000000.00000includedHepG2HNRNPK
SECNPY3ENSG00000137161.12chr6+4290221242902336428969374289745942903311429034080.058000.000340.03860includedHepG2DDX59
SECNPY3ENSG00000137161.12chr6+429031494290321142902115429023364290331142903408-0.066000.000000.00000excludedHepG2DDX59
SECNPY3ENSG00000137161.12chr6+429031494290321142902212429023364290331142903408-0.052000.000000.00001excludedHepG2U2AF2
SECNPY3ENSG00000137161.12chr6+429054544290557742903311429034084290582742905945-0.067000.000000.00000excludedHepG2U2AF2
SECNPY3ENSG00000137161.12chr6+429031494290321142896981428974594290331142903408-0.248000.007400.08360excludedK562PUS1
SECNPY3ENSG00000137161.12chr6+429031494290321142902115429023364290331142903408-0.059000.000050.00645excludedHepG2FTO
SECNPY3ENSG00000137161.12chr6+4290314942903211429022124290233642903311429034080.069000.000000.00221includedHepG2RBM15
SECNPY3ENSG00000137161.12chr6+4290314942903211429022124290233642903311429034080.112000.000020.00102includedHepG2SRSF1
SECNPY3ENSG00000137161.12chr6+429022124290233642896937428974594290331142903408-0.163000.000000.00004excludedHepG2SRSF1
SECNPY3ENSG00000137161.12chr6+4290314942903211429022124290233642903311429034080.168000.000000.00001includedHepG2PCBP1
SECNPY3ENSG00000137161.12chr6+4290314942903211428969814289745942903311429034080.352000.000480.07365includedK562EIF4G2
SECNPY3ENSG00000137161.12chr6+4290314942903211429022124290233642903311429034080.087000.000310.07523includedHepG2NOL12
SECNPY3ENSG00000137161.12chr6+4290314942903211429022124290233642903311429034080.131000.000010.00528includedK562UPF1
SECNPY3ENSG00000137161.12chr6+429031494290321142902115429023364290331142903408-0.118000.000000.00011excludedK562RBM15
SECNPY3ENSG00000137161.12chr6+429031494290321142902212429023364290331142903408-0.107000.000030.00138excludedK562AGGF1
SECNPY3ENSG00000137161.12chr6+4290314942903211429022124290233642903311429034080.254000.000020.00164includedK562HNRNPK
SECNPY3ENSG00000137161.12chr6+4290314942903211429022124290233642903311429034080.108000.000020.01603includedHepG2SLTM
SECNPY3ENSG00000137161.12chr6+429031494290321142896981428974594290331142903408-0.398000.001720.06059excludedK562PTBP1
SECNPY3ENSG00000137161.12chr6+429022124290233642896937428974594290331142903408-0.120000.004520.06423excludedK562HNRNPC
A3SSCNPY3ENSG00000137161.12chr6+4290327442903408429033114290340842903149429032110.600000.000170.03717longerK562RBM22
A3SSCNPY3ENSG00000137161.12chr6+4290327442903408429033114290340842903149429032110.511000.000120.01497longerHepG2RBM22
MXECNPY3ENSG00000137161.12chr6+42902115429023364290314942903211428969814289745942903311429034080.077000.000010.000651includedHepG2FTO
MXECNPY3ENSG00000137161.12chr6+42902115429023364290314942903211428969814289745942903311429034080.118000.000040.002691includedK562RBM15
MXECNPY3ENSG00000137161.12chr6+42903311429034084290545442905577428969814289745942905827429059450.058000.000010.000121includedHepG2U2AF2
MXECNPY3ENSG00000137161.12chr6+42903311429034084290545442905577428969814289745942905827429059450.110000.000900.019021includedK562HNRNPC
MXECNPY3ENSG00000137161.12chr6+42902115429023364290314942903211428969814289745942903311429034080.059000.000010.003151includedHepG2DDX59
MXECNPY3ENSG00000137161.12chr6+4290211542902336429031494290321142896981428974594290331142903408-0.071000.000100.033532includedHepG2RBM15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CNPY3 is not avaliable on ENCORE database.