CBR4

General Information

Gene Name       : CBR4
Gene ID             : ENSG00000145439.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CBR4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CBR4ENSG00000145439.1119.4315.7917.61ENCSR000AEF
HepG2CBR4ENSG00000145439.116.3610.898.62ENCSR985KAT
K562CBR4ENSG00000145439.1111.0911.1511.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CBR4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CBR4 RNA is bound by 16 proteins.  







eCLIP assay for CBR4 is not avaliable on ENCORE database.





16 proteins are bound to CBR4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4169928786169928835-3'-UTR,CDS,intron-Distal,intron-Proximal3.949687.28307HepG2BCLAF1
chr4169923097169923178-3'-UTR,intron-Distal,intron-Proximal4.751037.66316K562KHSRP
chr4169923091169923185-3'-UTR,intron-Distal,intron-Proximal4.730685.64557HepG2KHSRP
chr4169911018169911085-3'-UTR,intron-Distal3.237003.51804HepG2HNRNPL
chr4169911247169911356-3'-UTR,CDS,intron-Distal4.108584.49585HepG2LSM11
chr4169927998169928043-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.416556.60490HepG2BCLAF1
chr4169923289169923368-5'-UTR,CDS,intron-Distal,intron-Proximal3.106497.88236HepG2U2AF2
chr4169923296169923357-5'-UTR,CDS,intron-Distal,intron-Proximal3.288663.48031HepG2BCLAF1
chr4169923304169923366-5'-UTR,CDS,intron-Distal,intron-Proximal4.281963.60286K562U2AF1
chr4169931205169931220-CDS,intron-Distal4.495399.59567HepG2HNRNPC
chr4169931167169931205-CDS,intron-Distal3.931678.30313HepG2HNRNPC
chr4169931049169931108-CDS,intron-Distal4.490833.93614HepG2AQR
chr4169903324169903372-intron-Distal4.575775.12361K562EXOSC5
chr4169919631169919689-intron-Distal3.244548.80115HepG2U2AF2
chr4169904506169904591-intron-Distal5.6468411.66401K562EXOSC5
chr4169904325169904359-intron-Distal4.614775.44508K562EXOSC5
chr4169883019169883122-intron-Distal4.087796.24904HepG2PTBP1
chr4169848524169848654-intron-Distal4.2885817.55953HepG2HNRNPL
chr4169852526169852582-intron-Distal4.977387.23521HepG2HNRNPM
chr4169864307169864383-intron-Distal3.305413.11000HepG2HNRNPM
chr4169902517169902554-intron-Distal4.039483.27829HepG2MATR3
chr4169906022169906055-intron-Distal3.338503.43829K562EXOSC5
chr4169853003169853086-intron-Distal3.620244.81844HepG2SUGP2
chr4169903630169903673-intron-Distal3.965753.29248HepG2SUGP2
chr4169903078169903122-intron-Distal3.182983.08928HepG2MATR3
chr4169903710169903751-intron-Distal4.325733.59909K562EXOSC5
chr4169896540169896709-intron-Distal3.136054.02525HepG2HLTF
chr4169901502169901554-intron-Distal3.848023.39864HepG2SUGP2
chr4169855347169855399-intron-Distal4.351015.04879HepG2SUGP2
chr4169852791169852879-intron-Distal3.746256.26907HepG2SUGP2
chr4169919635169919727-intron-Distal3.140686.71344HepG2HNRNPL
chr4169864308169864417-intron-Distal3.122293.59523HepG2SUGP2
chr4169903633169903680-intron-Distal4.775756.43853HepG2MATR3
chr4169839648169839709-intron-Distal5.156646.12104HepG2QKI
chr4169905012169905053-intron-Distal4.507023.89080K562EXOSC5
chr4169903631169903672-intron-Distal4.500984.80466K562EXOSC5
chr4169875182169875273-intron-Distal4.353994.86548HepG2SUGP2
chr4169903748169903845-intron-Distal4.787174.51059HepG2EXOSC5
chr4169852299169852409-intron-Distal4.877396.88667HepG2SUGP2
chr4169904076169904118-intron-Distal3.646844.61282K562EXOSC5
chr4169908667169908734-intron-Distal,intron-Proximal4.471296.21741HepG2CSTF2
chr4169852306169852390-intron-Distal3.522013.08928HepG2MATR3
chr4169903791169903827-intron-Distal4.428794.80466K562EXOSC5
chr4169821018169821073-intron-Distal3.770483.15106HepG2HNRNPC
chr4169903016169903110-intron-Distal3.719384.63118HepG2HNRNPM
chr4169852655169852725-intron-Distal4.522015.37222HepG2MATR3
chr4169912615169912756-intron-Distal3.184136.00731HepG2KHSRP
chr4169931035169931099-intron-Distal6.1385010.48996K562AQR
chr4169853009169853077-intron-Distal3.023583.97110HepG2MATR3
chr4169852888169852958-intron-Distal3.563244.28254HepG2MATR3
chr4169864518169864587-intron-Distal4.159233.62366HepG2HNRNPM
chr4169847884169847926-intron-Distal3.817733.27714HepG2HNRNPL
chr4169885471169885553-intron-Distal3.207253.23296HepG2SUGP2
chr4169919262169919319-intron-Distal4.173743.66668K562KHSRP
chr4169912656169912715-intron-Distal3.636145.78005K562KHSRP
chr4169919632169919699-intron-Distal3.895624.52298HepG2QKI
chr4169912504169912556-intron-Distal5.176885.47569HepG2U2AF2
chr4169852610169852733-intron-Distal5.186798.33028HepG2HNRNPM
chr4169905891169905939-intron-Distal4.214543.01445K562EXOSC5
chr4169852507169852554-intron-Distal4.025973.86809HepG2SUGP2
chr4169905503169905564-intron-Distal5.236739.02315K562EXOSC5
chr4169852231169852299-intron-Distal3.346024.08528HepG2SUGP2
chr4169904536169904586-intron-Distal4.447585.01910HepG2MATR3
chr4169904164169904209-intron-Distal4.454233.14677HepG2EXOSC5
chr4169883501169883585-intron-Distal3.242794.08528HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CBR4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CBR4 is not available on ENCORE database.

  • 102 RBPs can affect the levels of CBR4.  








The Knockdown/knockout RNA-Seq assay for CBR4 is not available on ENCORE database.





102 RBPs can affect the gene expression of CBR4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CBR4ENSG00000145439.7895.26240718.739900.316702.074201.55070HepG2BOP1
CBR4ENSG00000145439.7884.55850586.237400.593403.315002.48070HepG2CALR
CBR4ENSG00000145439.7741.54940502.981900.559902.791702.02300HepG2CNOT7
CBR4ENSG00000145439.7538.72130382.149800.495303.463702.43500HepG2DDX24
CBR4ENSG00000145439.7482.46860352.769300.451602.790301.39330HepG2DDX28
CBR4ENSG00000145439.7536.12640739.47820-0.463902.669402.06230HepG2DDX6
CBR4ENSG00000145439.7588.36450441.072300.415602.741901.76050HepG2DHX30
CBR4ENSG00000145439.7510.52050764.92960-0.583403.351102.59820HepG2EIF4B
CBR4ENSG00000145439.71121.28920756.405700.567808.342007.03420HepG2EIF4G1
CBR4ENSG00000145439.7995.95100724.600900.458803.563002.64790HepG2EIF4G2
CBR4ENSG00000145439.7723.35290554.138400.384402.754101.66240HepG2ESF1
CBR4ENSG00000145439.7741.38280550.024400.430602.620301.80650HepG2EWSR1
CBR4ENSG00000145439.7560.64840387.518500.532703.704402.24360HepG2FKBP4
CBR4ENSG00000145439.7485.09720792.64920-0.708406.385905.35800HepG2FXR1
CBR4ENSG00000145439.7521.75590748.04900-0.519802.228501.65030HepG2GPKOW
CBR4ENSG00000145439.7885.41320538.243900.718004.062702.35840HepG2HLTF
CBR4ENSG00000145439.7910.46270704.654000.369603.396102.37500HepG2HNRNPA2B1
CBR4ENSG00000145439.7799.12020513.541700.637803.766802.96760HepG2HNRNPC
CBR4ENSG00000145439.7529.83420744.50110-0.490703.525302.74190HepG2HNRNPK
CBR4ENSG00000145439.7897.50060713.872700.330102.004901.46030HepG2HNRNPLL
CBR4ENSG00000145439.7225.49250445.71900-0.983108.841307.30470HepG2HNRNPM
CBR4ENSG00000145439.7477.25620797.37640-0.740506.051205.14460HepG2MATR3
CBR4ENSG00000145439.7474.80930816.16950-0.781507.174406.17700HepG2NCBP2
CBR4ENSG00000145439.7917.17750632.950700.535004.532603.58140HepG2NSUN2
CBR4ENSG00000145439.7545.52130414.919200.394703.107502.29290HepG2PRPF4
CBR4ENSG00000145439.71026.88410725.782500.500604.646803.89680HepG2PUF60
CBR4ENSG00000145439.7958.88570743.710000.366503.208602.54250HepG2QKI
CBR4ENSG00000145439.71325.49160674.973500.9735017.9491016.32920HepG2RBM25
CBR4ENSG00000145439.7456.74740665.25590-0.542503.572102.43730HepG2RBM27
CBR4ENSG00000145439.7571.85090711.80500-0.315802.414101.83310HepG2RECQL
CBR4ENSG00000145439.7484.04010355.410800.445502.507301.75560HepG2RRP9
CBR4ENSG00000145439.7621.60500454.311000.452204.512503.72350HepG2SAFB2
CBR4ENSG00000145439.7423.34490722.43300-0.771005.784504.78780HepG2SF3A3
CBR4ENSG00000145439.7479.45760714.94320-0.576406.427705.58830HepG2SF3B4
CBR4ENSG00000145439.7566.88170695.85750-0.295702.561401.88280HepG2SLBP
CBR4ENSG00000145439.71095.34240877.702900.319503.447202.90680HepG2SRFBP1
CBR4ENSG00000145439.7902.02440746.254000.273402.169101.73660HepG2SRSF1
CBR4ENSG00000145439.71336.24370760.248700.813507.544905.82550HepG2SRSF3
CBR4ENSG00000145439.71035.42120762.086700.442106.049005.34540HepG2SSB
CBR4ENSG00000145439.7283.39460439.03230-0.631503.679202.39260HepG2STIP1
CBR4ENSG00000145439.7809.10340580.760400.478302.760301.43670HepG2SUGP2
CBR4ENSG00000145439.7678.04190463.472200.548803.898403.11710HepG2SUPV3L1
CBR4ENSG00000145439.7952.13940670.784500.505204.323103.64630HepG2TAF15
CBR4ENSG00000145439.7431.19710310.676600.472802.397701.46210HepG2TFIP11
CBR4ENSG00000145439.7834.50610552.572500.594703.574302.86440HepG2U2AF1
CBR4ENSG00000145439.7363.21220618.55920-0.768109.924508.90260HepG2UTP3
CBR4ENSG00000145439.7585.08950704.63400-0.268202.241501.73460HepG2ZNF622
CBR4ENSG00000145439.7817.666601202.57780-0.556503.066001.76930K562ABCF1
CBR4ENSG00000145439.71014.184501246.98790-0.298102.977602.39200K562AGGF1
CBR4ENSG00000145439.7356.194801228.52540-1.7862039.2822037.28280K562AQR
CBR4ENSG00000145439.7554.19820745.11870-0.427103.738902.16410K562BCCIP
CBR4ENSG00000145439.7440.86080719.95730-0.707609.355607.56920K562BCLAF1
CBR4ENSG00000145439.7460.71810932.42840-1.017106.072304.76830K562BOP1
CBR4ENSG00000145439.7447.62940837.56940-0.903906.690204.42370K562BUD13
CBR4ENSG00000145439.7622.28890928.63570-0.577504.488102.57870K562CKAP4
CBR4ENSG00000145439.7825.569901731.95720-1.068909.520807.52210K562CNOT7
CBR4ENSG00000145439.7837.486201342.65040-0.680906.140504.45510K562CPEB4
CBR4ENSG00000145439.7334.86850991.49720-1.5660013.7172011.95060K562CPSF6
CBR4ENSG00000145439.7361.13490546.19460-0.596904.792403.34820K562CSTF2
CBR4ENSG00000145439.71301.772001856.47180-0.512107.127905.58650K562CELF1
CBR4ENSG00000145439.7389.07920631.42560-0.698508.760706.42240K562DDX27
CBR4ENSG00000145439.7570.47000752.95920-0.400403.139702.02400K562DDX3X
CBR4ENSG00000145439.7923.602001388.93130-0.588605.702104.81650K562DDX47
CBR4ENSG00000145439.7563.80890763.39630-0.437204.217002.50300K562DDX6
CBR4ENSG00000145439.7300.30260545.15930-0.860307.804006.20270K562EFTUD2
CBR4ENSG00000145439.7519.54500774.49200-0.576005.636404.66420K562EIF2S2
CBR4ENSG00000145439.7222.00130389.09360-0.809503.711702.52830K562EIF3A
CBR4ENSG00000145439.7426.20550765.42050-0.844705.017003.95960K562EIF3G
CBR4ENSG00000145439.7309.42480786.64890-1.3461023.1758020.53760K562EIF4A3
CBR4ENSG00000145439.7506.15560708.41260-0.485004.776503.18860K562EIF4B
CBR4ENSG00000145439.7534.27980686.65940-0.362002.732501.45420K562EWSR1
CBR4ENSG00000145439.7527.100201008.71210-0.936407.250705.83110K562FMR1
CBR4ENSG00000145439.7559.76710854.92550-0.611004.130502.99430K562FTO
CBR4ENSG00000145439.7381.49600818.08040-1.1006021.0460019.48900K562FXR1
CBR4ENSG00000145439.7641.30670821.58390-0.357403.067701.86510K562GLRX3
CBR4ENSG00000145439.7440.15160946.68240-1.104908.838507.41210K562GPKOW
CBR4ENSG00000145439.7504.494701032.19200-1.0328010.135108.66470K562GRSF1
CBR4ENSG00000145439.71124.030901620.93930-0.528103.070701.40720K562HNRNPAB
CBR4ENSG00000145439.7425.73740662.94850-0.638904.980103.38790K562HNRNPF
CBR4ENSG00000145439.7721.070201255.32020-0.799805.948704.33720K562HNRNPL
CBR4ENSG00000145439.7350.37070710.86390-1.020706.055304.61020K562HNRNPM
CBR4ENSG00000145439.7812.834201171.94640-0.527903.146302.30020K562HSPD1
CBR4ENSG00000145439.7778.285201137.65350-0.547703.251502.10620K562IGF2BP2
CBR4ENSG00000145439.7994.113301581.25750-0.669603.761602.08130K562ILF2
CBR4ENSG00000145439.7464.30720808.22660-0.799703.316502.28520K562KRR1
CBR4ENSG00000145439.7596.189201196.38310-1.004807.155205.77480K562MAGOH
CBR4ENSG00000145439.7827.541801194.07070-0.529002.967802.00790K562MATR3
CBR4ENSG00000145439.7404.00200924.04800-1.193609.667207.95640K562METAP2
CBR4ENSG00000145439.7545.88250863.78910-0.6621010.197208.74690K562MTPAP
CBR4ENSG00000145439.7620.74070959.74320-0.6287011.4037010.03190K562NSUN2
CBR4ENSG00000145439.7688.82250496.206800.473102.395601.62330K562PCBP3
CBR4ENSG00000145439.7539.53720380.617200.503302.868102.05230K562POLR2G
CBR4ENSG00000145439.7545.26480981.09890-0.847406.270904.95200K562PPIG
CBR4ENSG00000145439.7286.57540530.50150-0.888407.651706.39740K562PRPF8
CBR4ENSG00000145439.7725.583701162.30480-0.679804.422703.60290K562PTBP1
CBR4ENSG00000145439.71146.319701647.09090-0.522906.298105.07010K562PUF60
CBR4ENSG00000145439.7593.838801114.92340-0.908805.909204.62130K562RBM22
CBR4ENSG00000145439.7316.90610540.41040-0.770005.290504.15790K562RPS19
CBR4ENSG00000145439.7413.68870637.02540-0.622804.227302.95970K562RPS3
CBR4ENSG00000145439.71033.935601577.67120-0.609703.617001.81790K562SBDS
CBR4ENSG00000145439.7666.016601163.47470-0.804803.043401.76110K562SF1
CBR4ENSG00000145439.7583.42260947.02760-0.6989010.435108.92580K562SF3A3
CBR4ENSG00000145439.7479.00960900.15880-0.910103.819102.66540K562SF3B1
CBR4ENSG00000145439.7521.70140889.00110-0.769008.770207.19950K562SF3B4
CBR4ENSG00000145439.7295.89250421.36070-0.510003.217601.84630K562SLBP
CBR4ENSG00000145439.7759.83810970.25080-0.352703.882202.79260K562SRPK2
CBR4ENSG00000145439.7636.554901139.36160-0.839906.075005.03490K562SRSF1
CBR4ENSG00000145439.7447.80750615.02220-0.457802.583301.57330K562SRSF4
CBR4ENSG00000145439.7739.459901037.39560-0.488402.842301.57150K562STAU1
CBR4ENSG00000145439.7256.62080513.70260-1.001308.514006.68950K562SUPV3L1
CBR4ENSG00000145439.7595.802501153.29060-0.952806.229205.13040K562TARDBP
CBR4ENSG00000145439.7816.150501112.43110-0.446802.411601.65330K562TIA1
CBR4ENSG00000145439.7477.60110640.34370-0.423002.249701.41280K562TIAL1
CBR4ENSG00000145439.7528.667201017.63640-0.9448021.2547019.49340K562UPF1
CBR4ENSG00000145439.7622.06040870.75880-0.485204.608103.46270K562WDR3
CBR4ENSG00000145439.71070.503301455.82660-0.443504.543702.88190K562WRN
CBR4ENSG00000145439.7352.82340553.54820-0.649804.858603.09310K562XRN2
CBR4ENSG00000145439.71040.451601383.85150-0.411503.747002.71480K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CBR4 is not available on ENCORE database.





22 RBPs can affect the splicing of CBR4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECBR4ENSG00000145439.7chr4-1699193521699194361699087401699114791699232211699233560.182000.000550.04975includedHepG2G3BP1
SECBR4ENSG00000145439.7chr4-1699270351699270651699227251699233561699279051699280420.087000.000440.03198includedHepG2RBM22
SECBR4ENSG00000145439.7chr4-169923221169923356169908740169911479169927905169928042-0.104000.001900.02424excludedHepG2U2AF2
SECBR4ENSG00000145439.7chr4-169930102169930205169928791169928907169931098169931426-0.137000.002460.02993excludedHepG2U2AF2
SECBR4ENSG00000145439.7chr4-169930102169930205169928791169928907169931098169931426-0.179000.000010.00206excludedHepG2AKAP1
SECBR4ENSG00000145439.7chr4-1699301021699302051699287911699289071699310981699314260.146000.000790.00998includedK562AQR
SECBR4ENSG00000145439.7chr4-1699301021699302051699287911699289071699310981699314260.184000.000610.08503includedHepG2TIA1
SECBR4ENSG00000145439.7chr4-1699301021699302051699287911699289071699310981699314260.187000.001420.09443includedK562SUPV3L1
SECBR4ENSG00000145439.7chr4-1699193521699194361699087401699114791699232211699233560.243000.000010.00107includedHepG2SFPQ
SECBR4ENSG00000145439.7chr4-169919352169919436169908740169911479169923221169923356-0.107000.000000.00076excludedHepG2FTO
SECBR4ENSG00000145439.7chr4-169919352169919436169908740169911479169923221169923356-0.076000.000000.00125excludedK562LARP4
SECBR4ENSG00000145439.7chr4-1699193521699194361699087401699114791699232211699233560.100000.000370.06937includedK562APOBEC3C
SECBR4ENSG00000145439.7chr4-169930102169930205169928791169928907169931098169931426-0.176000.001940.06830excludedHepG2MATR3
SECBR4ENSG00000145439.7chr4-1699193521699194361699087401699114791699232211699233560.132000.001090.02431includedK562U2AF1
SECBR4ENSG00000145439.7chr4-1699193521699194361699087401699114791699232211699233560.221000.000060.00933includedHepG2DDX6
SECBR4ENSG00000145439.7chr4-1699301021699302051699287911699289071699310981699314260.087000.000450.06269includedK562HNRNPM
SECBR4ENSG00000145439.7chr4-169919352169919436169908740169911479169923221169923356-0.094000.000000.00004excludedK562HNRNPUL1
SECBR4ENSG00000145439.7chr4-1699270351699270651699227251699233561699279051699280420.068000.000400.01825includedK562TARDBP
SECBR4ENSG00000145439.7chr4-1699193521699194361699087401699114791699232211699233560.128000.000000.00050includedK562HNRNPU
SECBR4ENSG00000145439.7chr4-169919352169919436169908740169911479169923221169923356-0.051000.001000.02760excludedK562AGGF1
SECBR4ENSG00000145439.7chr4-1699193521699194361699087401699114791699232211699233560.151000.000000.00005includedK562CPSF6
SECBR4ENSG00000145439.7chr4-1699193521699194361699087401699114791699232211699233560.306000.000000.00003includedHepG2HNRNPU
SECBR4ENSG00000145439.7chr4-169919352169919436169908740169911479169923221169923356-0.117000.001050.04020excludedHepG2HNRNPC
SECBR4ENSG00000145439.7chr4-1699193521699194361699087401699114791699232211699233560.155000.000040.02668includedHepG2DROSHA
A3SSCBR4ENSG00000145439.7chr4-1699193521699194751699193521699194361699232211699233560.459000.000140.00118longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CBR4 is not avaliable on ENCORE database.