CAPRIN1

General Information

Gene Name       : CAPRIN1
Gene ID             : ENSG00000135387.20
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CAPRIN1)


Antibody Validation

 View validation images for all CAPRIN1 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CAPRIN1ENSG00000135387.20161.05151.35156.20ENCSR000AEF
HepG2CAPRIN1ENSG00000135387.20120.13153.67136.90ENCSR985KAT
K562CAPRIN1ENSG00000135387.20169.82182.28176.05ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq CAPRIN1-BGKcLV26-K562ENCSR633RMNCAPRIN1K562ReleasedENCSR900GQL   CRISPRKD% = 54.9,62.4






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
CAPRIN1ENCAB944GEFA303-881A1Released, ENCODE4BGKcLV26-53, Released, ENCODE4
CAPRIN1ENCAB013NZMA303-882A1Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
CAPRIN1K562CRISPRENCSR633RMNENCSR900GQLCAPRIN1-BGKcLV26-53,CAPRIN1-BGKcLV26-54NT-BGKcLV26-1,NT-BGKcLV26-254.9,62.4ReleasedENCODE4
CAPRIN1HepG2CRISPRBGHcLV27-35,BGHcLV27-36BGHcLV27-1,BGHcLV27-20.0,0.0NotSatisfiedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
CAPRIN1Product_ID: A303-881A
Lot_ID: 1
Source: Bethyl Labs
Target Name: CAPRIN1-human		 Bethyl_A303-881A_1_CAPRIN1.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the CAPRIN1 specific antibody, A303-881A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CAPRIN1-specific antibody, A303-881A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
 CAPRIN1-K562-CRISPR-A303-881A.png<br>Caption: Western blot following CRISPR against CAPRIN1 in K562 whole cell lysate using CAPRIN1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against CAPRIN1. CAPRIN1 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
CAPRIN1Product_ID: A303-882A
Lot_ID: 1
Source: Bethyl Labs
Target Name: CAPRIN1-human		 Bethyl_A303-882A_1_CAPRIN1.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the CAPRIN1 specific antibody, A303-882A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the CAPRIN1-specific antibody, A303-882A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








RNA Targets

  • eCLIP assay for CAPRIN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CAPRIN1 RNA is bound by 48 proteins.  







eCLIP assay for CAPRIN1 is not avaliable on ENCORE database.





48 proteins are bound to CAPRIN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr113412173134121826+3'-UTR3.5494316.97597K562UPF1
chr113411931134119357+3'-UTR,CDS,intron-Proximal3.592936.51619K562AQR
chr113412145334121511+3'-UTR3.256445.26494HepG2IGF2BP1
chr113412196234122008+3'-UTR4.738205.94530HepG2SUB1
chr113412107134121099+3'-UTR3.394317.54844K562YBX3
chr113412195634122005+3'-UTR3.225253.41934K562NOLC1
chr113412173934121783+3'-UTR3.8771011.65548K562IGF2BP1
chr113412023534120335+3'-UTR,intron-Distal3.4832010.29051K562KHSRP
chr113412048634120512+3'-UTR,intron-Distal5.0234813.35120K562CPSF6
chr113412168334121736+3'-UTR4.2264519.31682K562IGF2BP1
chr113412118734121203+3'-UTR3.374989.71899K562YBX3
chr113411931434119357+3'-UTR,CDS,intron-Proximal4.554253.70131HepG2PRPF8
chr113412043434120530+3'-UTR,intron-Distal3.844828.25088HepG2KHSRP
chr113412044834120486+3'-UTR,intron-Distal5.6364611.28968K562CPSF6
chr113412194634122000+3'-UTR3.620059.51734K562YBX3
chr113412051234120572+3'-UTR,intron-Distal4.0750314.22820K562CPSF6
chr113412051434120556+3'-UTR,intron-Distal4.608799.98780K562PUM2
chr113412034334120410+3'-UTR,intron-Distal3.2665411.43501K562KHSRP
chr113411932234119373+3'-UTR,CDS,intron-Proximal3.988345.94541K562TIA1
chr113412120334121226+3'-UTR3.7149511.60152K562YBX3
chr113412041034120445+3'-UTR,intron-Distal3.2146210.79849K562KHSRP
chr113412091834120977+3'-UTR3.606605.55412K562IGF2BP1
chr113412111234121125+3'-UTR4.136844.24775K562IGF2BP2
chr113412144734121513+3'-UTR3.563177.03308K562IGF2BP1
chr113412178334121853+3'-UTR3.398568.49173K562IGF2BP1
chr113412115734121187+3'-UTR4.245828.79526K562YBX3
chr113412093134120968+3'-UTR4.091703.96931HepG2G3BP1
chr113412110834121148+3'-UTR3.760126.33374K562TIA1
chr113412100034121055+3'-UTR3.391044.37610K562IGF2BP1
chr113412097234121046+3'-UTR4.073985.01572HepG2SUB1
chr113407341734073447+5'-UTR,intron-Proximal4.0096912.56301K562AQR
chr113407324734073343+5'-UTR3.495323.98217K562DDX3X
chr113407445634074579+5'-UTR,intron-Distal4.6148217.50784K562NONO
chr113407352834073606+5'-UTR,intron-Distal4.158284.07750HepG2HNRNPK
chr113407338634073419+5'-UTR,intron-Proximal4.145327.73111HepG2GRWD1
chr113407340434073424+5'-UTR,intron-Proximal3.752467.85990HepG2PRPF8
chr113407392934074019+5'-UTR,CDS,intron-Distal,intron-Proximal4.0827218.63397HepG2GRWD1
chr113407337434073423+5'-UTR,intron-Proximal3.615795.36986K562RBM15
chr113407460934074701+5'-UTR,intron-Distal4.7785112.23609K562NONO
chr113407341534073432+5'-UTR,intron-Proximal5.044297.45424HepG2AQR
chr113407327334073349+5'-UTR3.086794.88807HepG2NCBP2
chr113407324934073420+5'-UTR,intron-Proximal4.5128513.23497K562FMR1
chr113407328834073417+5'-UTR3.431839.20562K562FXR2
chr113409797934098017+CDS,intron-Distal3.2677717.18724K562UCHL5
chr113411349434113540+CDS,intron-Distal3.159189.00773K562IGF2BP1
chr113411802334118083+CDS,intron-Distal,intron-Proximal3.046143.16179HepG2FXR2
chr113409798334098046+CDS,intron-Distal,intron-Proximal4.342689.97647HepG2PRPF8
chr113409801734098021+CDS,intron-Distal3.006508.25676K562UCHL5
chr113409811534098173+CDS,intron-Distal4.0187933.64549K562ZNF622
chr113407409334074167+CDS,intron-Distal4.070778.83090K562FXR2
chr113409792734097966+CDS,intron-Distal4.0470216.09505HepG2BCLAF1
chr113410766834107743+CDS,intron-Distal3.334586.62228HepG2FXR2
chr113411094134110962+CDS,intron-Distal,intron-Proximal5.2601210.12308K562IGF2BP2
chr113409810634098167+CDS,intron-Distal,intron-Proximal3.4739314.32489K562PUM1
chr113411354034113595+CDS,intron-Distal4.1987817.94313K562IGF2BP1
chr113409347234093534+CDS,intron-Distal3.275886.78893HepG2GRWD1
chr113409810834098187+CDS,intron-Distal3.626908.79196HepG2G3BP1
chr113409810634098117+CDS,intron-Distal,intron-Proximal3.488885.96568HepG2GRWD1
chr113410456234104629+CDS,intron-Distal,intron-Proximal3.539066.74002HepG2PRPF8
chr113411173034111787+CDS,intron-Distal4.408638.10313K562IGF2BP2
chr113410456234104589+CDS,intron-Distal,intron-Proximal4.7666211.54096HepG2BCLAF1
chr113409792434097981+CDS,intron-Distal3.7031118.90918K562GRWD1
chr113409816834098190+CDS,intron-Distal,intron-Proximal3.3806411.37435K562UCHL5
chr113407408734074161+CDS,intron-Distal3.029246.27353HepG2GRWD1
chr113409786234097925+CDS,intron-Distal3.3680419.85375K562ZNF622
chr113410450634104565+CDS,intron-Distal3.462595.76664HepG2G3BP1
chr113411925934119309+CDS,intron-Proximal3.537734.45816HepG2IGF2BP1
chr113411216734112193+CDS,intron-Distal3.571828.22188K562IGF2BP2
chr113411220034112224+CDS,intron-Distal4.238304.23889K562TIA1
chr113411802534118110+CDS,intron-Distal,intron-Proximal3.602898.25459HepG2G3BP1
chr113409796334098010+CDS,intron-Distal3.496668.02563HepG2GRWD1
chr113410762034107719+CDS,intron-Distal3.354614.99287K562FXR1
chr113407408834074174+CDS,intron-Distal4.545438.87911K562FMR1
chr113410435034104413+CDS,intron-Distal,intron-Proximal3.219483.87810K562U2AF2
chr113410792334107985+CDS,intron-Distal,intron-Proximal5.9215010.09256HepG2PRPF8
chr113411204434112105+CDS,intron-Distal,intron-Proximal4.671314.97857HepG2AQR
chr113409817334098185+CDS,intron-Distal3.892726.21712K562GRWD1
chr113409778234097847+CDS,intron-Distal,intron-Proximal3.0623313.41426K562PUM1
chr113411214434112192+CDS,intron-Distal4.4366217.10682K562IGF2BP1
chr113411207734112139+CDS,intron-Distal3.069243.68778HepG2IGF2BP1
chr113409797334098021+CDS,intron-Distal3.423583.80897HepG2FXR2
chr113411207634112168+CDS,intron-Distal3.149857.36369K562PUM1
chr113409347734093533+CDS,intron-Distal3.198293.46634K562IGF2BP1
chr113409778334097847+CDS,intron-Distal3.8182316.07427HepG2BCLAF1
chr113411096334111003+CDS,intron-Distal4.797814.78334K562IGF2BP2
chr113411878834118827+CDS4.478083.06406HepG2IGF2BP1
chr113409801034098022+CDS,intron-Distal,intron-Proximal3.173815.39456HepG2GRWD1
chr113410766234107743+CDS,intron-Distal3.302257.15714K562ZNF800
chr113409810534098115+CDS,intron-Distal,intron-Proximal4.0488015.90215K562ZNF622
chr113409811734098176+CDS,intron-Distal3.530369.82238HepG2GRWD1
chr113410766734107740+CDS,intron-Distal3.3104718.98792K562YBX3
chr113410455234104571+CDS,intron-Distal3.050787.35556K562PUM2
chr113411359534113603+CDS,intron-Distal4.517398.21596K562IGF2BP1
chr113411213934112205+CDS,intron-Distal3.129033.47059HepG2IGF2BP1
chr113411802334118110+CDS,intron-Distal,intron-Proximal4.663505.34770HepG2IGF2BP1
chr113411206034112081+CDS,intron-Distal,intron-Proximal3.8852016.64610K562AQR
chr113409817634098190+CDS,intron-Distal,intron-Proximal3.709014.45064HepG2GRWD1
chr113409794434097979+CDS,intron-Distal3.2973023.67420K562UCHL5
chr113411925134119309+CDS,intron-Proximal3.156725.12559K562ZNF800
chr113409798434098012+CDS,intron-Distal3.5842120.25564K562ZNF622
chr113410435134104406+CDS,intron-Distal,intron-Proximal3.121693.71466K562GPKOW
chr113409810634098162+CDS,intron-Distal,intron-Proximal3.1075613.30909K562DDX24
chr113409817334098189+CDS,intron-Distal3.3977313.10795K562ZNF622
chr113410119034101312+CDS,intron-Distal3.3866810.36526HepG2GRWD1
chr113411207634112106+CDS,intron-Distal4.091338.92556K562IGF2BP1
chr113407417834074255+CDS,intron-Distal,intron-Proximal3.768398.70001HepG2PRPF8
chr113409796634098022+CDS,intron-Distal,intron-Proximal3.3847117.20879HepG2BCLAF1
chr113409791634098022+CDS,intron-Distal,intron-Proximal3.017604.66031HepG2ZNF800
chr113411880334118844+CDS,intron-Proximal3.602933.14501HepG2IGF2BP3
chr113407402134074128+CDS,intron-Distal4.2175411.19306HepG2RPS3
chr113409810634098173+CDS,intron-Distal,intron-Proximal3.7051316.87648K562GRWD1
chr113409798134098014+CDS,intron-Distal3.3171610.10351K562GRWD1
chr113409784734097927+CDS,intron-Distal4.5967927.09140HepG2BCLAF1
chr113409778234097841+CDS,intron-Distal,intron-Proximal5.8267413.16520HepG2GRWD1
chr113409789134097916+CDS,intron-Distal4.448105.91381K562LIN28B
chr113407401934074087+CDS,intron-Distal3.8184410.13507HepG2GRWD1
chr113411210634112144+CDS,intron-Distal5.3724628.79278K562IGF2BP1
chr113409787634097927+CDS,intron-Distal3.0702023.76632K562UCHL5
chr113409792534097984+CDS,intron-Distal3.9976033.46797K562ZNF622
chr113411813134118188+CDS,intron-Proximal3.141763.71253K562LIN28B
chr113411803134118103+CDS,intron-Distal,intron-Proximal4.7820416.14072K562IGF2BP1
chr113410785234107882+CDS,intron-Distal3.431555.91405HepG2BCLAF1
chr113410450134104552+CDS,intron-Distal,intron-Proximal4.8889865.14295K562PUM2
chr113411214234112167+CDS,intron-Distal4.0622816.46518K562IGF2BP2
chr113410435134104415+CDS,intron-Distal,intron-Proximal3.207256.83989HepG2U2AF2
chr113411183534111880+CDS,intron-Distal,intron-Proximal4.0390825.08122K562AQR
chr113409811934098168+CDS,intron-Distal3.6385921.44943K562UCHL5
chr113409344634093471+CDS,intron-Distal,intron-Proximal3.178075.79905HepG2BCLAF1
chr113411816134118220+CDS,intron-Proximal3.639663.77614HepG2G3BP1
chr113409781534097831+CDS,intron-Distal3.4346712.80038K562ZNF622
chr113409784734097876+CDS,intron-Distal3.1010811.23527K562UCHL5
chr113411879534118844+CDS,intron-Proximal3.684146.80128K562IGF2BP1
chr113409785934097916+CDS,intron-Distal3.032484.30842HepG2ZNF800
chr113409811134098189+CDS,intron-Distal3.6909520.92017HepG2BCLAF1
chr113411208134112146+CDS,intron-Distal3.5886819.93524K562AQR
chr113409330334093335+CDS,intron-Distal4.427588.15024HepG2BCLAF1
chr113411802934118104+CDS,intron-Distal,intron-Proximal3.2777211.44176HepG2BCLAF1
chr113411172534111781+CDS,intron-Distal,intron-Proximal3.1087325.00436K562YBX3
chr113411924434119251+CDS,intron-Proximal4.186163.12173K562ZNF800
chr113409812234098166+CDS,intron-Distal3.037053.77213K562SND1
chr113411217534112200+CDS,intron-Distal4.584395.20806K562TIA1
chr113410761734107744+CDS,intron-Distal3.7391714.57450K562GRWD1
chr113411802434118031+CDS,intron-Distal,intron-Proximal4.251716.24329K562IGF2BP1
chr113409810834098176+CDS,intron-Distal3.358373.83898HepG2AGGF1
chr113411876834118795+CDS3.262247.49421K562IGF2BP1
chr113409784534097876+CDS,intron-Distal4.208006.39499HepG2GRWD1
chr113409801234098022+CDS,intron-Distal,intron-Proximal3.8293212.17136K562ZNF622
chr113409348234093535+CDS,intron-Distal,intron-Proximal3.511699.84433HepG2BCLAF1
chr113410775034107767+CDS,intron-Distal,intron-Proximal3.158405.79926HepG2BCLAF1
chr113409792734097944+CDS,intron-Distal3.6058022.69906K562UCHL5
chr113411219234112226+CDS,intron-Distal,intron-Proximal4.0299813.55081K562IGF2BP1
chr113411813534118188+CDS,intron-Proximal3.261193.85371K562SND1
chr113409791634097983+CDS,intron-Distal5.3206910.97206K562LIN28B
chr113410131034101359+CDS,intron-Distal,intron-Proximal4.734829.46915K562AQR
chr113410439734104424+CDS,intron-Distal3.2918611.95051K562PUM2
chr113409810634098119+CDS,intron-Distal,intron-Proximal3.2893311.75385K562UCHL5
chr113410763634107753+CDS,intron-Distal3.752765.61495HepG2ZNF800
chr113411210134112166+CDS,intron-Distal3.037876.07026HepG2GRWD1
chr113411806534118105+CDS,intron-Distal,intron-Proximal3.026115.54077K562IGF2BP2
chr113410792634107961+CDS,intron-Distal,intron-Proximal3.696048.94249K562IGF2BP2
chr113410450234104562+CDS,intron-Distal3.8631412.80995HepG2BCLAF1
chr113410441534104422+CDS,intron-Distal3.567343.68471HepG2BCLAF1
chr113411219134112225+CDS,intron-Distal3.140754.67724K562SND1
chr113411802834118090+CDS,intron-Distal,intron-Proximal3.078905.39072HepG2GRWD1
chr113411813534118219+CDS,intron-Proximal3.509517.02300K562RPS3
chr113410775434107766+CDS,intron-Distal3.410826.76685K562YBX3
chr113410761734107698+CDS,intron-Distal4.397174.66169HepG2UCHL5
chr113410804834108136+intron-Distal,intron-Proximal3.407506.59733K562KHSRP
chr113407495534075004+intron-Distal3.877486.77154K562NONO
chr113411374134113790+intron-Distal4.508394.96013K562PRPF8
chr113410031334100420+intron-Distal3.143745.28181HepG2MATR3
chr113407427134074325+intron-Distal,intron-Proximal3.539134.43405HepG2EFTUD2
chr113407427534074379+intron-Distal,intron-Proximal3.672816.32455K562NONO
chr113407797434078104+intron-Distal,intron-Proximal3.094085.60908K562RBFOX2
chr113410030234100410+intron-Distal3.868883.89405HepG2PTBP1
chr113409606434096129+intron-Distal3.376873.69083K562PTBP1
chr113410110134101151+intron-Distal,intron-Proximal3.370884.35650K562KHSRP
chr113411204334112058+intron-Distal,intron-Proximal3.8714811.47097K562AQR
chr113407427134074360+intron-Distal,intron-Proximal3.131335.57830K562TIA1
chr113411199334112047+intron-Distal,intron-Proximal3.334714.13575K562KHSRP
chr113410464834104672+intron-Distal,intron-Proximal3.808093.64144K562EFTUD2
chr113410018134100425+intron-Distal3.606329.98280K562MATR3
chr113411188034111915+intron-Distal,intron-Proximal4.8854110.60410K562AQR
chr113410006634100130+intron-Distal4.9632010.02898K562PTBP1
chr113409964334099714+intron-Distal3.314133.51714HepG2QKI
chr113407884234078905+intron-Distal3.8627111.49732K562TARDBP
chr113409986234099909+intron-Distal3.977618.55689HepG2U2AF2
chr113411246934112576+intron-Distal4.645959.78867HepG2QKI
chr113409606634096143+intron-Distal4.103623.41738HepG2PTBP1
chr113407793534077974+intron-Distal,intron-Proximal4.821336.81444K562RBFOX2
chr113407442934074471+intron-Distal4.296678.90822K562TIA1
chr113407418734074255+intron-Distal,intron-Proximal3.247674.49099HepG2EFTUD2
chr113410461534104670+intron-Distal,intron-Proximal4.642786.97875K562RBM22
chr113407420934074249+intron-Distal,intron-Proximal4.040353.02324K562XRN2
chr113408018634080272+intron-Distal3.9484811.38992K562ZRANB2
chr113410005634100128+intron-Distal4.015273.62025K562MATR3
chr113411246434112579+intron-Distal3.638877.12596K562QKI
chr113410470234104759+intron-Distal3.736504.93376K562PRPF8
chr113407671734076776+intron-Distal3.085734.83241HepG2HNRNPC
chr113407483334074873+intron-Distal3.263525.38993K562NONO
chr113407791234078006+intron-Distal,intron-Proximal3.890225.40624K562KHSRP
chr113410047834100540+intron-Distal3.545278.10682K562KHSRP
chr113407428434074339+intron-Distal3.312513.48123K562XRN2
chr113408144434081496+intron-Distal3.263544.19942HepG2HNRNPC
chr113410258234102680+intron-Distal3.600914.13620K562KHSRP
chr113410028834100417+intron-Distal3.5567511.60059K562PTBP1
chr113407508834075133+intron-Distal,intron-Proximal3.595405.32871HepG2CSTF2T
chr113411102834111109+intron-Distal,intron-Proximal4.834625.66249K562TIA1
chr113407494734075058+intron-Distal3.213514.12745K562EWSR1
chr113410099034101071+intron-Distal3.715279.94478K562KHSRP
chr113410444134104494+intron-Distal,intron-Proximal4.419405.29549HepG2EFTUD2
chr113409938334099439+intron-Distal3.721619.62501K562KHSRP
chr113410088434100948+intron-Distal3.991983.47885K562LIN28B
chr113409939234099470+intron-Distal4.227244.26925HepG2KHSRP
chr113411233334112464+intron-Distal4.4674314.32625HepG2QKI
chr113411363434113696+intron-Distal,intron-Proximal3.689344.35285K562RBM22
chr113409358934093652+intron-Distal,intron-Proximal3.433484.07440K562PRPF8
chr113409972034099779+intron-Distal3.455413.42396HepG2U2AF2
chr113410469434104796+intron-Distal4.426524.26925HepG2KHSRP
chr113407544534075502+intron-Distal4.325853.72398HepG2SFPQ
chr113407418734074254+intron-Distal,intron-Proximal3.399907.70675K562AQR
chr113411827834118325+intron-Distal,intron-Proximal4.986076.04760K562AQR
chr113411829734118382+intron-Distal,intron-Proximal4.4237810.39396K562KHSRP
chr113410131434101354+intron-Distal,intron-Proximal4.176913.85435K562PRPF8
chr113407342434073467+intron-Proximal5.8918712.15317HepG2PRPF8
chr113407343234073455+intron-Proximal5.117717.45424HepG2AQR
chr113407344734073462+intron-Proximal6.1644111.56697K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CAPRIN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CAPRIN1 is not available on ENCORE database.

  • 102 RBPs can affect the levels of CAPRIN1.  








The Knockdown/knockout RNA-Seq assay for CAPRIN1 is not available on ENCORE database.





102 RBPs can affect the gene expression of CAPRIN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CAPRIN1ENSG00000135387.156267.063405370.746600.222603.964803.26150HepG2ACO1
CAPRIN1ENSG00000135387.153532.547306302.54370-0.8352011.3885010.38040HepG2AKAP1
CAPRIN1ENSG00000135387.157044.152308493.30270-0.269905.085304.20080HepG2AUH
CAPRIN1ENSG00000135387.153681.929605443.38670-0.564004.874303.62550HepG2BCCIP
CAPRIN1ENSG00000135387.152791.420904730.34780-0.760907.320805.93930HepG2BCLAF1
CAPRIN1ENSG00000135387.156296.732108199.03780-0.380904.348803.61810HepG2BOP1
CAPRIN1ENSG00000135387.155896.712707119.18370-0.271803.344902.50690HepG2CALR
CAPRIN1ENSG00000135387.155940.901009630.96060-0.697007.330005.72200HepG2CCAR1
CAPRIN1ENSG00000135387.152242.069703863.48110-0.785106.377705.21590HepG2CNOT7
CAPRIN1ENSG00000135387.154200.531405286.72900-0.331805.353803.93980HepG2YBX3
CAPRIN1ENSG00000135387.157921.572507040.537200.170002.005001.44100HepG2CELF1
CAPRIN1ENSG00000135387.154995.451807570.32040-0.5997029.3096027.39400HepG2DAZAP1
CAPRIN1ENSG00000135387.153560.763704967.11890-0.4802015.2279013.61880HepG2DDX19B
CAPRIN1ENSG00000135387.154437.890805294.05230-0.254503.316002.04900HepG2DDX1
CAPRIN1ENSG00000135387.154113.654906037.46570-0.553506.317405.41010HepG2DDX3X
CAPRIN1ENSG00000135387.153038.982605186.05900-0.771109.810708.72440HepG2DDX6
CAPRIN1ENSG00000135387.153944.507305006.83440-0.344103.633002.51680HepG2DHX30
CAPRIN1ENSG00000135387.153870.390705191.09650-0.423608.451807.27600HepG2DNAJC21
CAPRIN1ENSG00000135387.153942.244305145.36690-0.3843011.4972010.26790HepG2DNAJC2
CAPRIN1ENSG00000135387.153312.209104985.73140-0.590007.113506.19530HepG2EIF2S1
CAPRIN1ENSG00000135387.154246.457405509.93880-0.375802.755602.11750HepG2EIF4A3
CAPRIN1ENSG00000135387.156390.100107468.57340-0.225003.701902.75730HepG2EIF4G1
CAPRIN1ENSG00000135387.154727.352507154.41750-0.597809.029307.59560HepG2EIF4G2
CAPRIN1ENSG00000135387.156081.668309751.59140-0.6812027.7356026.16460HepG2ETF1
CAPRIN1ENSG00000135387.152492.985003184.79260-0.353304.329402.83960HepG2FAM120A
CAPRIN1ENSG00000135387.154772.358307540.00080-0.659902.850201.81980HepG2FTO
CAPRIN1ENSG00000135387.153968.957105156.91820-0.377702.973402.28490HepG2G3BP1
CAPRIN1ENSG00000135387.155712.876508532.85740-0.578806.649505.68610HepG2GPKOW
CAPRIN1ENSG00000135387.154137.452605127.45660-0.309505.699004.35140HepG2HDGF
CAPRIN1ENSG00000135387.153823.202605240.82980-0.455006.386505.46410HepG2HNRNPA1
CAPRIN1ENSG00000135387.155929.686606957.33440-0.230603.507402.47300HepG2HNRNPA2B1
CAPRIN1ENSG00000135387.153874.842505829.49060-0.589209.705508.47370HepG2HNRNPC
CAPRIN1ENSG00000135387.155589.654607367.44990-0.398409.915208.66320HepG2HNRNPF
CAPRIN1ENSG00000135387.154870.852806895.98680-0.5016021.3218019.62350HepG2HNRNPL
CAPRIN1ENSG00000135387.155419.721708143.04820-0.587408.067607.05550HepG2HNRNPLL
CAPRIN1ENSG00000135387.154028.408105790.94680-0.5236016.1196014.75270HepG2HNRNPU
CAPRIN1ENSG00000135387.155145.364507254.80320-0.495709.386708.12460HepG2IGF2BP1
CAPRIN1ENSG00000135387.155141.969005915.25420-0.202103.860003.00870HepG2ILF2
CAPRIN1ENSG00000135387.153624.197804909.46520-0.4379014.4073012.31640HepG2KIF1C
CAPRIN1ENSG00000135387.155605.132208304.49330-0.567104.198302.99070HepG2MTPAP
CAPRIN1ENSG00000135387.154016.341005004.10640-0.317203.111601.82050HepG2NAA15
CAPRIN1ENSG00000135387.155927.165307506.71340-0.340804.217503.27620HepG2NOL12
CAPRIN1ENSG00000135387.152800.906004913.05040-0.810705.275003.73970HepG2NONO
CAPRIN1ENSG00000135387.155678.263107220.25080-0.346603.604602.75070HepG2NSUN2
CAPRIN1ENSG00000135387.154166.211205097.66290-0.291102.052501.42260HepG2PABPC4
CAPRIN1ENSG00000135387.154843.108605732.00040-0.243103.799102.82480HepG2PARN
CAPRIN1ENSG00000135387.156023.127905181.922500.216903.233102.58640HepG2PCBP1
CAPRIN1ENSG00000135387.153642.560705165.05550-0.5038011.155409.73170HepG2PPIL4
CAPRIN1ENSG00000135387.153145.072204129.76190-0.393002.862402.03950HepG2PRPF8
CAPRIN1ENSG00000135387.155648.960707165.81060-0.343104.019603.31550HepG2PUF60
CAPRIN1ENSG00000135387.156275.025907606.81930-0.277707.534706.65580HepG2PUM1
CAPRIN1ENSG00000135387.155266.072807601.26610-0.5295010.945909.66120HepG2PUM2
CAPRIN1ENSG00000135387.155030.660005710.63200-0.182901.891601.35980HepG2QKI
CAPRIN1ENSG00000135387.155118.163108156.54980-0.6723016.6893014.87630HepG2RBM15
CAPRIN1ENSG00000135387.156919.608405868.104000.237703.778503.16500HepG2NELFE
CAPRIN1ENSG00000135387.154623.117107937.02360-0.7797016.8688015.46270HepG2RPLP0
CAPRIN1ENSG00000135387.153435.061804994.63930-0.540003.616402.53670HepG2RPS10
CAPRIN1ENSG00000135387.152823.102703879.00940-0.458403.151702.29870HepG2RPS3A
CAPRIN1ENSG00000135387.153184.978605157.07280-0.6953031.0517029.22580HepG2SAFB2
CAPRIN1ENSG00000135387.155216.618908060.10340-0.6277010.387909.10040HepG2SF3B1
CAPRIN1ENSG00000135387.155474.118806870.88480-0.327909.228008.06470HepG2SLBP
CAPRIN1ENSG00000135387.153156.222005183.99180-0.715906.843205.28170HepG2SMNDC1
CAPRIN1ENSG00000135387.156590.571308968.24460-0.444402.664701.89800HepG2SNRNP70
CAPRIN1ENSG00000135387.156784.600909205.63250-0.4403015.2294014.30300HepG2SRFBP1
CAPRIN1ENSG00000135387.1510979.498205730.025100.9381060.7109059.14380HepG2SRSF1
CAPRIN1ENSG00000135387.155488.378807238.38580-0.3993010.167508.97890HepG2SRSF7
CAPRIN1ENSG00000135387.155831.813707992.57620-0.4547014.1403013.16140HepG2SSB
CAPRIN1ENSG00000135387.153668.293004972.26250-0.438805.616504.30110HepG2SUPT6H
CAPRIN1ENSG00000135387.154047.717505327.95540-0.396502.723602.05090HepG2SUPV3L1
CAPRIN1ENSG00000135387.155882.901807936.51710-0.432005.191704.24310HepG2TARDBP
CAPRIN1ENSG00000135387.153808.333604732.50480-0.313403.720302.75760HepG2TIA1
CAPRIN1ENSG00000135387.153036.683105626.85040-0.8898027.3378026.06650HepG2TIAL1
CAPRIN1ENSG00000135387.153781.700305677.29690-0.5862019.5631018.23660HepG2TRIM56
CAPRIN1ENSG00000135387.151905.957203147.65100-0.723808.246906.93570HepG2UCHL5
CAPRIN1ENSG00000135387.155116.058406228.68450-0.283905.878004.92120HepG2UPF1
CAPRIN1ENSG00000135387.152205.990604879.79300-1.1454013.4712011.17240HepG2UPF2
CAPRIN1ENSG00000135387.157738.171606013.557000.363709.407208.40960HepG2UTP3
CAPRIN1ENSG00000135387.152565.871103474.40980-0.437302.759201.66580HepG2XPO5
CAPRIN1ENSG00000135387.153619.072305244.77620-0.535304.878603.92360HepG2XRN2
CAPRIN1ENSG00000135387.154964.280206850.36700-0.4646019.0057017.88790HepG2ZNF622
CAPRIN1ENSG00000135387.159441.019807719.282500.290402.885301.67610K562AARS
CAPRIN1ENSG00000135387.1516995.1512012153.210100.4837017.3308016.03160K562AGGF1
CAPRIN1ENSG00000135387.156921.823708122.95210-0.230903.043901.46040K562AKAP1
CAPRIN1ENSG00000135387.1515127.1535012646.038200.258402.525501.90080K562AKAP8L
CAPRIN1ENSG00000135387.159251.1533012954.83780-0.485807.344506.46280K562AQR
CAPRIN1ENSG00000135387.1515583.4088013268.874900.231903.241802.24840K562ATP5C1
CAPRIN1ENSG00000135387.157268.724408238.56700-0.180702.658001.71780K562BCLAF1
CAPRIN1ENSG00000135387.153031.427004916.26070-0.6976011.020508.47040K562CCAR1
CAPRIN1ENSG00000135387.1516424.8930013607.589700.271404.664203.48070K562DKC1
CAPRIN1ENSG00000135387.156104.759607712.68220-0.337303.061002.09910K562EFTUD2
CAPRIN1ENSG00000135387.158279.2033010351.01980-0.322205.868804.87950K562EIF2S2
CAPRIN1ENSG00000135387.156974.910208599.37970-0.302102.927502.08350K562EIF4A3
CAPRIN1ENSG00000135387.159098.8135012297.18930-0.434605.604304.37230K562FIP1L1
CAPRIN1ENSG00000135387.158334.6554010329.95460-0.309602.923002.04290K562FMR1
CAPRIN1ENSG00000135387.159417.7014013793.87040-0.5506010.440508.94560K562GRSF1
CAPRIN1ENSG00000135387.156215.077708446.64380-0.442606.792505.89640K562HNRNPC
CAPRIN1ENSG00000135387.1512219.7644016672.69570-0.448305.852204.70780K562HSPD1
CAPRIN1ENSG00000135387.1518344.7334015034.221600.287003.250402.25120K562MBNL1
CAPRIN1ENSG00000135387.158013.374709461.58640-0.239702.221701.43750K562METAP2
CAPRIN1ENSG00000135387.159848.0685011617.92210-0.238404.732003.69740K562MTPAP
CAPRIN1ENSG00000135387.1513880.0363010537.922800.397302.540001.70270K562NAA15
CAPRIN1ENSG00000135387.155132.100707598.68720-0.566206.876104.66520K562NONO
CAPRIN1ENSG00000135387.1510402.3290013959.41540-0.424305.009403.85180K562PPIG
CAPRIN1ENSG00000135387.156082.446407505.31920-0.303302.624601.89380K562PRPF8
CAPRIN1ENSG00000135387.155740.761607573.27670-0.399704.889103.64310K562PSIP1
CAPRIN1ENSG00000135387.1516609.7108020490.53150-0.302905.401904.04040K562PUM2
CAPRIN1ENSG00000135387.1517906.5633012540.884100.513707.575206.72270K562PUS1
CAPRIN1ENSG00000135387.1513913.7281012219.629800.187202.274601.72790K562RBM15
CAPRIN1ENSG00000135387.157599.4758010269.59160-0.434404.916703.53590K562RPS3
CAPRIN1ENSG00000135387.158664.5520012737.48160-0.5559016.0427014.21090K562SF3A3
CAPRIN1ENSG00000135387.157766.330509093.97420-0.227702.471201.66530K562SF3B4
CAPRIN1ENSG00000135387.1510852.6545013049.83360-0.266007.082305.66070K562SRPK2
CAPRIN1ENSG00000135387.158422.112809914.63680-0.235402.364101.40230K562SRSF4
CAPRIN1ENSG00000135387.157628.912609626.65890-0.335603.114802.36450K562TARDBP
CAPRIN1ENSG00000135387.156164.686907691.22390-0.319202.688101.68650K562UCHL5
CAPRIN1ENSG00000135387.158359.7207010767.39490-0.365104.749402.56430K562UPF2
CAPRIN1ENSG00000135387.159847.9249013126.97400-0.414603.713202.31000K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CAPRIN1 is not available on ENCORE database.





9 RBPs can affect the splicing of CAPRIN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECAPRIN1ENSG00000135387.15chr11+341045013410458834104371341044243410761034107766-0.107000.000000.00000excludedHepG2U2AF1
SECAPRIN1ENSG00000135387.15chr11+341045013410458834104371341044243410761034107766-0.158000.000000.00000excludedHepG2U2AF2
SECAPRIN1ENSG00000135387.15chr11+341043713410442434101174341013123410761034107766-0.061000.000000.00000excludedK562AQR
SECAPRIN1ENSG00000135387.15chr11+341043713410442434101174341013123410761034107766-0.100000.000000.00000excludedK562PUS1
SECAPRIN1ENSG00000135387.15chr11+341192323411930834118742341188433412084934120879-0.055000.001320.02805excludedK562U2AF1
SECAPRIN1ENSG00000135387.15chr11+341045123410458834104371341044243410761034107766-0.074000.000060.00223excludedK562U2AF1
SECAPRIN1ENSG00000135387.15chr11+341134193411360334112051341122253411802534118172-0.072000.000000.00005excludedHepG2SF3A3
SECAPRIN1ENSG00000135387.15chr11+341045013410458834101174341013123410761034107766-0.068000.000000.00000excludedK562UTP18
SECAPRIN1ENSG00000135387.15chr11+341045013410458834104371341044243410761034107766-0.092000.000000.00000excludedK562U2AF2
SECAPRIN1ENSG00000135387.15chr11+341043713410442434101174341013123410761034107766-0.077000.000000.00000excludedK562RBM15
SECAPRIN1ENSG00000135387.15chr11+341045013410458834104371341044243410761034107766-0.060000.000000.00006excludedK562SF3B1
A3SSCAPRIN1ENSG00000135387.15chr11+3409342034093534340934473409353434093155340933350.086000.000000.00000longerK562AQR
MXECAPRIN1ENSG00000135387.15chr11+34112075341122253411345234113603341117253411183634118025341182200.056000.000370.024341includedK562SF3B1
MXECAPRIN1ENSG00000135387.15chr11+34112138341122253411345234113603341117253411183634118025341182200.052000.000000.000001includedK562U2AF2
MXECAPRIN1ENSG00000135387.15chr11+34112075341122253411345234113603341117253411183634118025341182200.091000.001600.023101includedK562U2AF2
MXECAPRIN1ENSG00000135387.15chr11+3411207534112225341134523411360334111725341118363411802534118220-0.054000.000020.002172includedK562FXR2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CAPRIN1 is not avaliable on ENCORE database.