BORA

General Information

Gene Name : BORA
Gene ID : ENSG00000136122.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BORA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BORA	ENSG00000136122.15	25.67	21.09	23.38	ENCSR000AEF
HepG2	BORA	ENSG00000136122.15	8.68	16.31	12.49	ENCSR985KAT
K562	BORA	ENSG00000136122.15	13.93	14.47	14.20	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BORA is not avaliable on ENCORE database.

Proteins bound to RNA

BORA RNA is bound by 6 proteins.

CanvasJS.com

eCLIP assay for BORA is not avaliable on ENCORE database.

6 proteins are bound to BORA RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	73322940	73323050	+	intron-Distal	5.60183	12.57135	HepG2	QKI
chr13	73322948	73323086	+	intron-Distal	6.41817	12.53103	K562	QKI
chr13	73315622	73315725	+	intron-Distal	3.70264	10.29051	K562	KHSRP
chr13	73323173	73323262	+	intron-Distal	5.27859	9.77283	HepG2	QKI
chr13	73312100	73312185	+	CDS,intron-Proximal	3.58617	7.42773	K562	BUD13
chr13	73315566	73315622	+	intron-Distal	4.21003	6.83037	K562	KHSRP
chr13	73312368	73312461	+	intron-Distal	3.61471	5.35459	K562	KHSRP
chr13	73305498	73305577	+	CDS,intron-Distal,intron-Proximal	4.55968	4.85612	K562	PRPF8
chr13	73303231	73303271	+	intron-Distal,intron-Proximal	3.86059	4.00320	K562	AQR
chr13	73323187	73323252	+	intron-Distal	4.99881	3.78039	K562	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 12 entries

eCLIP assay for BORA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BORA is not available on ENCORE database.
116 RBPs can affect the levels of BORA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BORA is not available on ENCORE database.

116 RBPs can affect the gene expression of BORA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BORA	ENSG00000136122.11	126.59800	499.85350	-1.98130	37.86450	36.56660	HepG2	SRFBP1
BORA	ENSG00000136122.11	36.06450	314.37260	-3.12380	34.95170	33.07290	HepG2	SUPV3L1
BORA	ENSG00000136122.11	55.33180	340.55090	-2.62170	33.11530	31.44370	HepG2	BOP1
BORA	ENSG00000136122.11	93.24000	397.81960	-2.09310	27.76320	26.09180	HepG2	RPLP0
BORA	ENSG00000136122.11	180.33630	529.47840	-1.55390	26.99340	25.44350	HepG2	ETF1
BORA	ENSG00000136122.11	145.83620	442.55090	-1.60150	22.95450	21.75340	HepG2	RBM22
BORA	ENSG00000136122.11	90.25530	328.22060	-1.86260	22.86270	21.68600	HepG2	TIAL1
BORA	ENSG00000136122.11	205.52800	465.06320	-1.17810	18.46960	16.86220	HepG2	DAZAP1
BORA	ENSG00000136122.11	197.38730	461.18470	-1.22430	17.33280	15.88260	HepG2	AUH
BORA	ENSG00000136122.11	1433.74210	695.75540	1.04300	17.02520	15.71930	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 128 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BORA is not available on ENCORE database.

16 RBPs can affect the splicing of BORA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	BORA	ENSG00000136122.11	chr13	+	73305418	73305525			73303063	73303231	73309097	73309174	0.30800	0.00000	0.00015	included	K562	SRSF1
SE	BORA	ENSG00000136122.11	chr13	+	73305418	73305525			73303063	73303231	73312099	73312181	-0.31100	0.00000	0.00003	excluded	K562	SF3B4
SE	BORA	ENSG00000136122.11	chr13	+	73305418	73305525			73303063	73303231	73312099	73312181	-0.31600	0.00000	0.00024	excluded	K562	AKAP8L
SE	BORA	ENSG00000136122.11	chr13	+	73305418	73305525			73303063	73303231	73312099	73312181	-0.34800	0.00000	0.00000	excluded	K562	U2AF2
A3SS	BORA	ENSG00000136122.11	chr13	+	73329267	73329466			73329288	73329466	73327789	73327959	0.10100	0.00000	0.00000	longer	K562	AQR
MXE	BORA	ENSG00000136122.11	chr13	+	73303063	73303231	73305418	73305525	73302060	73302145	73309097	73309143	-0.27000	0.00000	0.00049	2included	K562	PTBP1
MXE	BORA	ENSG00000136122.11	chr13	+	73305418	73305525	73309097	73309174	73303063	73303231	73312099	73312181	0.26500	0.00000	0.00005	1included	K562	SRSF1
SE	BORA	ENSG00000136122.11	chr13	+	73305418	73305525			73303063	73303231	73312099	73312181	-0.51900	0.00002	0.00046	excluded	HepG2	U2AF2
MXE	BORA	ENSG00000136122.11	chr13	+	73303063	73303231	73305418	73305525	73302060	73302145	73309097	73309143	0.21000	0.00005	0.00367	1included	K562	AGGF1
SE	BORA	ENSG00000136122.11	chr13	+	73305418	73305525			73303063	73303231	73312099	73312181	-0.30100	0.00007	0.00118	excluded	K562	AQR

Showing 1 to 10 of 32 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BORA

General Information

Functions

Localization

Domains (AlphaFold: BORA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BORA is not avaliable on ENCORE database.

6 proteins are bound to BORA RNA:

eCLIP assay for BORA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BORA is not available on ENCORE database.

116 RBPs can affect the gene expression of BORA :

The Knockdown/knockout RNA-Seq assay for BORA is not available on ENCORE database.

16 RBPs can affect the splicing of BORA :

The Knockdown/knockout RNA-Seq assay for BORA is not avaliable on ENCORE database.