| chr12 | 89984531 | 89984614 | - | 3'-UTR,intron-Distal,intron-Proximal | 5.51185 | 8.14495 | K562 | CPEB4 |
| chr12 | 89983062 | 89983152 | - | 3'-UTR,intron-Distal | 3.24168 | 7.31936 | HepG2 | PTBP1 |
| chr12 | 89983637 | 89983715 | - | 3'-UTR,intron-Distal | 4.42583 | 8.88184 | HepG2 | LIN28B |
| chr12 | 89984552 | 89984672 | - | 3'-UTR,intron-Distal,intron-Proximal | 4.62812 | 21.84731 | K562 | PUM2 |
| chr12 | 90049861 | 90049884 | - | 3'-UTR,5'-UTR,intron-Distal,intron-Proximal | 3.49859 | 3.27569 | HepG2 | BCLAF1 |
| chr12 | 89982102 | 89982186 | - | 3'-UTR,intron-Distal | 3.80308 | 8.47986 | K562 | PUM2 |
| chr12 | 89984250 | 89984362 | - | 3'-UTR,intron-Distal | 3.53974 | 4.03249 | HepG2 | FUBP3 |
| chr12 | 89984520 | 89984608 | - | 3'-UTR,intron-Distal,intron-Proximal | 3.88246 | 5.68843 | K562 | DDX6 |
| chr12 | 90102535 | 90102604 | - | 5'-UTR,intron-Distal | 4.25166 | 30.17268 | HepG2 | DDX3X |
| chr12 | 90102995 | 90103076 | - | 5'-UTR,intron-Distal | 3.78990 | 6.82597 | K562 | DDX3X |
| chr12 | 90102997 | 90103075 | - | 5'-UTR,intron-Distal | 4.91232 | 33.50972 | HepG2 | DDX3X |
| chr12 | 90102463 | 90102535 | - | 5'-UTR,intron-Distal | 4.34170 | 29.96043 | HepG2 | DDX3X |
| chr12 | 90004235 | 90004317 | - | CDS,intron-Distal,intron-Proximal | 4.27672 | 6.59856 | K562 | SF3B4 |
| chr12 | 90015493 | 90015552 | - | CDS,intron-Distal | 4.09784 | 6.22576 | HepG2 | BCLAF1 |
| chr12 | 90010690 | 90010811 | - | CDS,intron-Distal | 4.78741 | 5.78061 | HepG2 | LIN28B |
| chr12 | 90020282 | 90020391 | - | CDS,intron-Distal | 3.42786 | 3.47312 | HepG2 | FXR2 |
| chr12 | 90004969 | 90005059 | - | CDS,intron-Distal,intron-Proximal | 3.94882 | 8.51432 | HepG2 | BCLAF1 |
| chr12 | 90021454 | 90021487 | - | CDS,intron-Distal,intron-Proximal | 4.93056 | 5.68196 | HepG2 | BCLAF1 |
| chr12 | 90035931 | 90035980 | - | CDS,intron-Distal,intron-Proximal | 4.25026 | 7.49468 | HepG2 | BCLAF1 |
| chr12 | 90024373 | 90024423 | - | CDS,intron-Distal,intron-Proximal | 3.07309 | 6.09950 | HepG2 | BCLAF1 |
| chr12 | 90003753 | 90003815 | - | CDS,intron-Distal | 3.14938 | 5.00751 | HepG2 | BCLAF1 |
| chr12 | 90003714 | 90003731 | - | CDS,intron-Distal | 3.46914 | 3.87469 | HepG2 | BCLAF1 |
| chr12 | 90010575 | 90010623 | - | CDS,intron-Distal,intron-Proximal | 4.19749 | 6.22576 | HepG2 | BCLAF1 |
| chr12 | 90035993 | 90036063 | - | CDS,intron-Distal | 4.31936 | 7.16838 | HepG2 | BCLAF1 |
| chr12 | 90028798 | 90029028 | - | CDS,intron-Distal | 3.29028 | 3.78503 | K562 | FUS |
| chr12 | 90020229 | 90020278 | - | CDS,intron-Distal,intron-Proximal | 5.17384 | 6.13315 | HepG2 | BCLAF1 |
| chr12 | 90020235 | 90020317 | - | CDS,intron-Distal | 4.23465 | 3.43980 | K562 | ZNF622 |
| chr12 | 90028933 | 90029027 | - | CDS,intron-Distal | 3.22508 | 5.41277 | K562 | UCHL5 |
| chr12 | 90028902 | 90029029 | - | CDS,intron-Distal,intron-Proximal | 3.70159 | 11.46441 | HepG2 | BCLAF1 |
| chr12 | 90005008 | 90005117 | - | CDS,intron-Distal | 4.06460 | 3.72865 | HepG2 | LIN28B |
| chr12 | 90020333 | 90020396 | - | CDS,intron-Distal,intron-Proximal | 3.19301 | 5.01560 | K562 | UCHL5 |
| chr12 | 90018151 | 90018173 | - | CDS,intron-Distal | 4.63011 | 3.89826 | HepG2 | BCLAF1 |
| chr12 | 90021445 | 90021488 | - | CDS,intron-Distal,intron-Proximal | 3.07449 | 3.84692 | K562 | UCHL5 |
| chr12 | 90010582 | 90010642 | - | CDS,intron-Distal | 3.46308 | 3.31745 | K562 | ZNF622 |
| chr12 | 90028626 | 90028684 | - | CDS,intron-Distal,intron-Proximal | 3.64436 | 4.49887 | K562 | ZNF622 |
| chr12 | 90024289 | 90024381 | - | CDS,intron-Distal | 3.78911 | 5.47804 | K562 | ZNF622 |
| chr12 | 90010660 | 90010719 | - | CDS,intron-Distal | 4.00755 | 5.36555 | HepG2 | BCLAF1 |
| chr12 | 90024280 | 90024355 | - | CDS,intron-Distal,intron-Proximal | 3.03376 | 3.42645 | HepG2 | AQR |
| chr12 | 90024296 | 90024373 | - | CDS,intron-Distal | 4.69681 | 10.64218 | HepG2 | BCLAF1 |
| chr12 | 90020310 | 90020394 | - | CDS,intron-Distal,intron-Proximal | 5.54655 | 7.95223 | HepG2 | BCLAF1 |
| chr12 | 90049316 | 90049434 | - | CDS,intron-Distal,intron-Proximal | 4.62182 | 4.72162 | K562 | KHSRP |
| chr12 | 90004206 | 90004285 | - | CDS,intron-Distal | 5.77281 | 12.54237 | HepG2 | BCLAF1 |
| chr12 | 90028788 | 90028902 | - | CDS,intron-Distal | 3.32244 | 9.25770 | HepG2 | BCLAF1 |
| chr12 | 89993216 | 89993277 | - | intron-Distal | 4.56982 | 3.35169 | HepG2 | U2AF2 |
| chr12 | 90102066 | 90102147 | - | intron-Distal | 4.46289 | 5.42636 | K562 | NONO |
| chr12 | 90073966 | 90074021 | - | intron-Distal | 3.81407 | 5.77184 | K562 | HNRNPM |
| chr12 | 90073477 | 90073544 | - | intron-Distal | 4.64523 | 5.15027 | HepG2 | MATR3 |
| chr12 | 89992241 | 89992318 | - | intron-Distal,intron-Proximal | 3.86355 | 3.16986 | HepG2 | QKI |
| chr12 | 90039332 | 90039431 | - | intron-Distal | 4.20390 | 8.56181 | HepG2 | SUGP2 |
| chr12 | 90040454 | 90040512 | - | intron-Distal | 4.18003 | 3.84389 | HepG2 | SUGP2 |
| chr12 | 90101802 | 90101873 | - | intron-Distal | 4.10896 | 3.07008 | K562 | NONO |
| chr12 | 90013652 | 90013770 | - | intron-Distal,intron-Proximal | 3.10107 | 4.83983 | K562 | KHSRP |
| chr12 | 90004845 | 90004930 | - | intron-Distal,intron-Proximal | 4.96181 | 4.83371 | K562 | EFTUD2 |
| chr12 | 90039352 | 90039521 | - | intron-Distal | 5.30917 | 8.95589 | HepG2 | MATR3 |
| chr12 | 90040164 | 90040277 | - | intron-Distal | 4.05952 | 7.95181 | HepG2 | SUGP2 |
| chr12 | 90074522 | 90074576 | - | intron-Distal | 4.15435 | 4.10336 | HepG2 | SUGP2 |
| chr12 | 90102147 | 90102271 | - | intron-Distal | 4.04750 | 7.72512 | K562 | NONO |
| chr12 | 90041399 | 90041503 | - | intron-Distal | 3.38262 | 4.63615 | HepG2 | HNRNPL |
| chr12 | 90081424 | 90081540 | - | intron-Distal | 3.25357 | 3.35585 | HepG2 | QKI |
| chr12 | 90101573 | 90101643 | - | intron-Distal | 3.25216 | 4.01575 | K562 | NONO |
| chr12 | 90042267 | 90042344 | - | intron-Distal | 4.53063 | 5.83842 | HepG2 | SUGP2 |