ABLIM1

General Information

Gene Name       : ABLIM1
Gene ID             : ENSG00000099204.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ABLIM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ABLIM1ENSG00000099204.1940.0134.3837.20ENCSR000AEF
HepG2ABLIM1ENSG00000099204.1960.0386.9073.47ENCSR985KAT
K562ABLIM1ENSG00000099204.190.020.040.03ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ABLIM1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ABLIM1 RNA is bound by 19 proteins.  







eCLIP assay for ABLIM1 is not avaliable on ENCORE database.





19 proteins are bound to ABLIM1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10116197614116197752-3'-UTR,CDS,intron-Distal,intron-Proximal3.039793.30959HepG2AQR
chr10116192124116192193-3'-UTR,intron-Distal3.564605.54154HepG2LIN28B
chr10116193159116193249-3'-UTR,intron-Distal3.297243.75909HepG2IGF2BP1
chr10116194016116194097-3'-UTR,intron-Distal3.191224.12427HepG2IGF2BP1
chr10116193397116193476-3'-UTR,intron-Distal4.928954.01886HepG2LIN28B
chr10116195487116195572-3'-UTR,intron-Distal3.627478.29143HepG2LIN28B
chr10116192859116192924-3'-UTR,intron-Distal3.898617.16393HepG2LIN28B
chr10116195379116195466-3'-UTR,intron-Distal3.722033.10765HepG2YBX3
chr10116286432116286539-5'-UTR,intron-Distal4.6253710.59420HepG2GRWD1
chr10116286447116286508-5'-UTR,intron-Distal3.666084.25624HepG2DDX3X
chr10116251504116251591-5'-UTR,CDS,intron-Distal,intron-Proximal5.6038819.90075HepG2PRPF8
chr10116286416116286505-5'-UTR,intron-Distal3.105656.91034HepG2BCLAF1
chr10116286508116286568-5'-UTR,intron-Distal3.705105.90734HepG2DDX3X
chr10116286413116286432-5'-UTR,intron-Distal4.130084.45558HepG2GRWD1
chr10116211395116211419-CDS,intron-Distal,intron-Proximal3.965544.09794HepG2IGF2BP1
chr10116247674116247767-CDS,intron-Distal,intron-Proximal3.9926819.24538HepG2PRPF8
chr10116211337116211388-CDS,intron-Distal,intron-Proximal4.914055.01842HepG2PRPF8
chr10116200774116200835-CDS,intron-Distal,intron-Proximal3.330555.80517HepG2GRWD1
chr10116201479116201545-CDS,intron-Distal,intron-Proximal3.699599.49961HepG2GRWD1
chr10116207755116207860-CDS,intron-Distal,intron-Proximal4.118724.57180HepG2AQR
chr10116211419116211431-CDS,intron-Distal,intron-Proximal3.288983.61668HepG2IGF2BP1
chr10116200729116200806-CDS,intron-Distal,intron-Proximal3.3737711.14388HepG2PRPF8
chr10116198902116198961-CDS,intron-Distal,intron-Proximal3.115233.13570HepG2BUD13
chr10116233649116233687-CDS,intron-Distal4.442153.82843HepG2PPIG
chr10116232735116232856-CDS,intron-Distal,intron-Proximal3.000967.78685HepG2GRWD1
chr10116205065116205148-CDS,intron-Distal,intron-Proximal3.802379.30518HepG2PPIG
chr10116225455116225536-CDS,intron-Distal,intron-Proximal3.202086.03693HepG2IGF2BP1
chr10116203840116203907-CDS,intron-Distal,intron-Proximal3.001965.40388HepG2U2AF2
chr10116207645116207747-CDS,intron-Distal3.251516.66900HepG2GRWD1
chr10116203788116203896-CDS,intron-Distal,intron-Proximal3.6656212.47924HepG2PPIG
chr10116232815116232888-CDS,intron-Distal3.022435.29017HepG2BCLAF1
chr10116233636116233689-CDS,intron-Distal,intron-Proximal3.723049.50935HepG2BCLAF1
chr10116199777116199864-CDS,intron-Distal,intron-Proximal3.053615.68689HepG2U2AF2
chr10116205127116205165-CDS,intron-Distal,intron-Proximal3.386094.88141HepG2GRWD1
chr10116200773116200815-CDS,intron-Distal,intron-Proximal3.007554.23325HepG2BCLAF1
chr10116222917116222983-intron-Distal4.002323.05187HepG2QKI
chr10116213395116213483-intron-Distal4.107055.57156HepG2QKI
chr10116213433116213502-intron-Distal5.045676.36553HepG2RBFOX2
chr10116233716116233763-intron-Distal,intron-Proximal5.389786.66303HepG2SF3B4
chr10116255212116255320-intron-Distal4.8442910.75820HepG2HNRNPL
chr10116240460116240537-intron-Distal4.179783.82973HepG2HLTF
chr10116272559116272635-intron-Distal4.225478.79903HepG2PTBP1
chr10116255086116255218-intron-Distal4.498125.25929HepG2GTF2F1
chr10116255320116255415-intron-Distal4.588688.75025HepG2HNRNPL
chr10116302285116302335-intron-Distal5.224634.59452HepG2PCBP2
chr10116255112116255212-intron-Distal6.5584115.54061HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ABLIM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ABLIM1 is not available on ENCORE database.

  • 86 RBPs can affect the levels of ABLIM1.  








The Knockdown/knockout RNA-Seq assay for ABLIM1 is not available on ENCORE database.





86 RBPs can affect the gene expression of ABLIM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ABLIM1ENSG00000099204.142512.156204680.76410-0.8978014.7376012.86180HepG2ABCF1
ABLIM1ENSG00000099204.142928.279304326.43390-0.563107.142105.63380HepG2ADAR
ABLIM1ENSG00000099204.142571.977603345.91700-0.379502.740301.70540HepG2AKAP8
ABLIM1ENSG00000099204.145088.782703823.738200.412203.864002.94170HepG2ASCC1
ABLIM1ENSG00000099204.143119.607904179.06400-0.421803.169802.16600HepG2BCCIP
ABLIM1ENSG00000099204.143802.872304775.43770-0.328503.193002.55530HepG2BOP1
ABLIM1ENSG00000099204.143679.767204487.82790-0.286403.409502.56440HepG2CALR
ABLIM1ENSG00000099204.142472.403003566.56120-0.528603.162402.34110HepG2CNOT7
ABLIM1ENSG00000099204.142703.579004384.14200-0.6974010.882509.61480HepG2CPSF6
ABLIM1ENSG00000099204.145046.784606022.63490-0.255006.044005.00890HepG2DAZAP1
ABLIM1ENSG00000099204.142913.603303975.87300-0.4485012.5123011.00720HepG2DDX19B
ABLIM1ENSG00000099204.143258.339703959.81870-0.281302.555501.90030HepG2DDX21
ABLIM1ENSG00000099204.142983.005704147.62020-0.475505.359903.99860HepG2DDX5
ABLIM1ENSG00000099204.142132.223104112.94650-0.9478041.6587039.85350HepG2DKC1
ABLIM1ENSG00000099204.142987.972904356.55650-0.5440012.8181011.39390HepG2DNAJC21
ABLIM1ENSG00000099204.143550.104004317.97890-0.282506.278605.35300HepG2DNAJC2
ABLIM1ENSG00000099204.142829.947103878.54580-0.454704.687003.51450HepG2EEF2
ABLIM1ENSG00000099204.142996.034503655.67780-0.287102.029401.51240HepG2EIF2S1
ABLIM1ENSG00000099204.143920.076003148.576300.316102.551101.67870HepG2EIF3D
ABLIM1ENSG00000099204.142789.509703739.07850-0.422705.920304.42720HepG2EIF3G
ABLIM1ENSG00000099204.142270.470304039.93170-0.8313011.010809.76210HepG2EIF4A3
ABLIM1ENSG00000099204.147533.898503933.482400.9375011.4208010.06980HepG2EIF4B
ABLIM1ENSG00000099204.143020.481704054.63170-0.424804.747503.35650HepG2ESF1
ABLIM1ENSG00000099204.148732.487307679.763200.185202.634902.04520HepG2ETF1
ABLIM1ENSG00000099204.143196.593004200.69350-0.394104.922903.81160HepG2EWSR1
ABLIM1ENSG00000099204.146826.323204726.416400.530305.308104.27120HepG2FIP1L1
ABLIM1ENSG00000099204.142869.901204391.59410-0.613702.458801.50630HepG2FTO
ABLIM1ENSG00000099204.145162.913504076.188300.340902.773302.08050HepG2FXR1
ABLIM1ENSG00000099204.144800.760803781.227300.344302.586501.94300HepG2G3BP1
ABLIM1ENSG00000099204.142310.636902803.41870-0.278902.210301.41580HepG2GEMIN5
ABLIM1ENSG00000099204.142975.746704969.84880-0.740009.922308.76260HepG2GPKOW
ABLIM1ENSG00000099204.141957.808104398.29230-1.1677033.9890032.20810HepG2HNRNPA1
ABLIM1ENSG00000099204.142559.052004892.25130-0.9349022.0207020.27020HepG2HNRNPC
ABLIM1ENSG00000099204.143628.998805229.22050-0.5270015.5936014.07200HepG2HNRNPF
ABLIM1ENSG00000099204.144974.070503828.917000.377403.870203.05610HepG2HNRNPK
ABLIM1ENSG00000099204.143966.402805486.29390-0.4680017.8560016.27870HepG2HNRNPL
ABLIM1ENSG00000099204.143149.376404742.81080-0.590707.688906.69920HepG2HNRNPLL
ABLIM1ENSG00000099204.143969.653404859.90930-0.291905.371804.54900HepG2HNRNPU
ABLIM1ENSG00000099204.143573.952105149.25120-0.5268010.070808.77280HepG2IGF2BP1
ABLIM1ENSG00000099204.142477.756803397.22490-0.455303.399502.05570HepG2KHDRBS1
ABLIM1ENSG00000099204.145318.905603865.950100.460203.472902.33280HepG2KHSRP
ABLIM1ENSG00000099204.145551.722804100.422700.437103.743703.01950HepG2MATR3
ABLIM1ENSG00000099204.142336.649703825.11130-0.7111014.1234012.44780HepG2MSI2
ABLIM1ENSG00000099204.143453.682704836.87070-0.485903.120502.08650HepG2MTPAP
ABLIM1ENSG00000099204.142255.636903772.78310-0.742104.783103.32330HepG2NONO
ABLIM1ENSG00000099204.142580.598204205.34910-0.7045011.7275010.28680HepG2NSUN2
ABLIM1ENSG00000099204.143484.240004334.65700-0.315104.663803.73250HepG2PPIL4
ABLIM1ENSG00000099204.145043.755203889.721300.374708.144807.30770HepG2PTBP1
ABLIM1ENSG00000099204.143682.791705700.68180-0.6303011.8148010.70120HepG2PUF60
ABLIM1ENSG00000099204.144493.399006051.38120-0.4295016.0486014.86150HepG2PUM1
ABLIM1ENSG00000099204.144932.175206047.05070-0.294003.872103.08190HepG2PUM2
ABLIM1ENSG00000099204.144893.144604212.282300.216102.448701.85500HepG2QKI
ABLIM1ENSG00000099204.144724.554503823.061300.305303.435302.69020HepG2RBM25
ABLIM1ENSG00000099204.144147.981505633.72440-0.441706.015105.06450HepG2RPLP0
ABLIM1ENSG00000099204.142808.095404451.77320-0.664805.158003.89070HepG2RPS10
ABLIM1ENSG00000099204.143620.633004726.21690-0.384403.605002.69480HepG2RPS2
ABLIM1ENSG00000099204.142646.719003580.21110-0.435802.882802.06610HepG2RPS3A
ABLIM1ENSG00000099204.144414.938403135.682500.493504.777303.77670HepG2RRP9
ABLIM1ENSG00000099204.143013.754804327.98520-0.5221017.2154015.80560HepG2SAFB2
ABLIM1ENSG00000099204.141798.686904521.97860-1.3300021.7166019.78000HepG2SF3A3
ABLIM1ENSG00000099204.143777.794604694.49330-0.313402.859202.14170HepG2SF3B1
ABLIM1ENSG00000099204.144352.261105465.76900-0.328708.955607.80610HepG2SLBP
ABLIM1ENSG00000099204.144119.964005047.19760-0.292907.686306.69770HepG2SMN1
ABLIM1ENSG00000099204.146505.948104226.807800.6221025.5023024.38310HepG2SRSF1
ABLIM1ENSG00000099204.143851.230705137.66860-0.4158010.370509.17140HepG2SRSF7
ABLIM1ENSG00000099204.142842.594403438.84630-0.274704.429103.76170HepG2SRSF9
ABLIM1ENSG00000099204.143188.346206294.54150-0.9813055.2370053.66410HepG2SSB
ABLIM1ENSG00000099204.142301.983403113.99390-0.435902.968001.82390HepG2STIP1
ABLIM1ENSG00000099204.142217.883103191.38180-0.525007.780706.26100HepG2SUPT6H
ABLIM1ENSG00000099204.142830.845304090.36010-0.531005.144004.26690HepG2SUPV3L1
ABLIM1ENSG00000099204.145250.177503799.583600.4664010.097509.13390HepG2TAF15
ABLIM1ENSG00000099204.143767.783304622.55390-0.295002.562401.86050HepG2TARDBP
ABLIM1ENSG00000099204.144063.106403490.913600.218902.092101.36210HepG2TIA1
ABLIM1ENSG00000099204.141943.354804722.44400-1.2810051.7479050.09190HepG2TIAL1
ABLIM1ENSG00000099204.143294.230604764.51530-0.5324015.5853014.39890HepG2TRIM56
ABLIM1ENSG00000099204.144582.990205569.08910-0.281203.139902.20490HepG2TUFM
ABLIM1ENSG00000099204.143039.940202416.347000.331102.643601.90330HepG2UCHL5
ABLIM1ENSG00000099204.143265.873604010.31060-0.296205.593204.65480HepG2UPF1
ABLIM1ENSG00000099204.141903.005203745.69250-0.9770010.909808.86720HepG2UPF2
ABLIM1ENSG00000099204.145478.502203871.786600.5007015.7661014.50950HepG2UTP3
ABLIM1ENSG00000099204.142118.951203206.73960-0.597804.740503.29020HepG2XPO5
ABLIM1ENSG00000099204.141406.282504026.50900-1.5176040.6147038.13660HepG2XRN2
ABLIM1ENSG00000099204.142810.427304335.75650-0.6255025.3657023.70210HepG2ZC3H8
ABLIM1ENSG00000099204.143510.392504410.56410-0.329308.673907.84440HepG2ZNF622
ABLIM1ENSG00000099204.1491.612205.035904.1851020.1664018.56580K562DDX47
ABLIM1ENSG00000099204.1431.543604.641802.764504.176203.17140K562RPS19
ABLIM1ENSG00000099204.142.2832024.20010-3.405902.061201.43520K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ABLIM1 is not available on ENCORE database.





17 RBPs can affect the splicing of ABLIM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEABLIM1ENSG00000099204.14chr10-1162076381162077791162050701162051621162113821162114300.077000.000770.02163includedHepG2HNRNPK
SEABLIM1ENSG00000099204.14chr10-116207638116207785116205070116205162116211382116211430-0.136000.000080.00157excludedHepG2U2AF2
SEABLIM1ENSG00000099204.14chr10-1162076381162077791162050701162051621162113821162114300.079000.000090.00784includedHepG2SFPQ
SEABLIM1ENSG00000099204.14chr10-1162131371162132421162113821162114301162254561162255860.148000.000190.01358includedHepG2PTBP1
SEABLIM1ENSG00000099204.14chr10-116207638116207785116205070116205162116211382116211430-0.102000.001010.09884excludedHepG2PCBP2
SEABLIM1ENSG00000099204.14chr10-1162336371162337151162327351162328911162477161162477750.165000.000110.03623includedHepG2NOL12
SEABLIM1ENSG00000099204.14chr10-1162336371162337151162327351162328911162477161162477750.118000.000930.08316includedHepG2TAF15
A3SSABLIM1ENSG00000099204.14chr10-1162076381162077851162076381162077791162113821162114300.192000.000000.00004longerHepG2DDX59
A3SSABLIM1ENSG00000099204.14chr10-116207638116207819116207638116207779116211382116211430-0.261000.000260.09827shorterHepG2IGF2BP3
A3SSABLIM1ENSG00000099204.14chr10-116207638116207785116207638116207779116211382116211430-0.243000.000010.00210shorterHepG2RBM22
A3SSABLIM1ENSG00000099204.14chr10-116207638116207785116207638116207779116211382116211430-0.223000.000000.00219shorterHepG2EIF3D
A3SSABLIM1ENSG00000099204.14chr10-116207638116207785116207638116207779116211382116211430-0.481000.000000.00000shorterHepG2SFPQ
A3SSABLIM1ENSG00000099204.14chr10-1162076381162078111162076381162077851162113821162114300.132000.000050.00330longerHepG2U2AF1
A3SSABLIM1ENSG00000099204.14chr10-116207638116207811116207638116207779116211382116211430-0.133000.000320.01529shorterHepG2U2AF1
A3SSABLIM1ENSG00000099204.14chr10-116207638116207785116207638116207779116211382116211430-0.360000.000030.01507shorterHepG2SRSF9
A3SSABLIM1ENSG00000099204.14chr10-116207638116207785116207638116207779116211382116211430-0.272000.000000.00000shorterHepG2HNRNPC
MXEABLIM1ENSG00000099204.14chr10-1162113821162114301162254561162255861162076381162077851162279391162279750.155000.000000.000021includedHepG2U2AF1
MXEABLIM1ENSG00000099204.14chr10-116232735116232891116233637116233715116227939116227975116247716116247775-0.249000.004810.046972includedHepG2SFPQ
MXEABLIM1ENSG00000099204.14chr10-116227939116227975116232735116232891116225456116225586116233637116233715-0.121000.000000.000002includedHepG2SFPQ
MXEABLIM1ENSG00000099204.14chr10-1162076381162077851162113821162114301162050701162051621162254561162255860.260000.000050.000621includedHepG2U2AF2
MXEABLIM1ENSG00000099204.14chr10-1162327351162328911162336371162337151162279391162279751162477161162477750.166000.000480.020951includedHepG2SUPV3L1
MXEABLIM1ENSG00000099204.14chr10-1162076381162077851162113821162114301162050701162051621162254561162255860.124000.000020.003881includedHepG2LARP4
MXEABLIM1ENSG00000099204.14chr10-1162076381162077791162113821162114301162050701162051621162254561162255860.122000.000010.002791includedHepG2LARP4
MXEABLIM1ENSG00000099204.14chr10-1162076381162077851162113821162114301162050701162051621162254561162255860.180000.000150.008371includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ABLIM1 is not avaliable on ENCORE database.