ABCA5

General Information

Gene Name       : ABCA5
Gene ID             : ENSG00000154265.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ABCA5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ABCA5ENSG00000154265.1514.469.8712.16ENCSR000AEF
HepG2ABCA5ENSG00000154265.152.464.233.35ENCSR985KAT
K562ABCA5ENSG00000154265.150.780.500.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ABCA5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ABCA5 RNA is bound by 6 proteins.  







eCLIP assay for ABCA5 is not avaliable on ENCORE database.





6 proteins are bound to ABCA5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr176725189467251992-3'-UTR,CDS,intron-Distal,intron-Proximal4.2571610.24470HepG2BCLAF1
chr176725736767257401-3'-UTR,CDS,intron-Distal,intron-Proximal3.091703.18789HepG2BCLAF1
chr176724971267249788-3'-UTR,CDS,intron-Distal,intron-Proximal4.100109.69111HepG2BCLAF1
chr176731046567310565-3'-UTR,5'-UTR,CDS,intron-Distal3.841569.74534HepG2BCLAF1
chr176725229667252338-3'-UTR,CDS,intron-Distal,intron-Proximal3.752666.81385HepG2BCLAF1
chr176725046967250533-3'-UTR,CDS,intron-Distal3.512875.56491HepG2BCLAF1
chr176727015767270229-3'-UTR,5'-UTR,CDS,intron-Distal3.857639.50935HepG2BCLAF1
chr176726408567264142-3'-UTR,5'-UTR,CDS,intron-Distal3.665306.67313HepG2BCLAF1
chr176724993967249995-3'-UTR,CDS,intron-Distal4.241307.53358HepG2BCLAF1
chr176731050367310589-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.242865.67580HepG2U2AF2
chr176725726767257317-3'-UTR,CDS,intron-Distal3.321415.15500HepG2BCLAF1
chr176726682567266879-3'-UTR,5'-UTR,CDS,intron-Distal3.761624.09885HepG2BCLAF1
chr176727385967273984-5'-UTR,CDS,intron-Distal,intron-Proximal4.3042215.85384HepG2BCLAF1
chr176728015967280213-5'-UTR,CDS,intron-Distal5.083557.49561HepG2BCLAF1
chr176728009167280137-5'-UTR,CDS,intron-Distal,intron-Proximal4.266627.53358HepG2BCLAF1
chr176729081867290854-CDS,intron-Distal3.961595.06180HepG2BCLAF1
chr176728236167282395-CDS,intron-Distal,intron-Proximal4.093114.09885HepG2BCLAF1
chr176728615967286178-CDS,intron-Distal4.530348.41475HepG2BCLAF1
chr176728740367287458-CDS,intron-Distal4.049084.51739HepG2BCLAF1
chr176728383667283893-CDS,intron-Distal,intron-Proximal4.8100511.09109HepG2BCLAF1
chr176728735667287403-CDS,intron-Distal,intron-Proximal4.698869.30195HepG2BCLAF1
chr176730291267302968-CDS,intron-Distal4.624074.04372HepG2BCLAF1
chr176729727967297300-CDS,intron-Distal,intron-Proximal4.111843.45943HepG2BCLAF1
chr176728210667282147-CDS,intron-Distal3.130113.71797HepG2BCLAF1
chr176729333167293370-CDS,intron-Distal,intron-Proximal3.220393.71797HepG2BCLAF1
chr176728600567286049-CDS,intron-Distal3.370913.94979HepG2BCLAF1
chr176728377267283822-CDS,intron-Distal5.136096.71715HepG2BCLAF1
chr176728531767285382-CDS,intron-Distal,intron-Proximal4.8325312.14572HepG2BCLAF1
chr176730443167304436-CDS,intron-Distal4.080343.02457HepG2BCLAF1
chr176728204167282087-CDS,intron-Distal4.139076.65960HepG2BCLAF1
chr176732314667323193-intron-Distal4.466294.92499HepG2AQR
chr176731187667311929-intron-Distal3.358884.23034HepG2HNRNPC
chr176724715267247240-intron-Distal3.288773.35103HepG2QKI
chr176725561667255719-intron-Distal4.277343.77802HepG2U2AF2
chr176732286867322977-intron-Distal4.224933.87340HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ABCA5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ABCA5 is not available on ENCORE database.

  • 112 RBPs can affect the levels of ABCA5.  








The Knockdown/knockout RNA-Seq assay for ABCA5 is not available on ENCORE database.





112 RBPs can affect the gene expression of ABCA5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ABCA5ENSG00000154265.11743.50570383.997800.953106.095704.75770HepG2ABCF1
ABCA5ENSG00000154265.11604.306301150.71440-0.929209.856908.92010HepG2AKAP1
ABCA5ENSG00000154265.11768.76880475.272600.6937010.076408.72480HepG2AKAP8L
ABCA5ENSG00000154265.11614.71460952.12340-0.631205.581204.48720HepG2ASCC1
ABCA5ENSG00000154265.11659.91700346.498200.9293010.175807.71000HepG2ATP5C1
ABCA5ENSG00000154265.11988.31980403.748001.2914033.6411031.71820HepG2AUH
ABCA5ENSG00000154265.11497.75220355.631900.484902.752401.81800HepG2BCCIP
ABCA5ENSG00000154265.11657.49320309.056701.089009.491207.95840HepG2BCLAF1
ABCA5ENSG00000154265.11523.99410278.428300.912108.937707.93830HepG2BOP1
ABCA5ENSG00000154265.11404.82600287.687100.492702.867001.61360HepG2BUD13
ABCA5ENSG00000154265.11937.57360355.431501.3993030.0687028.08530HepG2CALR
ABCA5ENSG00000154265.11682.84370474.945700.523702.322201.43680HepG2CCAR1
ABCA5ENSG00000154265.111340.49870904.581500.567305.358604.30040HepG2CIRBP
ABCA5ENSG00000154265.11363.43460219.729100.725905.373003.94220HepG2CSTF2
ABCA5ENSG00000154265.111079.41060548.904200.9755022.1669020.43460HepG2DAZAP1
ABCA5ENSG00000154265.111543.51240388.267401.9910059.0270056.57200HepG2DDX21
ABCA5ENSG00000154265.11664.47260380.076700.805809.169307.53900HepG2DDX24
ABCA5ENSG00000154265.11632.33880327.199800.950408.232606.15270HepG2DDX27
ABCA5ENSG00000154265.11860.413401102.30560-0.357402.218501.65250HepG2DDX3X
ABCA5ENSG00000154265.11714.95090492.336700.538104.359802.75470HepG2DDX47
ABCA5ENSG00000154265.11493.62250290.268100.765903.653802.53420HepG2DDX59
ABCA5ENSG00000154265.11751.02040347.202701.113007.995106.36870HepG2DDX5
ABCA5ENSG00000154265.11749.96580946.88390-0.336401.833901.32040HepG2DDX6
ABCA5ENSG00000154265.11692.43630279.446001.3090020.5986018.37410HepG2DHX30
ABCA5ENSG00000154265.111080.68650452.599101.255506.132605.20010HepG2DKC1
ABCA5ENSG00000154265.11575.20930289.734000.9893013.5969012.13120HepG2DNAJC21
ABCA5ENSG00000154265.11674.31980357.644700.914807.432805.65580HepG2AGO1
ABCA5ENSG00000154265.111407.03510910.281700.628206.184105.31630HepG2EIF2S1
ABCA5ENSG00000154265.11525.86390366.740700.519803.938102.67570HepG2EIF3G
ABCA5ENSG00000154265.111733.179501005.977600.784708.826707.68990HepG2EIF4A3
ABCA5ENSG00000154265.11413.91560979.44260-1.2426013.2325011.79350HepG2EIF4B
ABCA5ENSG00000154265.111070.14260541.407100.9829019.8413018.03780HepG2EIF4G1
ABCA5ENSG00000154265.111258.57770518.655001.278805.751204.59640HepG2EIF4G2
ABCA5ENSG00000154265.11527.77510332.629000.665904.949403.52710HepG2ESF1
ABCA5ENSG00000154265.11785.81010463.519500.761507.385906.48340HepG2ETF1
ABCA5ENSG00000154265.11589.76540291.047901.0188010.084907.93980HepG2FKBP4
ABCA5ENSG00000154265.111079.34450256.048502.0756010.222508.30440HepG2FTO
ABCA5ENSG00000154265.11420.397601014.96100-1.2716019.1714017.52570HepG2FXR1
ABCA5ENSG00000154265.11750.28470405.057200.889206.135804.59680HepG2GNB2L1
ABCA5ENSG00000154265.11851.90940289.763601.5557023.2159021.55650HepG2GPKOW
ABCA5ENSG00000154265.11621.66430292.509601.0876012.8891011.66360HepG2HNRNPA1
ABCA5ENSG00000154265.11707.24860504.391200.487604.498203.35720HepG2HNRNPA2B1
ABCA5ENSG00000154265.11727.11920325.359801.1601015.4626013.95360HepG2HNRNPC
ABCA5ENSG00000154265.11356.91470218.215000.709703.237902.46730HepG2HNRNPF
ABCA5ENSG00000154265.11559.46590953.35990-0.769008.467307.29860HepG2HNRNPK
ABCA5ENSG00000154265.11647.91860500.052200.373602.100501.50290HepG2HNRNPL
ABCA5ENSG00000154265.111396.87280276.526302.3366063.7924061.42920HepG2HNRNPLL
ABCA5ENSG00000154265.11489.31620323.208900.598205.077604.27670HepG2HNRNPU
ABCA5ENSG00000154265.11399.03380214.882100.892908.915707.68670HepG2IGF2BP1
ABCA5ENSG00000154265.11424.84490898.13840-1.080005.583104.21030HepG2IGF2BP3
ABCA5ENSG00000154265.11858.88860560.732200.615103.814002.23160HepG2ILF3
ABCA5ENSG00000154265.11589.10180432.431700.445904.480103.19680HepG2KIF1C
ABCA5ENSG00000154265.11589.45250416.733000.500202.441801.30760HepG2LIN28B
ABCA5ENSG00000154265.11602.967401015.31520-0.751807.615306.54210HepG2MAGOH
ABCA5ENSG00000154265.11743.560301021.00240-0.457502.097501.54380HepG2MATR3
ABCA5ENSG00000154265.111010.11810313.798001.6865037.1041034.72780HepG2MSI2
ABCA5ENSG00000154265.11774.28570282.010001.457009.641107.79540HepG2MTPAP
ABCA5ENSG00000154265.11526.51780263.501000.998605.190803.54130HepG2NAA15
ABCA5ENSG00000154265.11484.91290245.189800.983708.884707.60220HepG2NSUN2
ABCA5ENSG00000154265.111092.29830525.698801.055004.109403.01280HepG2PABPC1
ABCA5ENSG00000154265.111694.89730930.708100.8647011.418709.97910HepG2PABPC4
ABCA5ENSG00000154265.11244.57700319.92540-0.387402.070501.32940HepG2PARN
ABCA5ENSG00000154265.11594.31720891.40380-0.584808.233907.27830HepG2PCBP1
ABCA5ENSG00000154265.11977.24150456.482901.0981010.439408.60390HepG2PCBP2
ABCA5ENSG00000154265.11583.90540380.896100.616204.475902.36470HepG2PHF6
ABCA5ENSG00000154265.11436.12980288.277100.597205.084004.11370HepG2PPIL4
ABCA5ENSG00000154265.11493.32150203.209101.2795010.124808.77940HepG2PRPF4
ABCA5ENSG00000154265.11815.73050269.832301.5959025.4467023.38490HepG2PRPF8
ABCA5ENSG00000154265.11462.85900907.03610-0.9706018.3190017.14500HepG2PTBP1
ABCA5ENSG00000154265.11369.31720551.45710-0.578406.317705.49760HepG2PUM1
ABCA5ENSG00000154265.11970.64740551.082600.8166011.5282010.20930HepG2PUM2
ABCA5ENSG00000154265.111087.17480481.856101.1738029.4416027.81930HepG2PUS1
ABCA5ENSG00000154265.11928.78770440.650201.075607.856306.70520HepG2RAVER1
ABCA5ENSG00000154265.111241.26950891.539600.477304.995704.11320HepG2RBM25
ABCA5ENSG00000154265.11531.851301009.44460-0.9245017.9867016.84120HepG2NELFE
ABCA5ENSG00000154265.11452.75720940.15950-1.0542022.2894020.83090HepG2RECQL
ABCA5ENSG00000154265.11735.30980235.030601.6454029.7721028.05350HepG2RPLP0
ABCA5ENSG00000154265.111053.72250432.608901.2843013.5771011.66050HepG2RPS10
ABCA5ENSG00000154265.11374.66860271.349000.465402.388801.51320HepG2SERBP1
ABCA5ENSG00000154265.111232.05040273.709302.1702058.3431055.78300HepG2SF3B1
ABCA5ENSG00000154265.11566.25040944.34270-0.7379011.9228010.83230HepG2SF3B4
ABCA5ENSG00000154265.11839.49360498.053600.7531012.6446011.33150HepG2SLBP
ABCA5ENSG00000154265.11757.49440429.689900.817803.367101.60130HepG2SLTM
ABCA5ENSG00000154265.11221.39530335.66580-0.600404.657203.85890HepG2SMN1
ABCA5ENSG00000154265.11445.54670304.548600.548802.365501.64540HepG2SNRNP70
ABCA5ENSG00000154265.111017.90410437.595201.2178032.5992031.37370HepG2SRFBP1
ABCA5ENSG00000154265.11719.93910985.68890-0.453305.562404.95010HepG2SRSF1
ABCA5ENSG00000154265.11375.03180512.90440-0.451703.358402.68060HepG2SRSF5
ABCA5ENSG00000154265.11420.01240214.379700.9702012.0959010.81880HepG2SRSF7
ABCA5ENSG00000154265.111682.54980801.910001.0690037.3701035.78350HepG2SRSF9
ABCA5ENSG00000154265.113328.65920379.960203.13090302.22180299.52290HepG2SSB
ABCA5ENSG00000154265.11602.89550411.761700.550002.590101.42950HepG2SUB1
ABCA5ENSG00000154265.11371.81360583.36020-0.649806.758505.86150HepG2SUCLG1
ABCA5ENSG00000154265.11431.46880261.809100.720606.065804.70420HepG2SUPT6H
ABCA5ENSG00000154265.11659.55640348.093300.921908.441307.36510HepG2SUPV3L1
ABCA5ENSG00000154265.11545.94810885.97440-0.6985010.214109.24470HepG2TAF15
ABCA5ENSG00000154265.11497.45630269.514300.884108.019906.86930HepG2TARDBP
ABCA5ENSG00000154265.111604.54270314.069502.3529063.4592061.66460HepG2TIAL1
ABCA5ENSG00000154265.11442.43490331.679600.415601.937101.40070HepG2U2AF1
ABCA5ENSG00000154265.11741.01840537.114200.464202.294001.53710HepG2UBE2L3
ABCA5ENSG00000154265.11976.85730551.655800.8243016.6679015.23530HepG2UPF1
ABCA5ENSG00000154265.11681.41550318.834001.095605.261003.85300HepG2UPF2
ABCA5ENSG00000154265.11226.08660532.60450-1.2362018.8904017.54070HepG2UTP3
ABCA5ENSG00000154265.11889.99720517.265900.782806.104304.48340HepG2XPO5
ABCA5ENSG00000154265.11268.19740484.46880-0.853103.049301.93530HepG2XRCC6
ABCA5ENSG00000154265.11684.75930342.658700.9987010.773109.35710HepG2XRN2
ABCA5ENSG00000154265.11591.49400200.524401.5605033.5730031.73810HepG2ZC3H8
ABCA5ENSG00000154265.111318.21260606.718001.1194039.0623037.62940HepG2ZNF622
ABCA5ENSG00000154265.1148.6576096.02770-0.980803.318502.61480K562DDX47
ABCA5ENSG00000154265.1184.2675043.318300.959902.501601.63610K562EFTUD2
ABCA5ENSG00000154265.1133.5884082.20530-1.291304.109203.14830K562EIF3G
ABCA5ENSG00000154265.1146.6794089.85070-0.944702.916202.29720K562FXR1
ABCA5ENSG00000154265.11107.7967046.186901.222704.305503.57740K562HNRNPC
ABCA5ENSG00000154265.1163.49180103.21540-0.701002.255601.49290K562MAGOH
ABCA5ENSG00000154265.11222.21350127.992600.795802.500801.67140K562NAA15
ABCA5ENSG00000154265.11126.0829076.622600.718402.135101.40320K562PCBP3
ABCA5ENSG00000154265.1164.06430100.27420-0.646401.935401.36210K562PTBP1
ABCA5ENSG00000154265.1120.9925052.35440-1.318402.693601.62790K562SAFB
ABCA5ENSG00000154265.1130.7389058.94780-0.939402.026501.32390K562SYNCRIP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ABCA5 is not available on ENCORE database.





5 RBPs can affect the splicing of ABCA5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEABCA5ENSG00000154265.11chr17-672444026724445867243091672437856724604567246125-0.280000.000080.00231excludedHepG2U2AF1
SEABCA5ENSG00000154265.11chr17-672478876724800767246612672467626724971367249808-0.301000.004240.08437excludedHepG2HNRNPK
SEABCA5ENSG00000154265.11chr17-672444026724445867243091672437856724604567246125-0.116000.000820.01194excludedHepG2U2AF2
SEABCA5ENSG00000154265.11chr17-6724788767248007672466126724676267249713672498080.236000.000040.00454includedHepG2SRSF9
MXEABCA5ENSG00000154265.11chr17-6724788767248007672497136724980867246612672467626724993467250010-0.479000.000440.079402includedHepG2EFTUD2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ABCA5 is not avaliable on ENCORE database.