ZFP36

General Information

Gene Name       : ZFP36
Gene ID             : ENSG00000128016.5
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: ZFP36)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZFP36ENSG00000128016.519.0516.5717.81ENCSR000AEF
HepG2ZFP36ENSG00000128016.53.942.543.24ENCSR985KAT
K562ZFP36ENSG00000128016.59.019.029.02ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
RNA Bind-n-SeqRBNS: ZFP36ENCSR315VQDZFP36cell-free sampleReleasedENCSR866URJ  






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
ZFP36ZFP36ReleasedENCODE3


  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZFP36 is not avaliable on ENCORE database.


  • The binding motifs of ZFP36

    • Trulli

Proteins bound to RNA
  • ZFP36 RNA is bound by 4 proteins.  







eCLIP assay for ZFP36 is not avaliable on ENCORE database.





4 proteins are bound to ZFP36 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193989966239899714+3'-UTR4.7959917.94032K562PUM2
chr193989834739898437+3'-UTR,CDS,intron-Proximal4.725575.68078HepG2AQR
chr193989987939899920+3'-UTR3.966816.73573K562PUM2
chr193989873139898785+3'-UTR,CDS5.076628.28112K562RBM15
chr193989936339899416+3'-UTR4.671315.51215K562RBM15
chr193989904939899091+CDS4.472644.15208K562RBM15
chr193989755739897643+CDS,intron-Proximal5.9469814.22378HepG2PRPF8
chr193989914839899220+CDS5.6439922.12007K562PUM2
chr193989756239897575+CDS,intron-Proximal4.534709.33787HepG2AQR
chr193989757539897624+CDS,intron-Proximal4.6783210.03577HepG2AQR
chr193989926639899305+CDS3.806234.22136HepG2RBM15
chr193989926639899311+CDS4.967596.19943K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZFP36 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZFP36 is not available on ENCORE database.

  • 131 RBPs can affect the levels of ZFP36.  








The Knockdown/knockout RNA-Seq assay for ZFP36 is not available on ENCORE database.





131 RBPs can affect the gene expression of ZFP36 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZFP36ENSG00000128016.4371.08470286.721100.372002.244101.61410HepG2AUH
ZFP36ENSG00000128016.4267.40080125.813901.087606.537105.21910HepG2BCLAF1
ZFP36ENSG00000128016.4540.63600307.789300.812607.368906.44810HepG2BOP1
ZFP36ENSG00000128016.4895.17150495.401800.853502.675901.46680HepG2BUD13
ZFP36ENSG00000128016.4619.23790378.868700.708707.311106.13770HepG2CALR
ZFP36ENSG00000128016.4231.24860349.39660-0.595404.721703.89700HepG2CKAP4
ZFP36ENSG00000128016.4170.71870273.46920-0.679802.699301.94440HepG2CNOT7
ZFP36ENSG00000128016.4426.90070282.555600.595303.661202.88090HepG2CPSF6
ZFP36ENSG00000128016.41701.77850544.436001.6441017.5221015.02970HepG2CPSF7
ZFP36ENSG00000128016.4308.82800175.589800.814502.893301.85190HepG2YBX3
ZFP36ENSG00000128016.429.7674089.44340-1.587205.583104.13510HepG2CSTF2
ZFP36ENSG00000128016.4483.22350226.419301.093601.867301.32020HepG2CELF1
ZFP36ENSG00000128016.4408.20590243.488400.745307.595706.45720HepG2DAZAP1
ZFP36ENSG00000128016.4206.60210323.23690-0.645705.205404.10860HepG2DDX19B
ZFP36ENSG00000128016.4488.31040142.348701.7783019.0478017.28200HepG2DDX55
ZFP36ENSG00000128016.4581.34790320.866500.857302.230401.35540HepG2DDX59
ZFP36ENSG00000128016.4889.26560344.172001.3694012.0005010.82230HepG2DDX6
ZFP36ENSG00000128016.4316.18530166.288600.927007.153805.64530HepG2DHX30
ZFP36ENSG00000128016.4169.76210334.38780-0.978009.019807.93660HepG2DKC1
ZFP36ENSG00000128016.4580.73960172.405601.7520029.7917027.76340HepG2DNAJC21
ZFP36ENSG00000128016.4246.15200170.898300.526303.056602.37730HepG2DNAJC2
ZFP36ENSG00000128016.4150.31730283.23180-0.914005.455504.19830HepG2EEF2
ZFP36ENSG00000128016.4151.41410236.07130-0.640703.040901.88240HepG2EFTUD2
ZFP36ENSG00000128016.4614.21460330.569000.893704.229003.50450HepG2EIF2S1
ZFP36ENSG00000128016.4480.77520739.73320-0.621604.683802.32560HepG2EIF3H
ZFP36ENSG00000128016.4394.70530230.090300.778505.589804.45490HepG2EIF4G2
ZFP36ENSG00000128016.4849.89710283.064401.586107.412705.75870HepG2FTO
ZFP36ENSG00000128016.4120.68130207.47590-0.781703.268802.05260HepG2FUS
ZFP36ENSG00000128016.4102.15140363.32900-1.830603.468002.46390HepG2G3BP2
ZFP36ENSG00000128016.4128.40530204.68300-0.672702.858501.94520HepG2GEMIN5
ZFP36ENSG00000128016.4213.00880104.618501.025705.661204.19360HepG2GNB2L1
ZFP36ENSG00000128016.4659.47070320.266401.041902.908202.25350HepG2GPKOW
ZFP36ENSG00000128016.4646.16690333.664800.9534012.7977010.94380HepG2HDGF
ZFP36ENSG00000128016.4380.41470223.757400.765503.717002.65900HepG2HNRNPA2B1
ZFP36ENSG00000128016.4259.92650182.597600.509302.886102.15530HepG2HNRNPF
ZFP36ENSG00000128016.4322.87720221.809100.541603.507402.75610HepG2HNRNPL
ZFP36ENSG00000128016.41141.86800305.639001.9014027.5303025.88820HepG2HNRNPLL
ZFP36ENSG00000128016.4270.95980179.807400.591503.441302.64080HepG2IGF2BP1
ZFP36ENSG00000128016.4671.67700347.515800.950602.957102.26290HepG2IGF2BP2
ZFP36ENSG00000128016.4365.61760196.459200.8960010.350109.02410HepG2ILF2
ZFP36ENSG00000128016.4573.57890319.477300.8442012.7489010.76120HepG2KIF1C
ZFP36ENSG00000128016.4170.77870369.00570-1.111501.958801.40280HepG2MAGOH
ZFP36ENSG00000128016.4118.58740371.00140-1.645503.115702.44960HepG2MATR3
ZFP36ENSG00000128016.4952.19130453.780301.069203.041101.76840HepG2NAA15
ZFP36ENSG00000128016.4317.68230164.774400.947003.055101.52810HepG2NOLC1
ZFP36ENSG00000128016.4221.32000130.692300.759902.561601.51340HepG2NONO
ZFP36ENSG00000128016.4420.57670271.030900.633803.877202.99510HepG2NSUN2
ZFP36ENSG00000128016.4194.85490104.130100.903904.145301.69860HepG2NUSAP1
ZFP36ENSG00000128016.41729.56840250.027902.7902047.6061044.39050HepG2PABPC1
ZFP36ENSG00000128016.41222.28800337.873901.8549038.5653035.94140HepG2PABPC4
ZFP36ENSG00000128016.4272.4091098.348801.469703.291301.45610HepG2PHF6
ZFP36ENSG00000128016.4106.07530190.12160-0.841804.471802.90880HepG2PKM
ZFP36ENSG00000128016.4424.96840171.543301.308705.141404.16490HepG2PPIL4
ZFP36ENSG00000128016.4111.35810206.45950-0.890703.829702.40640HepG2PRPF6
ZFP36ENSG00000128016.4488.23350244.468900.9978010.914409.63140HepG2PUM2
ZFP36ENSG00000128016.4617.97940367.775500.748602.352701.76860HepG2QKI
ZFP36ENSG00000128016.4906.02380189.512502.2572027.4953025.51200HepG2RAVER1
ZFP36ENSG00000128016.41247.93320880.704500.502706.015804.81140HepG2RBM15
ZFP36ENSG00000128016.4863.06350333.792601.370409.876208.65920HepG2RBM25
ZFP36ENSG00000128016.4264.56460100.355701.398408.518506.67290HepG2RCC2
ZFP36ENSG00000128016.4216.03270377.94330-0.806906.597405.82210HepG2NELFE
ZFP36ENSG00000128016.4227.58290352.02660-0.629304.385303.63280HepG2RECQL
ZFP36ENSG00000128016.4195.17810104.480000.901504.184901.68790HepG2RPL23A
ZFP36ENSG00000128016.4147.17800223.72430-0.604202.790102.17250HepG2RPS19
ZFP36ENSG00000128016.4449.01680171.276601.3903022.1927020.61600HepG2SAFB2
ZFP36ENSG00000128016.4385.50500258.803700.574802.709501.41140HepG2SART3
ZFP36ENSG00000128016.4347.82600224.499100.631602.941701.97030HepG2SERBP1
ZFP36ENSG00000128016.41301.23640302.503602.1048046.8327044.41090HepG2SF3B1
ZFP36ENSG00000128016.4484.55700220.961001.1328016.8304015.36820HepG2SLBP
ZFP36ENSG00000128016.4637.96490184.935701.786404.330602.34290HepG2SLTM
ZFP36ENSG00000128016.4746.2454098.643702.9193018.9289015.47770HepG2SNRNP200
ZFP36ENSG00000128016.4916.76140336.595001.4454012.1000010.47510HepG2SNRNP70
ZFP36ENSG00000128016.4690.03780310.756501.1508021.5920020.53830HepG2SRFBP1
ZFP36ENSG00000128016.4100.75030369.04380-1.8730025.2144024.09820HepG2SRSF1
ZFP36ENSG00000128016.4520.94870325.548000.678204.086802.84580HepG2SRSF3
ZFP36ENSG00000128016.4352.32090227.540600.630704.622403.84950HepG2SRSF5
ZFP36ENSG00000128016.4316.27210179.393300.817907.157806.12060HepG2SRSF7
ZFP36ENSG00000128016.4697.75590300.246701.2165025.8240024.45990HepG2SRSF9
ZFP36ENSG00000128016.4122.02960269.82940-1.144809.959309.10190HepG2SSB
ZFP36ENSG00000128016.41158.97040445.773301.378403.806102.37520HepG2STAU1
ZFP36ENSG00000128016.4349.75040239.161800.548202.711001.62180HepG2STIP1
ZFP36ENSG00000128016.4394.06800177.108901.153707.267905.36830HepG2SUB1
ZFP36ENSG00000128016.4772.92960530.350400.543302.618501.33310HepG2SUGP2
ZFP36ENSG00000128016.41286.76210450.700001.5134012.0469010.20960HepG2SUPT6H
ZFP36ENSG00000128016.4413.49910141.712401.5448013.7894012.47080HepG2SUPV3L1
ZFP36ENSG00000128016.4141.93400331.74290-1.2248011.9062010.86890HepG2TAF15
ZFP36ENSG00000128016.4439.92900297.989200.561903.408002.61240HepG2TARDBP
ZFP36ENSG00000128016.4321.75890514.49030-0.677202.573401.54130HepG2TBRG4
ZFP36ENSG00000128016.4227.3040094.988801.258705.036503.75190HepG2TFIP11
ZFP36ENSG00000128016.4611.99320188.557701.6984039.0057037.19430HepG2TRIM56
ZFP36ENSG00000128016.41787.82860571.311201.6458014.3307012.86420HepG2U2AF1
ZFP36ENSG00000128016.4619.66650114.735202.433106.980205.34180HepG2U2AF2
ZFP36ENSG00000128016.4557.82530238.295901.2270011.059009.34050HepG2UBE2L3
ZFP36ENSG00000128016.4929.28870567.768700.710709.499908.34010HepG2UPF1
ZFP36ENSG00000128016.4380.36990583.56500-0.617505.503104.07150HepG2UTP18
ZFP36ENSG00000128016.4379.61470548.15390-0.530003.278802.63670HepG2UTP3
ZFP36ENSG00000128016.4477.72870246.188500.956303.329702.11810HepG2XPO5
ZFP36ENSG00000128016.42017.98300624.432801.6922035.5747034.18640HepG2ZNF622
ZFP36ENSG00000128016.4642.71820398.882200.688108.443007.52440K562AGGF1
ZFP36ENSG00000128016.4599.36320438.321800.451302.871201.86660K562AKAP8
ZFP36ENSG00000128016.4765.24980415.057600.8825011.070409.64460K562AKAP8L
ZFP36ENSG00000128016.4552.63620353.465600.644704.782004.04830K562AQR
ZFP36ENSG00000128016.4541.60920435.500300.314502.101001.31280K562ATP5C1
ZFP36ENSG00000128016.4439.42180234.738900.904408.084906.03660K562CCAR1
ZFP36ENSG00000128016.4384.95050262.812600.550503.313401.84590K562DHX30
ZFP36ENSG00000128016.4470.18880346.036400.442202.568401.75210K562FIP1L1
ZFP36ENSG00000128016.4450.11900320.112800.491602.739801.82950K562FTO
ZFP36ENSG00000128016.4474.09430354.406000.419702.395701.65450K562GPKOW
ZFP36ENSG00000128016.4757.38210261.844501.532208.120605.64100K562HNRNPA2B1
ZFP36ENSG00000128016.4446.71110180.330601.3086015.0463013.73970K562HNRNPC
ZFP36ENSG00000128016.4369.68570505.41100-0.451203.057501.93960K562HNRNPL
ZFP36ENSG00000128016.4261.8613097.637501.423205.097903.53090K562IGF2BP2
ZFP36ENSG00000128016.4209.0255099.295401.073807.181505.13250K562IGF2BP3
ZFP36ENSG00000128016.4267.56040174.419700.617203.377001.80540K562LARP7
ZFP36ENSG00000128016.4261.80080160.637900.704603.882901.99760K562LSM11
ZFP36ENSG00000128016.4636.98700421.646300.595104.986403.40490K562MAK16
ZFP36ENSG00000128016.4757.70130493.439800.618706.750905.20980K562MBNL1
ZFP36ENSG00000128016.4527.03630345.938500.607304.784003.61250K562METAP2
ZFP36ENSG00000128016.4397.26620499.27220-0.329702.169701.44840K562MTPAP
ZFP36ENSG00000128016.4563.01290228.842901.298705.116303.65560K562PABPN1
ZFP36ENSG00000128016.4145.7905091.260200.675702.398901.49130K562PCBP2
ZFP36ENSG00000128016.4273.52570176.005100.636003.505201.87070K562PHF6
ZFP36ENSG00000128016.4591.98930271.875201.122503.580301.84760K562PPP1R8
ZFP36ENSG00000128016.4230.51960122.387900.913304.567403.60370K562PRPF8
ZFP36ENSG00000128016.4326.54870161.665901.014204.326603.15800K562PSIP1
ZFP36ENSG00000128016.4246.5048099.661601.3064011.3756010.08960K562PTBP1
ZFP36ENSG00000128016.4308.12910418.38890-0.441302.792101.71810K562PUM1
ZFP36ENSG00000128016.41090.83730411.604701.4060026.3386024.65920K562PUS1
ZFP36ENSG00000128016.4835.89400401.062201.0594016.5421015.07940K562RBM15
ZFP36ENSG00000128016.4242.0760095.543201.3411010.932109.09860K562RBM22
ZFP36ENSG00000128016.4175.0657093.152000.910104.403302.51180K562RBM34
ZFP36ENSG00000128016.4621.78600281.513401.143102.910001.32590K562RBM39
ZFP36ENSG00000128016.4285.48020147.405900.953506.868105.30480K562RCC2
ZFP36ENSG00000128016.4586.61410209.169201.487607.498505.18650K562SF1
ZFP36ENSG00000128016.4486.12910240.394501.015802.718901.50430K562SNRNP200
ZFP36ENSG00000128016.4295.17030139.746501.078604.869103.39260K562SRFBP1
ZFP36ENSG00000128016.4160.2463097.705800.713702.805602.09500K562SRSF1
ZFP36ENSG00000128016.4325.94790205.958300.662203.722002.47390K562SRSF4
ZFP36ENSG00000128016.4152.4147092.286100.723702.847801.78050K562SRSF5
ZFP36ENSG00000128016.4318.81570454.04400-0.510103.012701.58740K562SSRP1
ZFP36ENSG00000128016.4184.07930284.20210-0.626603.749502.79290K562SYNCRIP
ZFP36ENSG00000128016.4200.7962098.875601.021905.903104.84340K562TARDBP
ZFP36ENSG00000128016.4166.9054095.379000.807203.674102.71230K562TIA1
ZFP36ENSG00000128016.4162.8059093.616600.798203.239302.04110K562TRA2A
ZFP36ENSG00000128016.4266.08150165.101800.688403.817402.67110K562TRIM56
ZFP36ENSG00000128016.4172.3203092.956000.890403.899502.55760K562U2AF1
ZFP36ENSG00000128016.4792.69560417.343100.925404.587402.76530K562UTP18
ZFP36ENSG00000128016.4295.75250523.37510-0.823506.890605.60980K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZFP36 is not available on ENCORE database.






No RBPs affect the alternative splcing events of ZFP36 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for ZFP36 is not avaliable on ENCORE database.