USB1

General Information

Gene Name       : USB1
Gene ID             : ENSG00000103005.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: USB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878USB1ENSG00000103005.1123.7127.0325.37ENCSR000AEF
HepG2USB1ENSG00000103005.1170.8538.7154.78ENCSR985KAT
K562USB1ENSG00000103005.1167.8643.3355.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for USB1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • USB1 RNA is bound by 14 proteins.  







eCLIP assay for USB1 is not avaliable on ENCORE database.





14 proteins are bound to USB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr165805453458054646+3'-UTR4.8405512.84094HepG2PCBP2
chr165805439958054480+3'-UTR3.682769.50076K562MATR3
chr165805452358054713+3'-UTR3.9585323.85511HepG2MATR3
chr165805504458055122+3'-UTR4.591798.27548K562UPF1
chr165805120758051307+3'-UTR,CDS,intron-Proximal3.305633.03452HepG2U2AF2
chr165805512258055174+3'-UTR3.765664.82552K562UPF1
chr165805454358054717+3'-UTR4.7909826.69601K562MATR3
chr165805413558054219+3'-UTR,CDS3.627124.68902HepG2PPIG
chr165805513658055202+3'-UTR3.664715.02737K562IGF2BP2
chr165805460458054750+3'-UTR4.2285515.71012K562ILF3
chr165805446258054519+3'-UTR6.4921119.77867HepG2PTBP1
chr165805513658055202+3'-UTR4.035653.98311K562IGF2BP1
chr165805464658054711+3'-UTR3.721428.11844HepG2PCBP2
chr165805446558054535+3'-UTR5.6167438.25150K562PTBP1
chr165805514058055207+3'-UTR3.600743.38325HepG2IGF2BP1
chr165805434958054462+3'-UTR5.1484031.48342HepG2PTBP1
chr165805111858051239+3'-UTR,CDS,intron-Distal,intron-Proximal6.3387815.11298K562SF3B4
chr165805413258054190+3'-UTR,CDS4.010183.31330K562UPF1
chr165805434758054398+3'-UTR6.7469946.25217K562PTBP1
chr165805480558054874+3'-UTR4.703835.59066HepG2IGF2BP1
chr165804383258043945+3'-UTR,CDS,intron-Distal,intron-Proximal3.728283.14999HepG2GRWD1
chr165805453458054736+3'-UTR5.5128069.02776HepG2PTBP1
chr165805439858054459+3'-UTR7.5887660.70493K562PTBP1
chr165805505058055112+3'-UTR3.820055.70297K562TIA1
chr165805463658054728+3'-UTR6.81292400.00000K562PTBP1
chr165805454358054636+3'-UTR7.3327181.16954K562PTBP1
chr165803638258036419+5'-UTR,CDS,intron-Proximal4.266233.32488HepG2DDX3X
chr165803534658035486+5'-UTR,CDS,intron-Distal,intron-Proximal4.4663510.03874HepG2DDX3X
chr165803534658035481+5'-UTR,CDS,intron-Distal4.7502814.20952K562DDX3X
chr165805287558052937+CDS,intron-Proximal3.383834.91258K562YBX3
chr165805111558051164+intron-Distal,intron-Proximal3.367635.78448HepG2SF3B4
chr165805116458051214+intron-Proximal4.163468.21012HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for USB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for USB1 is not available on ENCORE database.

  • 92 RBPs can affect the levels of USB1.  








The Knockdown/knockout RNA-Seq assay for USB1 is not available on ENCORE database.





92 RBPs can affect the gene expression of USB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
USB1ENSG00000103005.71859.289601306.464900.5090010.915309.87470HepG2ACO1
USB1ENSG00000103005.72219.114001242.763300.836309.717808.78770HepG2AKAP1
USB1ENSG00000103005.72178.450601270.142200.778209.294907.51210HepG2AKAP8
USB1ENSG00000103005.71584.085501312.599900.271103.046402.24560HepG2AKAP8L
USB1ENSG00000103005.71338.749801028.220300.380602.641701.87440HepG2ASCC1
USB1ENSG00000103005.72451.215401986.589900.303104.358303.53110HepG2AUH
USB1ENSG00000103005.71748.182401311.961700.414002.324601.46760HepG2BCCIP
USB1ENSG00000103005.72152.534701398.151900.622408.557907.57460HepG2BOP1
USB1ENSG00000103005.71402.315301038.663600.433004.803303.82060HepG2CALR
USB1ENSG00000103005.71419.49330976.900100.539004.967503.94740HepG2CIRBP
USB1ENSG00000103005.7821.078201283.60550-0.644607.030005.97340HepG2CPSF6
USB1ENSG00000103005.71272.094601501.17810-0.238902.721701.98590HepG2DAZAP1
USB1ENSG00000103005.71476.993601208.291100.289603.843202.88050HepG2DDX19B
USB1ENSG00000103005.72290.443301190.340200.9442014.1512012.84550HepG2DDX3X
USB1ENSG00000103005.71692.756701290.001100.391902.134001.44670HepG2DDX55
USB1ENSG00000103005.71972.341101022.840200.9472012.1794010.99150HepG2DDX6
USB1ENSG00000103005.71159.843001003.126500.209302.092201.51020HepG2DNAJC2
USB1ENSG00000103005.7896.74400690.920600.376102.452801.40840HepG2EFTUD2
USB1ENSG00000103005.7591.97160848.46140-0.519303.304402.08480HepG2AGO1
USB1ENSG00000103005.71053.81010672.807900.647206.272504.95030HepG2EIF3D
USB1ENSG00000103005.71179.610901487.18560-0.334302.575801.52060HepG2ESF1
USB1ENSG00000103005.72608.003302280.932600.193202.000001.47090HepG2ETF1
USB1ENSG00000103005.71697.588601276.646300.411004.335003.29250HepG2EWSR1
USB1ENSG00000103005.7844.925201073.64810-0.345602.529101.31360HepG2FKBP4
USB1ENSG00000103005.7467.91420753.19120-0.686807.287706.04990HepG2FUBP3
USB1ENSG00000103005.71547.520101115.706200.471902.814701.69160HepG2FUS
USB1ENSG00000103005.71794.061201096.332100.710408.382007.23040HepG2FXR1
USB1ENSG00000103005.71615.279101016.769300.667706.783905.76230HepG2G3BP1
USB1ENSG00000103005.7955.84440599.041300.674006.862605.45900HepG2GEMIN5
USB1ENSG00000103005.71078.411301455.13760-0.432202.089201.52910HepG2GPKOW
USB1ENSG00000103005.71522.099401136.445600.421403.288102.53780HepG2HNRNPC
USB1ENSG00000103005.71356.436601030.130000.396903.128002.38670HepG2HNRNPK
USB1ENSG00000103005.71003.839701388.65820-0.468203.908703.17300HepG2HNRNPLL
USB1ENSG00000103005.7977.887201196.06630-0.290602.204401.35420HepG2HNRNPM
USB1ENSG00000103005.7857.109601128.92980-0.397404.564703.80230HepG2HNRNPU
USB1ENSG00000103005.71744.909402069.92520-0.246402.141901.49910HepG2IGF2BP1
USB1ENSG00000103005.71948.522201033.438600.9148012.4072011.09340HepG2IGF2BP2
USB1ENSG00000103005.7954.710201194.27040-0.323004.220802.97590HepG2KIF1C
USB1ENSG00000103005.72217.468801595.790800.474503.325102.41420HepG2LARP4
USB1ENSG00000103005.72006.412401102.781000.8634010.571709.39800HepG2MATR3
USB1ENSG00000103005.71320.52000704.136900.907107.422105.78820HepG2METAP2
USB1ENSG00000103005.71022.990201416.09620-0.469102.382001.48960HepG2MTPAP
USB1ENSG00000103005.7845.792601178.11530-0.478104.746503.15830HepG2NAA15
USB1ENSG00000103005.72191.042801128.697500.9569013.9403012.58720HepG2NCBP2
USB1ENSG00000103005.7921.552001231.25970-0.418003.355302.53170HepG2NSUN2
USB1ENSG00000103005.71482.479901109.010400.418606.190905.33870HepG2PCBP1
USB1ENSG00000103005.7699.531001006.90990-0.525506.757005.64600HepG2PPIL4
USB1ENSG00000103005.71192.341801410.58290-0.242502.419101.69000HepG2PRPF4
USB1ENSG00000103005.71555.316701110.167600.486302.743201.52990HepG2PRPF6
USB1ENSG00000103005.71734.732601128.456700.6203013.0822012.06810HepG2PTBP1
USB1ENSG00000103005.71888.650701421.004400.410304.430003.69650HepG2PUF60
USB1ENSG00000103005.71770.537901508.497200.231003.384902.74280HepG2PUM1
USB1ENSG00000103005.71447.393401018.962800.506302.456801.79070HepG2RAVER1
USB1ENSG00000103005.71986.481201400.944200.503707.041705.75940HepG2RBM15
USB1ENSG00000103005.73595.739301906.424800.9153026.0418024.77640HepG2RBM22
USB1ENSG00000103005.71907.672601255.866300.6030012.5081011.51260HepG2NELFE
USB1ENSG00000103005.71670.61160654.698201.3514034.3088032.55200HepG2RPS19
USB1ENSG00000103005.71488.634401049.742300.503902.998402.16630HepG2RPS2
USB1ENSG00000103005.71010.31880657.049800.620605.965804.60110HepG2SERBP1
USB1ENSG00000103005.72715.481301492.299700.863609.485508.18070HepG2SF3A3
USB1ENSG00000103005.71671.084201174.874200.508208.934507.96420HepG2SF3B4
USB1ENSG00000103005.7746.979801362.60020-0.8672023.4613021.81860HepG2SLBP
USB1ENSG00000103005.71447.866901172.370500.304404.390803.61370HepG2SMN1
USB1ENSG00000103005.73484.349602153.213900.6943024.8225023.71230HepG2SRFBP1
USB1ENSG00000103005.71969.579701226.312200.6835017.1167016.15360HepG2SRSF1
USB1ENSG00000103005.71832.167401403.080700.384906.190605.30720HepG2SRSF5
USB1ENSG00000103005.71281.16930997.668500.360704.773604.08590HepG2SRSF9
USB1ENSG00000103005.71266.715401869.45980-0.5615012.4579011.52330HepG2SSB
USB1ENSG00000103005.71474.929201102.251300.420103.077102.49070HepG2TAF15
USB1ENSG00000103005.7954.970701106.77980-0.212801.773401.30120HepG2TRIM56
USB1ENSG00000103005.72454.907501469.559700.740209.152607.59160HepG2UBE2L3
USB1ENSG00000103005.71089.95990758.463400.523004.051103.13300HepG2UCHL5
USB1ENSG00000103005.71794.238501323.441200.439003.499302.72850HepG2UPF1
USB1ENSG00000103005.72435.761201277.731100.9307034.5763032.81770HepG2UTP3
USB1ENSG00000103005.71633.706701120.791400.543503.617102.40470HepG2XRCC6
USB1ENSG00000103005.7874.658001264.02650-0.531204.820203.87330HepG2XRN2
USB1ENSG00000103005.71128.620901392.09710-0.302704.018703.23340HepG2ZC3H8
USB1ENSG00000103005.72712.469101455.532600.8980042.6230041.14210HepG2ZNF622
USB1ENSG00000103005.71807.686702511.91670-0.474607.250905.69700K562CELF1
USB1ENSG00000103005.7841.66850649.453100.373902.910201.84030K562DDX3X
USB1ENSG00000103005.71405.925101682.53720-0.259102.317701.71220K562DDX47
USB1ENSG00000103005.7614.32040940.77490-0.614904.431902.77760K562EEF2
USB1ENSG00000103005.7533.09840734.12220-0.461602.996701.81460K562FKBP4
USB1ENSG00000103005.71308.17170705.616400.8905019.5057018.01360K562FXR1
USB1ENSG00000103005.71048.311101288.80340-0.298002.397301.40050K562HNRNPA1
USB1ENSG00000103005.71114.27450845.790700.397603.493702.83360K562HNRNPC
USB1ENSG00000103005.7858.136601427.30600-0.7340013.6925011.76320K562HNRNPU
USB1ENSG00000103005.71274.005801820.95450-0.515305.463104.36140K562HSPD1
USB1ENSG00000103005.71046.26120818.888600.353402.709801.33860K562LARP7
USB1ENSG00000103005.7997.88080763.940000.385302.559901.75090K562MAGOH
USB1ENSG00000103005.71062.280801308.86890-0.301203.420902.52610K562MTPAP
USB1ENSG00000103005.71141.205601554.14390-0.445603.527802.58850K562PCBP3
USB1ENSG00000103005.7958.743001192.04880-0.314202.654101.87210K562POLR2G
USB1ENSG00000103005.71155.64270742.250800.638608.071206.97780K562PTBP1
USB1ENSG00000103005.71048.56360711.472500.559405.684504.42530K562RBM22
USB1ENSG00000103005.7594.58960847.15110-0.510704.186402.61070K562SLBP
USB1ENSG00000103005.7837.02630655.820800.351902.434501.48740K562SRFBP1
USB1ENSG00000103005.71011.96820727.706100.475604.649703.73690K562SRSF1
USB1ENSG00000103005.7486.84230692.13390-0.507602.808401.51970K562SSB
USB1ENSG00000103005.71591.065301944.69770-0.289602.968801.40750K562SUCLG1
USB1ENSG00000103005.71434.842701195.701000.262902.168501.44110K562SYNCRIP
USB1ENSG00000103005.71056.97490736.372100.521303.140402.38650K562TARDBP
USB1ENSG00000103005.7745.17070511.400000.543003.822102.49480K562U2AF1
USB1ENSG00000103005.71288.316601541.99060-0.259302.934002.19450K562UPF1
USB1ENSG00000103005.71115.326001547.21830-0.472203.731602.32580K562UTP3
USB1ENSG00000103005.71057.543001319.43220-0.319202.678901.81570K562WDR3
USB1ENSG00000103005.71571.887802032.53540-0.370802.501701.68930K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for USB1 is not available on ENCORE database.





8 RBPs can affect the splicing of USB1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUSB1ENSG00000103005.7chr16+580481765804823058043832580440165805123758051321-0.183000.000000.00001excludedK562AQR
SEUSB1ENSG00000103005.7chr16+580481765804823058043832580440165805123758051284-0.088000.000000.00095excludedHepG2SRSF7
SEUSB1ENSG00000103005.7chr16+580481765804823058043832580440165805123758051321-0.112000.005610.06790excludedK562PUS1
SEUSB1ENSG00000103005.7chr16+5804817658048230580438325804401658051237580512840.079000.000530.01527includedHepG2SRSF1
SEUSB1ENSG00000103005.7chr16+5804817658048230580438325804401658051237580513210.073000.000050.02790includedHepG2BCCIP
SEUSB1ENSG00000103005.7chr16+5804817658048230580438325804401658051237580513210.063000.000540.08767includedHepG2DDX55
SEUSB1ENSG00000103005.7chr16+5804817658048230580438325804401658051237580513210.083000.000020.00126includedHepG2HNRNPC
SEUSB1ENSG00000103005.7chr16+5804817658048230580438325804401658051237580512840.164000.000070.00201includedK562HNRNPC
A5SSUSB1ENSG00000103005.7chr16+5805287558053110580528755805295958054044580555210.079000.000000.00001longerK562AQR
MXEUSB1ENSG00000103005.7chr16+5804817658048230580512375805134358043832580440165805287558052959-0.148000.000130.013522includedHepG2NOL12
MXEUSB1ENSG00000103005.7chr16+5804817658048230580512375805134358043832580440165805287558052959-0.168000.000010.001652includedHepG2SRSF7

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for USB1 is not avaliable on ENCORE database.