SSX2IP

General Information

Gene Name : SSX2IP
Gene ID : ENSG00000117155.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SSX2IP)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SSX2IP	ENSG00000117155.16	9.14	8.38	8.76	ENCSR000AEF
HepG2	SSX2IP	ENSG00000117155.16	5.33	11.97	8.65	ENCSR985KAT
K562	SSX2IP	ENSG00000117155.16	39.26	41.77	40.52	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SSX2IP is not avaliable on ENCORE database.

Proteins bound to RNA

SSX2IP RNA is bound by 23 proteins.

CanvasJS.com

eCLIP assay for SSX2IP is not avaliable on ENCORE database.

23 proteins are bound to SSX2IP RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	85111812	85111903	-	3'-UTR,intron-Distal	4.37538	400.00000	K562	PUM2
chr1	85112679	85112794	-	3'-UTR,intron-Distal	3.65700	41.43387	K562	PUM2
chr1	85110987	85111084	-	3'-UTR,intron-Distal	3.65472	18.82734	K562	PUM2
chr1	85121511	85121578	-	CDS,intron-Distal,intron-Proximal	3.65459	14.47436	K562	ZNF622
chr1	85112879	85112924	-	3'-UTR,intron-Distal,intron-Proximal	4.09392	14.38705	K562	PUM2
chr1	85131942	85132074	-	intron-Distal,intron-Proximal	6.46014	13.80520	K562	QKI
chr1	85137218	85137292	-	intron-Distal	4.25249	13.78079	K562	KHSRP
chr1	85121513	85121576	-	CDS,intron-Distal,intron-Proximal	3.54323	13.00249	K562	UCHL5
chr1	85156050	85156142	-	5'-UTR,intron-Distal,intron-Proximal	5.93062	12.67847	K562	DDX3X
chr1	85133128	85133202	-	intron-Distal	3.89038	12.31231	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 64 entries

eCLIP assay for SSX2IP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SSX2IP is not available on ENCORE database.
103 RBPs can affect the levels of SSX2IP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SSX2IP is not available on ENCORE database.

103 RBPs can affect the gene expression of SSX2IP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SSX2IP	ENSG00000117155.12	131.35910	397.54700	-1.59760	25.96730	24.72150	HepG2	ZNF622
SSX2IP	ENSG00000117155.12	144.54420	478.20900	-1.72610	21.87020	20.17250	HepG2	CPSF6
SSX2IP	ENSG00000117155.12	126.82180	355.47160	-1.48690	20.88250	18.64350	HepG2	HDGF
SSX2IP	ENSG00000117155.12	5539.10370	3751.33940	0.56210	16.79930	15.31570	K562	DDX47
SSX2IP	ENSG00000117155.12	5037.35760	2772.59570	0.86130	16.04130	14.77550	K562	PUS1
SSX2IP	ENSG00000117155.12	890.74740	386.26580	1.20530	15.32140	14.40050	HepG2	SRSF1
SSX2IP	ENSG00000117155.12	206.11270	504.16740	-1.29050	14.61650	13.16230	HepG2	TARDBP
SSX2IP	ENSG00000117155.12	288.15030	511.20270	-0.82710	10.72760	9.47810	HepG2	HNRNPL
SSX2IP	ENSG00000117155.12	139.65550	341.96970	-1.29200	9.72000	8.63840	HepG2	DDX6
SSX2IP	ENSG00000117155.12	3562.42850	2585.01420	0.46260	10.05330	8.55640	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 116 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SSX2IP is not available on ENCORE database.

10 RBPs can affect the splicing of SSX2IP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SSX2IP	ENSG00000117155.12	chr1	-	85136859	85136991			85136328	85136498	85156053	85156228	-0.28200	0.00000	0.00009	excluded	K562	AGGF1
A3SS	SSX2IP	ENSG00000117155.12	chr1	-	85130099	85130251			85130099	85130235	85131804	85131939	0.05800	0.00000	0.00000	longer	K562	AQR
A3SS	SSX2IP	ENSG00000117155.12	chr1	-	85136328	85136517			85136328	85136498	85136859	85137021	0.06800	0.00000	0.00001	longer	K562	AQR
SE	SSX2IP	ENSG00000117155.12	chr1	-	85136859	85136991			85136328	85136498	85156053	85156228	-0.23000	0.00003	0.00798	excluded	K562	SRSF7
SE	SSX2IP	ENSG00000117155.12	chr1	-	85136859	85136991			85136328	85136498	85155836	85155987	-0.19600	0.00003	0.00144	excluded	K562	RBM15
SE	SSX2IP	ENSG00000117155.12	chr1	-	85130099	85130235			85128137	85128213	85135363	85135576	-0.06500	0.00007	0.00126	excluded	K562	AQR
SE	SSX2IP	ENSG00000117155.12	chr1	-	85136859	85136991			85136328	85136498	85156053	85156228	-0.26300	0.00007	0.00182	excluded	K562	PUS1
MXE	SSX2IP	ENSG00000117155.12	chr1	-	85130099	85130235	85131804	85131939	85128137	85128213	85135363	85135576	0.05700	0.00019	0.00522	1included	K562	SF3B4
MXE	SSX2IP	ENSG00000117155.12	chr1	-	85116044	85116210	85117565	85117680	85109389	85113290	85121514	85121688	-0.23900	0.00021	0.00603	2included	K562	DROSHA
MXE	SSX2IP	ENSG00000117155.12	chr1	-	85116044	85116210	85117565	85117680	85109389	85113290	85121514	85121688	-0.22800	0.00049	0.01536	2included	K562	HNRNPUL1

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SSX2IP

General Information

Functions

Localization

Domains (AlphaFold: SSX2IP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SSX2IP is not avaliable on ENCORE database.

23 proteins are bound to SSX2IP RNA:

eCLIP assay for SSX2IP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SSX2IP is not available on ENCORE database.

103 RBPs can affect the gene expression of SSX2IP :

The Knockdown/knockout RNA-Seq assay for SSX2IP is not available on ENCORE database.

10 RBPs can affect the splicing of SSX2IP :

The Knockdown/knockout RNA-Seq assay for SSX2IP is not avaliable on ENCORE database.