SSR2

General Information

Gene Name       : SSR2
Gene ID             : ENSG00000163479.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SSR2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SSR2ENSG00000163479.13318.17301.41309.79ENCSR000AEF
HepG2SSR2ENSG00000163479.13229.57253.74241.66ENCSR985KAT
K562SSR2ENSG00000163479.13253.08270.23261.66ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SSR2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SSR2 RNA is bound by 15 proteins.  







eCLIP assay for SSR2 is not avaliable on ENCORE database.





15 proteins are bound to SSR2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1155979120155979182-3'-UTR,intron-Distal,intron-Proximal4.094027.19744K562IGF2BP2
chr1155979182155979229-3'-UTR,intron-Distal3.939775.02143K562IGF2BP2
chr1155979376155979435-3'-UTR,CDS,intron-Distal3.412068.24214HepG2LARP4
chr1155981599155981610-3'-UTR,CDS,intron-Distal,intron-Proximal3.075134.12588K562SND1
chr1155981626155981660-3'-UTR,CDS,intron-Distal3.181758.20394K562YBX3
chr1155979120155979229-3'-UTR,intron-Distal,intron-Proximal3.031884.63684K562IGF2BP1
chr1155979030155979114-3'-UTR,intron-Distal,intron-Proximal3.8185110.73443K562UPF1
chr1155979046155979101-3'-UTR,intron-Distal,intron-Proximal5.295177.21030HepG2UPF1
chr1155978953155979038-3'-UTR,intron-Distal,intron-Proximal4.1094413.56562HepG2LARP4
chr1155979131155979231-3'-UTR,intron-Distal,intron-Proximal3.296156.16306K562METAP2
chr1155979286155979445-3'-UTR,CDS,intron-Distal,intron-Proximal3.3519618.55048HepG2RPS3
chr1155979182155979256-3'-UTR,intron-Distal,intron-Proximal4.076545.16954K562PCBP1
chr1155981660155981678-3'-UTR,CDS,intron-Distal3.5017213.29726K562YBX3
chr1155981599155981604-3'-UTR,CDS,intron-Distal,intron-Proximal4.068705.82787HepG2SND1
chr1155979412155979429-3'-UTR,CDS,intron-Distal4.5095721.37415HepG2SND1
chr1155979118155979232-3'-UTR,intron-Distal,intron-Proximal3.7512516.44568HepG2AKAP1
chr1155981604155981679-3'-UTR,CDS,intron-Distal,intron-Proximal5.0946825.58099HepG2SND1
chr1155979330155979443-3'-UTR,CDS,intron-Distal,intron-Proximal3.4416326.22821K562SND1
chr1155979429155979443-3'-UTR,CDS,intron-Distal4.5474617.08371HepG2SND1
chr1155978951155979038-3'-UTR,intron-Distal,intron-Proximal5.9642611.00768HepG2UPF1
chr1155979347155979412-3'-UTR,CDS,intron-Distal4.5233028.93513HepG2SND1
chr1155979238155979320-3'-UTR,intron-Distal,intron-Proximal5.7504210.75082HepG2UPF1
chr1155979423155979442-3'-UTR,CDS,intron-Distal3.330753.14881K562IGF2BP2
chr1155978950155979033-3'-UTR,intron-Distal,intron-Proximal3.0835110.74589K562YBX3
chr1155979006155979099-3'-UTR,intron-Distal,intron-Proximal4.5677911.81456HepG2SUB1
chr1155979122155979242-3'-UTR,intron-Distal,intron-Proximal3.4260727.25411HepG2DDX55
chr1155978953155979006-3'-UTR,intron-Distal3.012708.77734HepG2SUB1
chr1155979131155979237-3'-UTR,intron-Distal,intron-Proximal3.7096532.05327HepG2LARP4
chr1155981610155981679-3'-UTR,CDS,intron-Distal,intron-Proximal4.2360418.90749K562SND1
chr1155979038155979118-3'-UTR,intron-Distal,intron-Proximal3.9208410.50798HepG2LARP4
chr1155978872155979030-3'-UTR,intron-Distal,intron-Proximal3.0843710.33557K562UPF1
chr1155979110155979238-3'-UTR,intron-Distal,intron-Proximal6.4743633.27376HepG2UPF1
chr1155988059155988071-5'-UTR,CDS,intron-Distal,intron-Proximal3.9110012.05041K562SND1
chr1155988071155988145-5'-UTR,CDS,intron-Distal3.7264925.47089K562SND1
chr1155988058155988138-5'-UTR,CDS,intron-Distal,intron-Proximal3.6685812.92533HepG2RPS3
chr1155988145155988160-5'-UTR,CDS,intron-Distal,intron-Proximal3.373408.11686K562SND1
chr1155988058155988097-5'-UTR,CDS,intron-Distal,intron-Proximal4.0995511.75419HepG2SND1
chr1155990675155990723-5'-UTR,CDS,intron-Distal,intron-Proximal3.473816.35230K562DDX3X
chr1155984727155984787-CDS,intron-Distal,intron-Proximal3.091496.55928HepG2PRPF8
chr1155989809155989937-CDS,intron-Distal3.2680124.68727K562SND1
chr1155984763155984791-CDS,intron-Distal4.2683828.12864K562YBX3
chr1155984751155984755-CDS,intron-Distal,intron-Proximal5.1981113.41311HepG2SND1
chr1155989814155989917-CDS,intron-Distal3.4529716.40592HepG2SND1
chr1155989880155989958-CDS,intron-Distal,intron-Proximal4.4496110.58921HepG2SUB1
chr1155984800155984862-CDS,intron-Distal,intron-Proximal3.9989119.60990K562SND1
chr1155989822155989872-CDS,intron-Distal4.794444.29122HepG2SUB1
chr1155984750155984762-CDS,intron-Distal,intron-Proximal3.6634813.95144K562YBX3
chr1155984793155984861-CDS,intron-Distal,intron-Proximal3.667249.66228HepG2RPS3
chr1155989803155989809-CDS,intron-Distal,intron-Proximal3.756038.01541K562SND1
chr1155989825155989891-CDS,intron-Distal5.9988410.45530HepG2RPS3
chr1155984802155984808-CDS,intron-Distal4.7571215.14633K562YBX3
chr1155984755155984785-CDS,intron-Distal4.7777313.28274HepG2SND1
chr1155984845155984861-CDS,intron-Distal,intron-Proximal3.8665010.34651HepG2SND1
chr1155984750155984794-CDS,intron-Distal,intron-Proximal3.9767311.75161K562SND1
chr1155984789155984845-CDS,intron-Distal3.358729.09308HepG2SND1
chr1155984791155984802-CDS,intron-Distal4.9329225.24579K562YBX3
chr1155989891155989945-CDS,intron-Distal3.660875.18795HepG2RPS3
chr1155983507155983604-intron-Distal3.317083.27944K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SSR2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SSR2 is not available on ENCORE database.

  • 107 RBPs can affect the levels of SSR2.  








The Knockdown/knockout RNA-Seq assay for SSR2 is not available on ENCORE database.





107 RBPs can affect the gene expression of SSR2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SSR2ENSG00000163479.91680.738802419.05340-0.525306.663205.07510HepG2AATF
SSR2ENSG00000163479.92434.868803201.93610-0.395103.208202.19160HepG2ABCF1
SSR2ENSG00000163479.96451.842204700.574000.456803.934803.31750HepG2AKAP1
SSR2ENSG00000163479.92286.402102633.95900-0.204202.306301.59900HepG2AKAP8L
SSR2ENSG00000163479.92715.750601830.697800.568907.590606.65970HepG2BOP1
SSR2ENSG00000163479.95451.896703695.152500.561007.077005.88100HepG2CIRBP
SSR2ENSG00000163479.93040.056601680.656000.8550015.0263013.58150HepG2CPSF6
SSR2ENSG00000163479.93534.691302707.366000.384606.412104.86760HepG2YBX3
SSR2ENSG00000163479.93278.232304019.85220-0.294204.205303.44380HepG2CELF1
SSR2ENSG00000163479.95242.818604321.989700.278506.821305.73340HepG2DAZAP1
SSR2ENSG00000163479.92153.784302668.65270-0.309202.748802.07210HepG2DDX21
SSR2ENSG00000163479.91628.011602116.29980-0.378404.092902.47210HepG2DDX52
SSR2ENSG00000163479.92137.942202508.27830-0.230502.813802.13100HepG2DKC1
SSR2ENSG00000163479.92652.853402049.609500.372103.268202.29150HepG2EIF3D
SSR2ENSG00000163479.92058.263202520.27570-0.292202.849701.75460HepG2EIF3G
SSR2ENSG00000163479.92742.493804000.93940-0.544904.134003.30190HepG2EIF4B
SSR2ENSG00000163479.92621.613804084.77800-0.639809.323007.86360HepG2EIF4G2
SSR2ENSG00000163479.93096.968604283.36490-0.4679010.201409.16620HepG2ETF1
SSR2ENSG00000163479.93063.197204145.98420-0.436704.118403.28590HepG2FXR1
SSR2ENSG00000163479.92229.886403846.13730-0.7864010.578209.31810HepG2G3BP1
SSR2ENSG00000163479.93117.388504082.99930-0.389303.531902.51980HepG2G3BP2
SSR2ENSG00000163479.91784.254602832.60590-0.666804.264002.50850HepG2HLTF
SSR2ENSG00000163479.93096.775403708.68180-0.260104.271903.40170HepG2HNRNPF
SSR2ENSG00000163479.92621.084902965.57370-0.178101.943301.42640HepG2HNRNPU
SSR2ENSG00000163479.93765.078502861.702900.395702.624201.43180HepG2HSPD1
SSR2ENSG00000163479.92902.003503909.56040-0.430003.974203.17940HepG2IGF2BP2
SSR2ENSG00000163479.93395.546703029.231500.164602.549801.84330HepG2ILF2
SSR2ENSG00000163479.91959.894302396.52890-0.290205.147503.76540HepG2KIF1C
SSR2ENSG00000163479.93045.904104147.43060-0.445304.145303.34530HepG2MAGOH
SSR2ENSG00000163479.92643.478404170.68310-0.657807.416606.42190HepG2MATR3
SSR2ENSG00000163479.92727.463104268.95850-0.646307.676706.64650HepG2NCBP2
SSR2ENSG00000163479.91134.339402391.61020-1.076108.624606.64690HepG2NONO
SSR2ENSG00000163479.91246.676001612.11200-0.370902.854502.09390HepG2NSUN2
SSR2ENSG00000163479.91180.146502473.40530-1.067503.555201.47860HepG2NUFIP2
SSR2ENSG00000163479.93717.238702309.349700.686604.469103.32490HepG2PABPC1
SSR2ENSG00000163479.92965.269203801.93480-0.358602.792202.06710HepG2PABPC4
SSR2ENSG00000163479.91821.654002554.76570-0.487905.846404.76650HepG2PRPF4
SSR2ENSG00000163479.92006.404702940.45850-0.551403.620302.23710HepG2PRPF6
SSR2ENSG00000163479.91338.506802009.56050-0.586305.868704.74090HepG2PRPF8
SSR2ENSG00000163479.92228.567304001.49990-0.8444032.1930030.73630HepG2PTBP1
SSR2ENSG00000163479.93027.658604091.16390-0.434304.520103.77960HepG2PUF60
SSR2ENSG00000163479.95007.218804339.820200.206302.139101.54620HepG2PUM2
SSR2ENSG00000163479.92180.546802670.41350-0.292404.837804.06540HepG2PUS1
SSR2ENSG00000163479.91874.443204333.71230-1.2091049.1759047.17140HepG2QKI
SSR2ENSG00000163479.92612.351903144.97990-0.267702.840801.97330HepG2RBM15
SSR2ENSG00000163479.92789.050103933.12660-0.495907.524406.45810HepG2RBM25
SSR2ENSG00000163479.92384.876003092.57070-0.374903.377302.27500HepG2RBM27
SSR2ENSG00000163479.92533.964104453.28100-0.8135031.8670030.45590HepG2NELFE
SSR2ENSG00000163479.92436.846004147.63370-0.7673029.0296027.41360HepG2RECQL
SSR2ENSG00000163479.92256.573603995.64980-0.8243017.1033015.69080HepG2RPLP0
SSR2ENSG00000163479.91371.086001994.42200-0.540707.512906.56020HepG2RPS19
SSR2ENSG00000163479.91997.539502852.16000-0.513805.893504.74890HepG2RPS2
SSR2ENSG00000163479.91355.466702936.88160-1.1155012.347209.40940HepG2RTF1
SSR2ENSG00000163479.94911.759702640.961200.8951048.9370046.75390HepG2SAFB2
SSR2ENSG00000163479.94495.262303214.499600.483702.215701.61130HepG2SF3A3
SSR2ENSG00000163479.9658.898801799.48790-1.4495034.4980032.34650HepG2SF3B1
SSR2ENSG00000163479.92060.986004166.06880-1.0154047.8260045.95920HepG2SF3B4
SSR2ENSG00000163479.91192.788702333.94540-0.968402.834301.36320HepG2SFPQ
SSR2ENSG00000163479.93224.035604348.47760-0.4316011.3491010.53210HepG2SRSF1
SSR2ENSG00000163479.92984.691903643.77070-0.287904.062003.24390HepG2SRSF7
SSR2ENSG00000163479.92702.639603537.72130-0.388508.592307.71520HepG2SRSF9
SSR2ENSG00000163479.92296.514803510.53270-0.6122019.4579018.36210HepG2SSB
SSR2ENSG00000163479.91619.924302207.10820-0.446203.026001.87230HepG2STIP1
SSR2ENSG00000163479.93997.101104593.97990-0.200803.053302.40600HepG2SUCLG1
SSR2ENSG00000163479.93156.286702182.853300.531907.636606.12990HepG2SUPT6H
SSR2ENSG00000163479.91601.929302593.02970-0.694807.423406.40170HepG2SUPV3L1
SSR2ENSG00000163479.92470.952303908.59160-0.6616017.4643016.23030HepG2TAF15
SSR2ENSG00000163479.92585.767303591.45220-0.474007.112405.78320HepG2TIA1
SSR2ENSG00000163479.91572.718002881.52440-0.8736022.6028021.43100HepG2TIAL1
SSR2ENSG00000163479.92972.343804230.95640-0.509404.990503.84380HepG2UBE2L3
SSR2ENSG00000163479.9639.203801531.82700-1.2609022.8708020.77530HepG2UCHL5
SSR2ENSG00000163479.93103.003602752.308000.172902.104601.56790HepG2UTP3
SSR2ENSG00000163479.91826.299002696.94900-0.562404.335602.68000HepG2ZRANB2
SSR2ENSG00000163479.92114.719502573.83280-0.283502.406301.31200K562AARS
SSR2ENSG00000163479.95707.667304806.601600.247804.128503.46010K562AGGF1
SSR2ENSG00000163479.96495.160905281.633300.298302.888601.87770K562AKAP8
SSR2ENSG00000163479.95527.274103795.242500.542307.669106.77310K562AQR
SSR2ENSG00000163479.92593.828701729.911200.584307.021405.61130K562BOP1
SSR2ENSG00000163479.93803.978103294.019800.207602.502701.45400K562CPEB4
SSR2ENSG00000163479.92595.797201839.312200.496907.154505.88530K562CPSF6
SSR2ENSG00000163479.92611.245603166.14320-0.278003.626402.23870K562DDX21
SSR2ENSG00000163479.93127.740102503.764700.320904.669302.33390K562DDX24
SSR2ENSG00000163479.92836.060402362.991300.263202.406901.43780K562DDX3X
SSR2ENSG00000163479.92945.467703408.93830-0.210802.629401.99210K562DDX47
SSR2ENSG00000163479.96808.237605382.079900.339005.854704.51780K562DKC1
SSR2ENSG00000163479.91477.831501885.33590-0.351302.978701.58100K562DNAJC21
SSR2ENSG00000163479.95235.144403009.490700.7986027.6638025.79900K562EIF2S2
SSR2ENSG00000163479.93551.213602468.707900.524505.311604.17580K562EIF4A3
SSR2ENSG00000163479.93791.682004743.38080-0.323105.506104.20050K562EIF4G2
SSR2ENSG00000163479.93210.227902288.415500.488206.032004.74600K562FIP1L1
SSR2ENSG00000163479.92196.054502567.34630-0.225402.467201.88890K562FXR1
SSR2ENSG00000163479.91661.219702555.40100-0.621305.375704.31520K562G3BP2
SSR2ENSG00000163479.92449.252101756.026700.479905.847404.69710K562GPKOW
SSR2ENSG00000163479.95013.037104010.272400.321903.481902.63640K562GRSF1
SSR2ENSG00000163479.92337.145802816.25200-0.269002.412401.85000K562HNRNPC
SSR2ENSG00000163479.92996.990901882.443400.670805.181903.86140K562HNRNPM
SSR2ENSG00000163479.96733.656603102.340501.1179029.1609026.90290K562HSPD1
SSR2ENSG00000163479.96262.332605080.885300.301503.124401.96440K562MAK16
SSR2ENSG00000163479.93938.978505055.89940-0.360103.756802.44240K562MSI2
SSR2ENSG00000163479.92297.631702634.07780-0.197202.447301.68600K562MTPAP
SSR2ENSG00000163479.95257.830204167.820500.335102.054501.31750K562NAA15
SSR2ENSG00000163479.93029.769002465.200700.297403.228801.89460K562NCBP2
SSR2ENSG00000163479.93649.373602699.826100.434703.609001.52930K562PABPC4
SSR2ENSG00000163479.94754.366102740.983100.794504.231702.94280K562PABPN1
SSR2ENSG00000163479.92262.499202739.29470-0.275902.395601.48840K562PCBP2
SSR2ENSG00000163479.92192.937103135.79750-0.516005.237004.09030K562PCBP3
SSR2ENSG00000163479.91723.005202405.31830-0.481306.712805.47660K562POLR2G
SSR2ENSG00000163479.93992.352002598.076800.619709.041607.33940K562PPIG
SSR2ENSG00000163479.95393.041203257.803600.727103.120501.53870K562PPP1R8
SSR2ENSG00000163479.92542.070402094.481600.279302.066501.41380K562PRPF8
SSR2ENSG00000163479.92180.746002991.44620-0.456006.356805.38530K562PTBP1
SSR2ENSG00000163479.96411.019404960.247500.370004.104203.46210K562PUS1
SSR2ENSG00000163479.93347.543902422.643600.466403.508301.98850K562RBM25
SSR2ENSG00000163479.92180.847603018.11550-0.468804.850103.35590K562NELFE
SSR2ENSG00000163479.91855.741302632.04300-0.504205.378403.91760K562RPS3
SSR2ENSG00000163479.94855.146502506.159400.953904.419002.79050K562SF1
SSR2ENSG00000163479.93788.509202887.931000.391507.152005.88840K562SF3A3
SSR2ENSG00000163479.91010.462601670.27610-0.725105.107203.76420K562SF3B1
SSR2ENSG00000163479.95355.393702879.010000.895304.573002.87370K562SNRNP200
SSR2ENSG00000163479.92568.211002958.75510-0.204202.919401.96140K562SRPK2
SSR2ENSG00000163479.92121.094002540.89890-0.260502.266101.33110K562SRSF4
SSR2ENSG00000163479.92152.799802737.89790-0.346904.156302.27430K562SRSF9
SSR2ENSG00000163479.93299.537102475.772700.414303.293202.07930K562U2AF1
SSR2ENSG00000163479.91646.751602146.24390-0.382203.184502.08890K562UCHL5
SSR2ENSG00000163479.94365.282203103.184100.4922013.8873012.42660K562UPF1
SSR2ENSG00000163479.92163.686902761.24250-0.351806.932205.64740K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SSR2 is not available on ENCORE database.





4 RBPs can affect the splicing of SSR2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESSR2ENSG00000163479.9chr1-155984751155984860155981600155981678155987922155988159-0.072000.001760.01972excludedK562AQR
SESSR2ENSG00000163479.9chr1-155984751155984860155981600155981678155987922155988159-0.068000.003270.09427excludedK562FXR1
SESSR2ENSG00000163479.9chr1-155984751155984860155981600155981678155987922155988159-0.181000.000000.00000excludedHepG2SF3B4
SESSR2ENSG00000163479.9chr1-155984751155984860155981600155981678155987922155988148-0.103000.000050.00161excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SSR2 is not avaliable on ENCORE database.