SPTSSA

General Information

Gene Name       : SPTSSA
Gene ID             : ENSG00000165389.6
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SPTSSA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SPTSSAENSG00000165389.626.6522.5424.59ENCSR000AEF
HepG2SPTSSAENSG00000165389.640.4177.9459.17ENCSR985KAT
K562SPTSSAENSG00000165389.618.3323.9921.16ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SPTSSA is not avaliable on ENCORE database.



Proteins bound to RNA
  • SPTSSA RNA is bound by 27 proteins.  







eCLIP assay for SPTSSA is not avaliable on ENCORE database.





27 proteins are bound to SPTSSA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr143490384134903888-3'-UTR,intron-Distal3.202063.93290HepG2FAM120A
chr143490351834903576-3'-UTR,intron-Distal4.239893.20319K562UPF1
chr143490326534903297-3'-UTR,intron-Distal4.488514.37192HepG2FUBP3
chr143490435034904428-3'-UTR,CDS,intron-Distal3.055665.83767HepG2LARP4
chr143490435634904420-3'-UTR,CDS,intron-Distal3.156823.67697K562YBX3
chr143490427534904437-3'-UTR,CDS,intron-Distal3.3222719.33321HepG2GRWD1
chr143490394534904066-3'-UTR,intron-Distal3.692894.93097K562YBX3
chr143490384134903956-3'-UTR,intron-Distal4.121378.04798K562UPF1
chr143490337934903433-3'-UTR,intron-Distal6.491567.88033K562PUM2
chr143490413334904157-3'-UTR,intron-Distal3.571608.68171HepG2FUBP3
chr143490406034904211-3'-UTR,intron-Distal3.2599711.80560HepG2DDX55
chr143490402634904051-3'-UTR,intron-Distal3.956093.11728K562FAM120A
chr143490415734904220-3'-UTR,intron-Distal3.584846.77513HepG2FUBP3
chr143493136834931430-5'-UTR,CDS,intron-Distal3.2512918.67117HepG2DDX3X
chr143493135134931433-5'-UTR,CDS,intron-Distal3.767033.02060K562LIN28B
chr143493136034931445-5'-UTR,CDS,intron-Distal3.1242410.71736HepG2SRSF1
chr143493135034931433-5'-UTR,CDS,intron-Distal4.301734.29344K562SRSF1
chr143493136834931443-5'-UTR,CDS,intron-Distal3.229538.94758HepG2RPS3
chr143493123734931315-CDS,intron-Distal3.107346.06223HepG2PRPF4
chr143493125134931320-CDS,intron-Distal5.168655.90029HepG2EXOSC5
chr143493127434931340-CDS,intron-Distal3.340985.18980HepG2SRSF9
chr143490442834904480-CDS,intron-Distal3.664073.19539K562YBX3
chr143490447034904512-CDS,intron-Distal4.632857.91835HepG2RPS3
chr143490445134904522-CDS,intron-Distal4.378834.59919HepG2AQR
chr143491030834910329-intron-Distal3.0668612.60520HepG2HNRNPC
chr143490813534908222-intron-Distal3.185523.88644HepG2HNRNPU
chr143491271334912781-intron-Distal3.2537715.39143HepG2HNRNPL
chr143491322634913306-intron-Distal3.2819310.18319HepG2QKI
chr143491208934912224-intron-Distal4.5264023.48441K562HNRNPL
chr143491423634914298-intron-Distal4.860636.00679K562AGGF1
chr143491234934912410-intron-Distal3.258855.58293K562HNRNPL
chr143493072734930755-intron-Distal4.167037.17878HepG2HNRNPM
chr143493103334931159-intron-Distal3.4061018.48149HepG2GTF2F1
chr143491420534914246-intron-Distal3.712567.61971HepG2AGGF1
chr143491235234912409-intron-Distal3.879488.99957HepG2AGGF1
chr143493104734931123-intron-Distal3.057206.23201HepG2BCCIP
chr143491210134912124-intron-Distal4.3272210.22271HepG2HNRNPL
chr143493090834931010-intron-Distal3.542513.84001K562HNRNPM
chr143491227034912296-intron-Distal4.388924.07272K562AGGF1
chr143491315734913226-intron-Distal4.257806.77804HepG2QKI
chr143491642134916434-intron-Distal3.170457.31686HepG2HNRNPC
chr143491217634912201-intron-Distal4.9420212.33615K562AGGF1
chr143493105534931095-intron-Distal5.3984211.04675HepG2PRPF4
chr143493129534931301-intron-Distal5.6307411.04988HepG2AQR
chr143492364234923687-intron-Distal4.489434.57471HepG2SFPQ
chr143490550234905547-intron-Distal3.270423.39857HepG2HNRNPM
chr143491226334912292-intron-Distal3.420085.66406HepG2AGGF1
chr143493096534931031-intron-Distal3.113963.23164HepG2PRPF4
chr143493097834931014-intron-Distal3.6766610.52765HepG2HNRNPM
chr143493105634931161-intron-Distal4.016225.81715HepG2EXOSC5
chr143493118434931296-intron-Distal3.2219911.61379HepG2HNRNPM
chr143492026234920306-intron-Distal3.585673.16095HepG2U2AF2
chr143493059434930677-intron-Distal5.8694445.49078HepG2HNRNPM
chr143491233934912408-intron-Distal4.2653334.27062HepG2HNRNPL
chr143493120334931285-intron-Distal3.591106.13617HepG2GTF2F1
chr143493103634931090-intron-Distal3.541674.32964K562HNRNPM
chr143493093034930964-intron-Distal3.058416.87821HepG2HNRNPM
chr143490486234904915-intron-Distal4.263923.22788K562XRCC6
chr143493067734930723-intron-Distal4.1230519.12197HepG2HNRNPM
chr143490485434904886-intron-Distal5.447369.17022HepG2XRCC6
chr143493109534931113-intron-Distal4.376599.28502HepG2PRPF4
chr143493116834931232-intron-Distal4.301164.27460K562HNRNPM
chr143492696734927018-intron-Distal3.295355.95302HepG2HNRNPC
chr143492860734928669-intron-Distal3.9458710.47540HepG2HNRNPC
chr143493111334931178-intron-Distal4.5727011.90236HepG2PRPF4
chr143493016234930208-intron-Distal3.826447.24726HepG2HNRNPM
chr143491462534914684-intron-Distal3.974209.12433HepG2AGGF1
chr143491254034912576-intron-Distal3.435364.45974HepG2GTF2F1
chr143491232334912352-intron-Distal3.898686.85981HepG2AGGF1
chr143493064134930718-intron-Distal3.401614.32378K562HNRNPM
chr143491213934912196-intron-Distal4.0056741.22275HepG2HNRNPL
chr143491219834912205-intron-Distal4.3990530.47343HepG2HNRNPL
chr143491232334912363-intron-Distal4.331413.85108HepG2GTF2F1
chr143493103234931160-intron-Distal4.403633.77360K562GTF2F1
chr143491214034912243-intron-Distal3.567424.40053K562GTF2F1
chr143493102134931144-intron-Distal4.4991825.23368HepG2HNRNPM
chr143491255234912583-intron-Distal4.9310514.51791HepG2HNRNPL
chr143491220534912247-intron-Distal4.6532338.80713HepG2HNRNPL
chr143492711534927181-intron-Distal4.680056.91039HepG2HNRNPC
chr143491236034912407-intron-Distal4.426467.56199K562AGGF1
chr143493126034931295-intron-Distal5.9559214.68312HepG2AQR
chr143491209934912188-intron-Distal3.8498810.45480HepG2GTF2F1
chr143493054034930594-intron-Distal4.8005910.47564HepG2HNRNPM
chr143490488634904915-intron-Distal5.467699.17022HepG2XRCC6
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SPTSSA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SPTSSA is not available on ENCORE database.

  • 105 RBPs can affect the levels of SPTSSA.  








The Knockdown/knockout RNA-Seq assay for SPTSSA is not available on ENCORE database.





105 RBPs can affect the gene expression of SPTSSA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SPTSSAENSG00000165389.62682.541302165.618700.308702.670401.61500HepG2AATF
SPTSSAENSG00000165389.61339.916302808.38410-1.0676014.3858012.82290HepG2AKAP8L
SPTSSAENSG00000165389.65821.733004781.525400.283902.097101.40930HepG2ASCC1
SPTSSAENSG00000165389.61681.943903088.09090-0.8766010.648808.74960HepG2BCCIP
SPTSSAENSG00000165389.63260.101702683.543300.280702.194301.39260HepG2BCLAF1
SPTSSAENSG00000165389.61597.534702537.75300-0.667709.911708.86860HepG2BOP1
SPTSSAENSG00000165389.63543.559002832.176200.323203.765702.33450HepG2BUD13
SPTSSAENSG00000165389.65319.784003624.465100.553508.686007.42810HepG2CALR
SPTSSAENSG00000165389.62712.853804954.23930-0.868908.004206.33300HepG2CCAR1
SPTSSAENSG00000165389.66410.267004542.766300.496705.759604.67020HepG2CIRBP
SPTSSAENSG00000165389.61738.197802921.54890-0.749103.259202.42350HepG2CNOT7
SPTSSAENSG00000165389.63703.418303113.177500.250402.629701.55120HepG2CPSF7
SPTSSAENSG00000165389.63315.389901907.826800.7971014.7581012.61550HepG2CSTF2
SPTSSAENSG00000165389.63821.051804453.91400-0.221103.033802.36610HepG2CELF1
SPTSSAENSG00000165389.63930.034904789.66140-0.285406.686805.60770HepG2DAZAP1
SPTSSAENSG00000165389.62683.176003159.31460-0.235702.664501.52940HepG2DDX1
SPTSSAENSG00000165389.61385.446902390.00120-0.7867013.9307012.55000HepG2DDX21
SPTSSAENSG00000165389.61674.473102841.10500-0.762704.692903.07280HepG2DDX27
SPTSSAENSG00000165389.63385.622505535.75220-0.709409.813708.69910HepG2DDX3X
SPTSSAENSG00000165389.61600.500703036.11300-0.9237011.9615010.48920HepG2DDX55
SPTSSAENSG00000165389.62316.640203097.91530-0.419307.348406.24570HepG2DNAJC21
SPTSSAENSG00000165389.62289.941403070.42980-0.4231011.3556010.13420HepG2DNAJC2
SPTSSAENSG00000165389.62320.907702878.80710-0.310802.297901.45580HepG2EEF2
SPTSSAENSG00000165389.62991.310004571.41580-0.611907.508406.56820HepG2EIF2S1
SPTSSAENSG00000165389.61949.188004526.12090-1.2154025.2065022.98570HepG2EIF4G2
SPTSSAENSG00000165389.64248.093404807.04770-0.178302.066901.53160HepG2ETF1
SPTSSAENSG00000165389.63557.640702527.259300.493205.411103.67980HepG2FKBP4
SPTSSAENSG00000165389.61782.340502425.02770-0.444205.247904.17570HepG2FUBP3
SPTSSAENSG00000165389.63168.418305097.02520-0.685909.597008.37820HepG2FXR1
SPTSSAENSG00000165389.63434.765204728.38220-0.461104.178103.36940HepG2G3BP1
SPTSSAENSG00000165389.63350.781605019.59580-0.583107.310405.85190HepG2G3BP2
SPTSSAENSG00000165389.62740.275602080.843700.397103.195602.22420HepG2GEMIN5
SPTSSAENSG00000165389.65392.462404401.541600.292804.745603.57300HepG2HNRNPA2B1
SPTSSAENSG00000165389.62282.843503478.82550-0.607809.397208.18170HepG2HNRNPC
SPTSSAENSG00000165389.63867.473904787.57930-0.307902.706702.01570HepG2HNRNPK
SPTSSAENSG00000165389.62072.732302633.57180-0.345502.807501.84970HepG2HNRNPM
SPTSSAENSG00000165389.63075.870903530.02210-0.198703.134702.35850HepG2ILF2
SPTSSAENSG00000165389.61623.667302781.29790-0.776503.906402.44500HepG2KHDRBS1
SPTSSAENSG00000165389.63540.360605098.80340-0.526305.658804.73210HepG2MAGOH
SPTSSAENSG00000165389.62103.114405248.20020-1.3193029.0553027.16740HepG2NCBP2
SPTSSAENSG00000165389.63886.064304749.38580-0.289402.131601.46040HepG2NOL12
SPTSSAENSG00000165389.61768.154302787.32810-0.656603.302102.09870HepG2NONO
SPTSSAENSG00000165389.63352.763804674.03080-0.479304.767903.83180HepG2PABPC4
SPTSSAENSG00000165389.62605.998203082.33070-0.242202.250601.57900HepG2PPIL4
SPTSSAENSG00000165389.62643.737504373.59190-0.7262024.7979023.47060HepG2PTBP1
SPTSSAENSG00000165389.64150.524004812.34900-0.213403.347302.70820HepG2PUM1
SPTSSAENSG00000165389.62847.533404808.95720-0.7560012.4217011.06170HepG2PUM2
SPTSSAENSG00000165389.62085.880102846.78540-0.448704.310203.57240HepG2PUS1
SPTSSAENSG00000165389.63169.713004736.32050-0.5794012.4088011.22470HepG2QKI
SPTSSAENSG00000165389.64732.253603102.834700.608803.673802.86460HepG2RAVER1
SPTSSAENSG00000165389.64842.273404017.847600.269203.848203.26370HepG2RBM22
SPTSSAENSG00000165389.64024.446704867.23680-0.274304.358203.70710HepG2NELFE
SPTSSAENSG00000165389.63546.927104533.44360-0.354007.054506.13690HepG2RECQL
SPTSSAENSG00000165389.63982.837302839.079900.488306.866605.86080HepG2RPLP0
SPTSSAENSG00000165389.62240.736503047.40910-0.443602.535301.62810HepG2RPS10
SPTSSAENSG00000165389.63133.614402273.963800.462506.316205.42860HepG2RPS19
SPTSSAENSG00000165389.62134.460703469.22180-0.700703.401902.20760HepG2RPS5
SPTSSAENSG00000165389.61215.877502282.38210-0.9085014.9772012.90410HepG2SERBP1
SPTSSAENSG00000165389.64921.960903345.148600.557103.279902.54390HepG2SF3A3
SPTSSAENSG00000165389.63096.272504553.14770-0.5563016.1255014.87800HepG2SF3B4
SPTSSAENSG00000165389.63395.546004346.54570-0.356209.575008.39400HepG2SLBP
SPTSSAENSG00000165389.62814.928603589.03720-0.350509.120108.06010HepG2SMN1
SPTSSAENSG00000165389.62046.644103162.18700-0.627705.257503.91140HepG2SMNDC1
SPTSSAENSG00000165389.64861.158502775.849100.808307.433006.14530HepG2SNRNP70
SPTSSAENSG00000165389.63799.226904475.96740-0.236503.856703.13930HepG2SRSF5
SPTSSAENSG00000165389.65104.013903940.276900.373209.060508.23670HepG2SSB
SPTSSAENSG00000165389.61795.563002549.80160-0.505902.725301.49410HepG2STAU1
SPTSSAENSG00000165389.64526.219402899.595600.642405.070403.43900HepG2SUB1
SPTSSAENSG00000165389.63369.484205090.61180-0.5953016.2867014.97980HepG2SUCLG1
SPTSSAENSG00000165389.62006.515102577.65840-0.361402.723901.78920HepG2SUPT6H
SPTSSAENSG00000165389.63546.678204272.22150-0.268503.371602.76200HepG2TAF15
SPTSSAENSG00000165389.61875.288202456.48820-0.389503.665502.84640HepG2TARDBP
SPTSSAENSG00000165389.63019.184003925.19780-0.378604.744903.65970HepG2TIA1
SPTSSAENSG00000165389.65196.337903358.145100.6297014.4129013.42940HepG2TIAL1
SPTSSAENSG00000165389.63605.359104428.74740-0.296802.925802.02460HepG2TUFM
SPTSSAENSG00000165389.63324.653904687.54630-0.495605.053703.90180HepG2UBE2L3
SPTSSAENSG00000165389.61058.128001785.67160-0.755006.991305.77430HepG2UCHL5
SPTSSAENSG00000165389.63344.753402966.623500.173002.129901.50380HepG2UPF1
SPTSSAENSG00000165389.62492.268502864.17660-0.200702.000101.47340HepG2UTP3
SPTSSAENSG00000165389.61811.229602975.40820-0.716108.774207.50030HepG2XRN2
SPTSSAENSG00000165389.63786.622103262.734700.214703.340702.75620HepG2ZNF622
SPTSSAENSG00000165389.6903.996501444.88800-0.676606.056105.24560K562AQR
SPTSSAENSG00000165389.6741.888601027.49660-0.469903.759902.74130K562BOP1
SPTSSAENSG00000165389.6874.040401092.51700-0.321902.544901.79160K562CPSF6
SPTSSAENSG00000165389.6574.84120752.55240-0.388603.033901.64250K562DDX27
SPTSSAENSG00000165389.6869.116101419.67450-0.7079015.0985013.69200K562DDX47
SPTSSAENSG00000165389.61169.60380888.737500.396104.673503.48810K562DKC1
SPTSSAENSG00000165389.6550.88580695.65720-0.336602.853101.62350K562EIF2S1
SPTSSAENSG00000165389.6615.74550955.22500-0.633503.444802.65600K562EIF2S2
SPTSSAENSG00000165389.6513.35910758.92710-0.564002.739001.94640K562EIF3G
SPTSSAENSG00000165389.6465.34580661.69820-0.507904.102403.10560K562EIF4A3
SPTSSAENSG00000165389.61088.825801563.81410-0.522305.949704.58950K562EIF4G2
SPTSSAENSG00000165389.6822.198401043.07960-0.343302.525501.76430K562GPKOW
SPTSSAENSG00000165389.6647.42760858.29560-0.406802.921001.81660K562HNRNPA1
SPTSSAENSG00000165389.6598.12950862.80440-0.528602.615202.03230K562HNRNPC
SPTSSAENSG00000165389.6821.419001091.56200-0.410202.479301.68030K562MAGOH
SPTSSAENSG00000165389.61211.18970981.909800.302702.495001.63970K562MBNL1
SPTSSAENSG00000165389.6791.655301018.16430-0.363002.814501.92960K562METAP2
SPTSSAENSG00000165389.6726.00810942.17960-0.376004.084203.11800K562MTPAP
SPTSSAENSG00000165389.6933.70480688.248800.439902.467901.64620K562NAA15
SPTSSAENSG00000165389.6790.749901046.87250-0.404805.716204.69830K562NSUN2
SPTSSAENSG00000165389.6699.05490971.33370-0.474602.342801.44720K562PCBP2
SPTSSAENSG00000165389.6706.083701060.47430-0.586804.224103.41960K562PTBP1
SPTSSAENSG00000165389.61305.882801706.28100-0.385802.789501.97040K562PUF60
SPTSSAENSG00000165389.62394.233901814.601000.399804.355602.99040K562PUM1
SPTSSAENSG00000165389.6606.05060819.07040-0.434503.216702.63890K562PUS1
SPTSSAENSG00000165389.6962.13550798.082300.269602.102001.57170K562RBM15
SPTSSAENSG00000165389.6918.346801207.04520-0.394402.997801.32460K562RBM17
SPTSSAENSG00000165389.6712.330601017.20870-0.514002.984602.10860K562RBM22
SPTSSAENSG00000165389.6522.63030897.57590-0.780203.398701.65360K562RBM39
SPTSSAENSG00000165389.6287.63310438.92440-0.609704.136002.81280K562SRSF4
SPTSSAENSG00000165389.6666.36490981.60190-0.558802.887101.81190K562SRSF5
SPTSSAENSG00000165389.6663.000401052.24150-0.666403.844703.00440K562TARDBP
SPTSSAENSG00000165389.6662.949001014.96620-0.614503.415302.49170K562TIA1
SPTSSAENSG00000165389.6698.88840995.62670-0.510503.767902.46220K562TRA2A
SPTSSAENSG00000165389.6992.879701355.93620-0.449603.720402.04730K562TRIP6
SPTSSAENSG00000165389.6361.98550630.71030-0.801007.379805.64130K562UCHL5
SPTSSAENSG00000165389.6951.794301110.01910-0.221901.999001.38170K562UPF1
SPTSSAENSG00000165389.6683.18870949.81170-0.475404.623403.47640K562WDR3
SPTSSAENSG00000165389.6746.04920987.67050-0.404805.236104.10570K562WDR43
SPTSSAENSG00000165389.6483.03030642.19170-0.410902.421601.31540K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SPTSSA is not available on ENCORE database.






No RBPs affect the alternative splcing events of SPTSSA on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SPTSSA is not avaliable on ENCORE database.