SOX6

General Information

Gene Name       : SOX6
Gene ID             : ENSG00000110693.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SOX6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SOX6ENSG00000110693.170.080.000.04ENCSR000AEF
HepG2SOX6ENSG00000110693.171.071.131.10ENCSR985KAT
K562SOX6ENSG00000110693.174.005.264.63ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SOX6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SOX6 RNA is bound by 2 proteins.  







eCLIP assay for SOX6 is not avaliable on ENCORE database.





2 proteins are bound to SOX6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr111614610516146206-intron-Distal4.743305.05386K562PTBP1
chr111647492616474955-intron-Distal4.064763.30696K562EXOSC5
chr111618451016184575-intron-Distal3.450823.62418K562PTBP1
chr111646774216467828-intron-Distal4.519578.33693K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SOX6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SOX6 is not available on ENCORE database.

  • 113 RBPs can affect the levels of SOX6.  








The Knockdown/knockout RNA-Seq assay for SOX6 is not available on ENCORE database.





113 RBPs can affect the gene expression of SOX6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SOX6ENSG00000110693.11659.32730380.648300.7924011.297109.88160HepG2AKAP8L
SOX6ENSG00000110693.11319.19540653.81510-1.0344016.5102015.08530HepG2AUH
SOX6ENSG00000110693.11120.54920203.64420-0.756402.978101.96540HepG2CCAR1
SOX6ENSG00000110693.11173.98370100.886900.786103.093202.27720HepG2CIRBP
SOX6ENSG00000110693.1171.53940137.18130-0.939304.202302.94630HepG2YBX3
SOX6ENSG00000110693.11206.86610129.050500.680702.602201.30550HepG2CSTF2T
SOX6ENSG00000110693.11126.68360174.87690-0.465101.862401.31570HepG2CELF1
SOX6ENSG00000110693.1174.50490139.07500-0.900503.578702.81550HepG2DDX21
SOX6ENSG00000110693.1168.92180120.26430-0.803202.328501.61280HepG2DDX55
SOX6ENSG00000110693.1179.79110129.92670-0.703402.421001.50400HepG2DHX30
SOX6ENSG00000110693.11264.95360362.42610-0.451902.181301.56900HepG2DKC1
SOX6ENSG00000110693.1134.39890134.71300-1.9695011.9977010.61540HepG2DNAJC21
SOX6ENSG00000110693.11323.91330109.240701.5680011.251209.90820HepG2EIF4B
SOX6ENSG00000110693.1188.55640185.51430-1.066906.681605.48350HepG2EIF4G1
SOX6ENSG00000110693.1166.18780177.71790-1.425008.628907.22030HepG2EIF4G2
SOX6ENSG00000110693.11203.30430377.29050-0.892003.132802.05020HepG2FTO
SOX6ENSG00000110693.11181.49110113.215700.680702.495601.83770HepG2FXR1
SOX6ENSG00000110693.11187.0278090.797901.042405.138203.91360HepG2GEMIN5
SOX6ENSG00000110693.1189.86010149.75020-0.736802.532901.56460HepG2GNB2L1
SOX6ENSG00000110693.11313.35380118.387001.4042010.073707.96310HepG2GRSF1
SOX6ENSG00000110693.11242.46500171.341200.500802.448901.81050HepG2HNRNPL
SOX6ENSG00000110693.11729.32870407.456700.839808.383307.35260HepG2HNRNPLL
SOX6ENSG00000110693.1185.98730150.27350-0.805403.808303.10730HepG2HNRNPU
SOX6ENSG00000110693.11304.10770389.81370-0.358202.107201.46860HepG2IGF2BP1
SOX6ENSG00000110693.1152.35990106.72890-1.027403.266002.53830HepG2IGF2BP2
SOX6ENSG00000110693.11381.09880100.187501.927409.649607.90550HepG2IGF2BP3
SOX6ENSG00000110693.1161.95520124.67870-1.008903.466901.96100HepG2ILF3
SOX6ENSG00000110693.1167.00870121.77190-0.861802.968601.72740HepG2KHDRBS1
SOX6ENSG00000110693.1157.62990107.36360-0.897602.407001.48260HepG2KHSRP
SOX6ENSG00000110693.11245.87750346.32090-0.494203.100102.02220HepG2KIF1C
SOX6ENSG00000110693.11263.96900456.17180-0.789202.980601.68570HepG2KRR1
SOX6ENSG00000110693.11228.37640113.883401.003804.986004.16050HepG2MATR3
SOX6ENSG00000110693.11181.12220382.08960-1.076902.825502.00850HepG2MSI2
SOX6ENSG00000110693.11326.39780116.561301.4854012.5426011.24720HepG2NCBP2
SOX6ENSG00000110693.11124.85860186.49830-0.578902.677701.92710HepG2NOL12
SOX6ENSG00000110693.1127.36560116.87570-2.094509.208007.54350HepG2PABPC1
SOX6ENSG00000110693.11311.42680148.751801.0659010.072408.62550HepG2PARN
SOX6ENSG00000110693.11340.28530114.121401.5761011.5049010.40450HepG2PCBP1
SOX6ENSG00000110693.11202.2006092.755701.124205.513204.41540HepG2PRPF8
SOX6ENSG00000110693.11362.47360116.123401.6421021.0378019.79960HepG2PTBP1
SOX6ENSG00000110693.1186.14470188.82860-1.132206.835805.79840HepG2PUM2
SOX6ENSG00000110693.11609.47290385.839000.659508.315507.34680HepG2PUS1
SOX6ENSG00000110693.11208.86640125.763300.731803.512902.82050HepG2QKI
SOX6ENSG00000110693.11420.90310627.42870-0.576005.959005.27070HepG2RBM22
SOX6ENSG00000110693.11304.26360114.138701.4144013.3028011.89050HepG2RBM25
SOX6ENSG00000110693.1156.26300123.50400-1.134303.900502.08500HepG2RBM47
SOX6ENSG00000110693.11187.38120129.233700.535902.040901.56110HepG2NELFE
SOX6ENSG00000110693.11274.35130120.364501.188509.964308.90690HepG2RECQL
SOX6ENSG00000110693.11226.52860426.51210-0.912908.525807.42690HepG2RPLP0
SOX6ENSG00000110693.11245.05770166.527900.557302.425601.42300HepG2RPS5
SOX6ENSG00000110693.11153.7225091.752700.744402.298201.57480HepG2RRP9
SOX6ENSG00000110693.1152.70530133.82840-1.344407.121006.15610HepG2SAFB2
SOX6ENSG00000110693.11274.94810120.898401.185309.717408.70880HepG2SF3B4
SOX6ENSG00000110693.11487.58240708.65190-0.539406.304805.63240HepG2SRFBP1
SOX6ENSG00000110693.11202.71710114.539300.823503.150201.41460HepG2SRP68
SOX6ENSG00000110693.11249.91470126.192200.985706.646905.99080HepG2SRSF1
SOX6ENSG00000110693.11310.04490615.26740-0.9887015.8752014.85410HepG2SSB
SOX6ENSG00000110693.11115.16480315.36190-1.453303.880902.43720HepG2STAU1
SOX6ENSG00000110693.11243.16290460.56660-0.921504.221402.57640HepG2SUGP2
SOX6ENSG00000110693.11160.33540318.79410-0.991502.347901.47650HepG2SUPT6H
SOX6ENSG00000110693.1155.26750146.03910-1.401807.740306.98130HepG2TIAL1
SOX6ENSG00000110693.11316.87260159.922900.986405.488503.45990HepG2TRA2A
SOX6ENSG00000110693.1186.48090147.32270-0.768503.584702.96080HepG2TRIM56
SOX6ENSG00000110693.11616.49320403.701500.610702.643302.02820HepG2U2AF1
SOX6ENSG00000110693.11211.05780413.21880-0.9693011.3667010.12650HepG2UPF1
SOX6ENSG00000110693.1137.05280109.60890-1.564705.428703.99370HepG2UPF2
SOX6ENSG00000110693.11605.82290424.732400.512204.844503.49780HepG2UTP18
SOX6ENSG00000110693.11240.44350398.94680-0.730506.546305.69090HepG2UTP3
SOX6ENSG00000110693.11273.02420156.617400.801703.326701.92710HepG2XRCC5
SOX6ENSG00000110693.11226.39240413.32100-0.868408.327807.26780HepG2ZC3H8
SOX6ENSG00000110693.11272.48060159.123300.775903.966702.38510HepG2ZRANB2
SOX6ENSG00000110693.11231.04960136.473400.759503.774702.37290K562AARS
SOX6ENSG00000110693.11239.91260444.04740-0.888209.514808.54340K562AGGF1
SOX6ENSG00000110693.11319.44970487.89160-0.611004.899403.50430K562AKAP8
SOX6ENSG00000110693.11682.38300348.382700.9698012.268209.69660K562APOBEC3C
SOX6ENSG00000110693.11203.47040370.83290-0.866003.891003.21870K562AQR
SOX6ENSG00000110693.11430.06990243.773200.818906.901504.94260K562CIRBP
SOX6ENSG00000110693.11130.88140294.67970-1.170907.509905.04040K562CKAP4
SOX6ENSG00000110693.11240.99490364.05470-0.595203.088801.91500K562CPEB4
SOX6ENSG00000110693.11325.33010520.98820-0.679304.199702.37330K562DDX19B
SOX6ENSG00000110693.11645.94620376.817600.7774010.607909.42570K562DDX47
SOX6ENSG00000110693.11273.33850497.26360-0.8633010.274808.37280K562DKC1
SOX6ENSG00000110693.1171.69130146.01780-1.026303.607301.58230K562DNAJC2
SOX6ENSG00000110693.11464.93270166.219201.4838014.3024011.68280K562EEF2
SOX6ENSG00000110693.11471.78550286.245400.720807.223406.14200K562EIF2S2
SOX6ENSG00000110693.11299.52080130.301701.200706.370004.79180K562EIF3A
SOX6ENSG00000110693.11587.28780171.873801.7726022.6624019.68210K562EIF3D
SOX6ENSG00000110693.11226.40920149.416500.599502.825001.99560K562EIF4A3
SOX6ENSG00000110693.11144.28810226.10190-0.648002.510701.31010K562EXOSC5
SOX6ENSG00000110693.11246.24830155.386500.664203.743203.05530K562FXR1
SOX6ENSG00000110693.11116.38750210.16450-0.852604.386703.39290K562GPKOW
SOX6ENSG00000110693.11203.28920381.47840-0.908107.314006.07130K562GRSF1
SOX6ENSG00000110693.11241.35660149.367200.692203.454902.79810K562HNRNPC
SOX6ENSG00000110693.11324.13860227.197900.512602.520201.34660K562HNRNPK
SOX6ENSG00000110693.11207.79200340.51050-0.712605.012803.54670K562HNRNPL
SOX6ENSG00000110693.11160.87290233.57370-0.538002.622501.75240K562HNRNPU
SOX6ENSG00000110693.11376.40160490.38180-0.381602.518301.73450K562KIF1C
SOX6ENSG00000110693.11101.68890179.43420-0.819302.890801.93270K562KRR1
SOX6ENSG00000110693.11383.01920549.34550-0.520304.307903.12750K562MBNL1
SOX6ENSG00000110693.11135.29390205.14080-0.600502.413301.59880K562METAP2
SOX6ENSG00000110693.11270.44870385.04770-0.509702.240501.46720K562NAA15
SOX6ENSG00000110693.11301.35810431.79970-0.518902.817201.31750K562NOL12
SOX6ENSG00000110693.11177.39050262.99410-0.568103.367402.55160K562NSUN2
SOX6ENSG00000110693.11294.91910220.615600.418702.014101.32990K562POLR2G
SOX6ENSG00000110693.11154.49580357.82370-1.211703.135202.25440K562PPIG
SOX6ENSG00000110693.1164.36510133.91870-1.057002.685601.79750K562PSIP1
SOX6ENSG00000110693.11467.19270232.231401.0084011.8134010.49690K562PTBP1
SOX6ENSG00000110693.11624.83630430.772900.536503.352102.45500K562PUF60
SOX6ENSG00000110693.11336.75300458.08300-0.443902.281101.32030K562PUM1
SOX6ENSG00000110693.11270.01000446.47530-0.725606.588305.69880K562RBM15
SOX6ENSG00000110693.11338.60880217.086400.641202.972501.51750K562RBM34
SOX6ENSG00000110693.11223.89440122.161100.873904.876503.55910K562RCC2
SOX6ENSG00000110693.11371.51140234.391100.664404.406902.99160K562NELFE
SOX6ENSG00000110693.11735.70630379.881200.953504.616001.85170K562DROSHA
SOX6ENSG00000110693.11243.06390159.128100.611002.403801.64470K562RPS19
SOX6ENSG00000110693.11264.46920143.437200.882604.347903.05690K562RPS3
SOX6ENSG00000110693.11315.44490196.527000.682604.169102.83000K562SAFB
SOX6ENSG00000110693.11355.51990203.206900.806905.696903.62690K562SDAD1
SOX6ENSG00000110693.11391.51090265.886800.558104.275703.13900K562SRPK2
SOX6ENSG00000110693.11153.87400227.65070-0.565102.519901.84030K562SRSF1
SOX6ENSG00000110693.11255.90140375.86160-0.554603.194701.58820K562SUCLG1
SOX6ENSG00000110693.11283.35880162.645300.800804.875702.72250K562TBRG4
SOX6ENSG00000110693.11228.78350156.202500.550502.705001.91050K562U2AF2
SOX6ENSG00000110693.11438.26310278.858900.652205.887004.88320K562UPF1
SOX6ENSG00000110693.11184.36570315.99880-0.777304.787503.20610K562UTP3
SOX6ENSG00000110693.11451.52440248.134400.8636010.518808.99450K562WDR43
SOX6ENSG00000110693.11380.97750213.502500.835403.865101.91860K562XRCC6
SOX6ENSG00000110693.11276.72650417.84400-0.594502.087801.34910K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SOX6 is not available on ENCORE database.





2 RBPs can affect the splicing of SOX6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESOX6ENSG00000110693.11chr11-1611754116117664160772971607744716119154161192340.447000.001570.02996includedHepG2U2AF1
SESOX6ENSG00000110693.11chr11-161175411611766416077297160774471611915416119234-0.306000.007260.08242excludedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SOX6 is not avaliable on ENCORE database.