SMAD9

General Information

Gene Name       : SMAD9
Gene ID             : ENSG00000120693.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMAD9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMAD9ENSG00000120693.130.000.000.00ENCSR000AEF
HepG2SMAD9ENSG00000120693.135.005.555.28ENCSR985KAT
K562SMAD9ENSG00000120693.130.000.020.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMAD9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMAD9 RNA is bound by 8 proteins.  







eCLIP assay for SMAD9 is not avaliable on ENCORE database.





8 proteins are bound to SMAD9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr133742751737427585-CDS,intron-Distal,intron-Proximal5.587389.40852HepG2PRPF8
chr133749390937493962-intron-Distal5.124218.71133HepG2FAM120A
chr133749388137493965-intron-Distal4.014857.70912HepG2PRPF4
chr133745639737456439-intron-Distal3.843254.51897HepG2HNRNPL
chr133749411937494195-intron-Distal4.329604.70962HepG2GTF2F1
chr133749374937493818-intron-Distal3.619584.33898HepG2FAM120A
chr133749404437494117-intron-Distal4.618925.72853HepG2HNRNPM
chr133749374337493832-intron-Distal3.616315.32871HepG2CSTF2T
chr133749389237493963-intron-Distal3.872705.85439HepG2CSTF2T
chr133749344637493528-intron-Distal4.7020410.12287HepG2HNRNPM
chr133749352837493587-intron-Distal3.314363.04298HepG2HNRNPM
chr133749325937493299-intron-Distal4.397455.02084HepG2HNRNPM
chr133749388837493959-intron-Distal4.331414.97583HepG2GTF2F1
chr133749130537491390-intron-Distal3.249843.38316HepG2SFPQ
chr133749412837494192-intron-Distal4.280925.11005HepG2PRPF4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMAD9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMAD9 is not available on ENCORE database.

  • 118 RBPs can affect the levels of SMAD9.  








The Knockdown/knockout RNA-Seq assay for SMAD9 is not available on ENCORE database.





118 RBPs can affect the gene expression of SMAD9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMAD9ENSG00000120693.9258.55000555.40310-1.103109.654408.06060HepG2ABCF1
SMAD9ENSG00000120693.9395.53550679.10900-0.779805.940205.19500HepG2AKAP1
SMAD9ENSG00000120693.9307.89570446.42560-0.536002.606801.59760HepG2AKAP8
SMAD9ENSG00000120693.9363.51170490.59130-0.432503.149202.33710HepG2AKAP8L
SMAD9ENSG00000120693.9385.53870561.89050-0.543403.494202.61220HepG2ASCC1
SMAD9ENSG00000120693.9474.07790675.03690-0.509805.359304.45700HepG2AUH
SMAD9ENSG00000120693.9165.40900382.33540-1.208808.937707.20820HepG2BCCIP
SMAD9ENSG00000120693.963.43900407.76830-2.6843039.2607037.48720HepG2BOP1
SMAD9ENSG00000120693.9290.92010508.04930-0.804307.798106.59520HepG2CALR
SMAD9ENSG00000120693.9430.42960820.86100-0.931408.302006.60640HepG2CCAR1
SMAD9ENSG00000120693.9285.08010533.83960-0.905008.002106.73870HepG2CIRBP
SMAD9ENSG00000120693.9329.27720488.17120-0.568104.872204.03690HepG2CKAP4
SMAD9ENSG00000120693.9356.25600579.24370-0.701303.771502.87260HepG2CNOT7
SMAD9ENSG00000120693.9122.78160374.35630-1.6083016.3001014.79830HepG2CPSF6
SMAD9ENSG00000120693.9618.84520457.398600.436003.047801.89000HepG2CPSF7
SMAD9ENSG00000120693.9325.12910465.01730-0.516303.990602.76400HepG2YBX3
SMAD9ENSG00000120693.9579.30640701.97120-0.277102.482101.77480HepG2DAZAP1
SMAD9ENSG00000120693.9315.63740465.65820-0.561004.413502.97300HepG2DDX1
SMAD9ENSG00000120693.9117.87400500.95170-2.0874034.4454032.45860HepG2DDX21
SMAD9ENSG00000120693.9323.23500490.32340-0.601204.661203.46480HepG2DDX24
SMAD9ENSG00000120693.9215.21750351.74550-0.708703.155901.78510HepG2DDX27
SMAD9ENSG00000120693.9315.89800650.50260-1.0421010.885809.72100HepG2DDX3X
SMAD9ENSG00000120693.9220.70160375.90670-0.768304.193203.26330HepG2DDX55
SMAD9ENSG00000120693.9232.49890505.47620-1.1204011.9937010.06860HepG2DDX5
SMAD9ENSG00000120693.91035.13340558.871600.889109.006907.95870HepG2DDX6
SMAD9ENSG00000120693.9262.34090467.22910-0.832708.136907.09370HepG2DKC1
SMAD9ENSG00000120693.9223.04990456.60090-1.0336012.6388011.22790HepG2DNAJC21
SMAD9ENSG00000120693.9326.33330452.58530-0.471804.145703.37870HepG2DNAJC2
SMAD9ENSG00000120693.9323.02970509.16640-0.656504.393603.25790HepG2EEF2
SMAD9ENSG00000120693.9380.34780537.18100-0.498102.899902.29310HepG2EIF2S1
SMAD9ENSG00000120693.9309.46650473.13710-0.612504.863203.47750HepG2EIF3G
SMAD9ENSG00000120693.9186.91330593.61140-1.6671021.6079019.86290HepG2EIF4A3
SMAD9ENSG00000120693.9420.43170692.43750-0.7198010.034508.63370HepG2EIF4G1
SMAD9ENSG00000120693.9512.18870663.32880-0.373002.390001.63090HepG2EIF4G2
SMAD9ENSG00000120693.9612.35260775.05180-0.339902.938102.32200HepG2ETF1
SMAD9ENSG00000120693.9323.88820477.14450-0.558904.181603.15470HepG2EWSR1
SMAD9ENSG00000120693.9345.27100477.44350-0.467602.973101.79070HepG2FASTKD2
SMAD9ENSG00000120693.9387.80460560.82610-0.532202.963802.16820HepG2FIP1L1
SMAD9ENSG00000120693.9172.16940374.99210-1.123004.510103.22150HepG2FTO
SMAD9ENSG00000120693.9465.43150326.269200.512403.429902.55770HepG2FUBP3
SMAD9ENSG00000120693.9340.26430555.63910-0.707505.267804.36290HepG2G3BP1
SMAD9ENSG00000120693.9230.77910368.03840-0.673304.173903.06120HepG2GEMIN5
SMAD9ENSG00000120693.9258.93030451.65510-0.802705.791504.30380HepG2GNB2L1
SMAD9ENSG00000120693.9151.77520460.97550-1.6028019.9868018.51520HepG2HNRNPA1
SMAD9ENSG00000120693.9182.12460512.75540-1.4933018.8033017.16400HepG2HNRNPC
SMAD9ENSG00000120693.9824.90260639.477300.367203.643802.87750HepG2HNRNPL
SMAD9ENSG00000120693.9260.12090404.98320-0.638703.814003.08520HepG2HNRNPLL
SMAD9ENSG00000120693.9287.94760386.95220-0.426302.268001.40660HepG2HNRNPM
SMAD9ENSG00000120693.9250.68020509.36500-1.0229015.0361013.71360HepG2HNRNPU
SMAD9ENSG00000120693.9212.43420343.24390-0.692204.869703.93520HepG2IGF2BP1
SMAD9ENSG00000120693.9154.07050564.77420-1.8741027.2066025.35000HepG2IGF2BP2
SMAD9ENSG00000120693.9391.56150564.67750-0.528202.635001.35540HepG2ILF3
SMAD9ENSG00000120693.9275.56200485.78320-0.817905.188203.47610HepG2KRR1
SMAD9ENSG00000120693.9443.67650866.76100-0.966109.186807.66810HepG2LARP4
SMAD9ENSG00000120693.9298.73520464.64420-0.637304.131602.65170HepG2LIN28B
SMAD9ENSG00000120693.9244.34960599.24970-1.2942015.0814013.60600HepG2MAGOH
SMAD9ENSG00000120693.9333.68620602.58560-0.852706.827805.86920HepG2MATR3
SMAD9ENSG00000120693.9219.40940453.90590-1.0488010.596909.12200HepG2MSI2
SMAD9ENSG00000120693.9541.91640381.144100.507603.721902.31120HepG2NAA15
SMAD9ENSG00000120693.9419.19070616.76520-0.557103.690902.96360HepG2NCBP2
SMAD9ENSG00000120693.9252.36730460.71810-0.868405.731703.68050HepG2NKRF
SMAD9ENSG00000120693.9379.16040549.20210-0.534503.362602.57190HepG2PABPC4
SMAD9ENSG00000120693.9368.45700504.17730-0.452403.622102.66620HepG2PARN
SMAD9ENSG00000120693.9350.95030504.96500-0.524904.674803.92040HepG2PCBP1
SMAD9ENSG00000120693.9405.44000596.96750-0.558202.248501.31030HepG2PCBP2
SMAD9ENSG00000120693.9278.87800472.14380-0.759605.143302.66320HepG2PPIG
SMAD9ENSG00000120693.9312.57680627.59460-1.005605.657203.96500HepG2PRPF6
SMAD9ENSG00000120693.9256.04240664.42450-1.3757021.8782020.41630HepG2PUF60
SMAD9ENSG00000120693.9505.35910705.27820-0.480906.244805.42870HepG2PUM1
SMAD9ENSG00000120693.9306.20030704.78650-1.2027017.4546015.86210HepG2PUM2
SMAD9ENSG00000120693.9378.66680556.48050-0.555404.653703.87500HepG2QKI
SMAD9ENSG00000120693.9104.32580647.79590-2.6344064.8792063.02890HepG2RBM22
SMAD9ENSG00000120693.9864.69220505.041900.775709.779008.56780HepG2RBM25
SMAD9ENSG00000120693.9292.33880433.17010-0.567302.705301.65890HepG2RCC2
SMAD9ENSG00000120693.9405.99380571.83320-0.494104.171103.53140HepG2NELFE
SMAD9ENSG00000120693.9783.02190532.585000.555906.550905.66010HepG2RECQL
SMAD9ENSG00000120693.9152.03950375.48980-1.3043013.1214011.83280HepG2RPLP0
SMAD9ENSG00000120693.9307.41240565.80360-0.880105.956204.60070HepG2RPS10
SMAD9ENSG00000120693.9196.94730402.18950-1.030109.736108.66960HepG2RPS19
SMAD9ENSG00000120693.9226.58900491.99750-1.1186010.780309.28530HepG2RPS2
SMAD9ENSG00000120693.9276.67230581.53500-1.071709.270407.83860HepG2RPS3A
SMAD9ENSG00000120693.9356.83700502.19020-0.493002.730001.66390HepG2RPS5
SMAD9ENSG00000120693.9325.08180453.60880-0.480603.924103.17920HepG2SAFB2
SMAD9ENSG00000120693.9389.21930547.61960-0.492602.650001.36710HepG2SART3
SMAD9ENSG00000120693.9197.88410403.68560-1.028608.691507.05260HepG2SERBP1
SMAD9ENSG00000120693.9240.25030443.20290-0.883406.121105.09570HepG2SF3A3
SMAD9ENSG00000120693.9307.25590528.97920-0.7838010.538709.41480HepG2SMN1
SMAD9ENSG00000120693.9220.01100446.02310-1.019504.098803.13810HepG2SNRNP70
SMAD9ENSG00000120693.9430.39870731.65460-0.7655011.6460010.80780HepG2SRFBP1
SMAD9ENSG00000120693.9348.62220655.97710-0.9120014.2535012.98840HepG2SRSF5
SMAD9ENSG00000120693.9228.42030342.45830-0.584204.040003.22350HepG2SRSF7
SMAD9ENSG00000120693.9605.80200454.268600.415203.738303.11840HepG2SRSF9
SMAD9ENSG00000120693.9201.98290635.23710-1.6531037.1412035.76390HepG2SSB
SMAD9ENSG00000120693.9146.99480374.60370-1.349609.755007.62820HepG2STAU1
SMAD9ENSG00000120693.9469.69570746.06550-0.6676010.220309.15190HepG2SUCLG1
SMAD9ENSG00000120693.9275.86710490.43900-0.830105.505503.63070HepG2SUGP2
SMAD9ENSG00000120693.9266.41570378.70520-0.507403.373802.34230HepG2SUPT6H
SMAD9ENSG00000120693.9146.93150374.22280-1.3488010.890609.69580HepG2SUPV3L1
SMAD9ENSG00000120693.9704.00180501.890200.488104.579603.88640HepG2TAF15
SMAD9ENSG00000120693.9201.46360394.71270-0.970307.905606.76240HepG2TARDBP
SMAD9ENSG00000120693.9257.68100475.68640-0.884403.828402.58360HepG2TBRG4
SMAD9ENSG00000120693.9581.07140461.168500.333302.157701.41740HepG2TIA1
SMAD9ENSG00000120693.9137.93730494.92290-1.8432031.1385029.78920HepG2TIAL1
SMAD9ENSG00000120693.9350.07100499.36900-0.512504.591803.90300HepG2TRIM56
SMAD9ENSG00000120693.9473.81310649.05290-0.454003.621802.60890HepG2TUFM
SMAD9ENSG00000120693.9349.40450479.75590-0.457402.630402.01670HepG2U2AF1
SMAD9ENSG00000120693.9458.94440686.97170-0.581903.906002.90330HepG2UBE2L3
SMAD9ENSG00000120693.9153.96390221.07410-0.521902.014501.36670HepG2UCHL5
SMAD9ENSG00000120693.9195.00130393.05490-1.011208.862807.73240HepG2UPF1
SMAD9ENSG00000120693.9164.33460342.70900-1.060305.847304.35120HepG2UPF2
SMAD9ENSG00000120693.9119.58470379.47650-1.6660022.6708021.20240HepG2UTP3
SMAD9ENSG00000120693.9246.39060520.87600-1.080009.130207.17260HepG2XPO5
SMAD9ENSG00000120693.9411.22950633.55740-0.623503.654702.43440HepG2XRCC6
SMAD9ENSG00000120693.9205.76640368.38090-0.840205.109204.13120HepG2XRN2
SMAD9ENSG00000120693.9106.57260423.44760-1.9903035.8747033.99940HepG2ZC3H8
SMAD9ENSG00000120693.9302.02670432.28280-0.517304.518903.86410HepG2ZNF622
SMAD9ENSG00000120693.913.059800.801104.026902.309701.61540K562GRSF1
SMAD9ENSG00000120693.915.347301.981502.953202.616101.82890K562MTPAP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMAD9 is not available on ENCORE database.





1 RBPs can affect the splicing of SMAD9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESMAD9ENSG00000120693.9chr13-3744140937441520374396733743989537446794374470520.504000.000200.02078includedHepG2IGF2BP3

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMAD9 is not avaliable on ENCORE database.