SEPN1

General Information

Gene Name       : SEPN1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SEPN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SEPN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SEPN1 RNA is bound by 21 proteins.  







eCLIP assay for SEPN1 is not avaliable on ENCORE database.





21 proteins are bound to SEPN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr12614436426144523+3'-UTR,intron-Distal3.221253.09748HepG2ILF3
chr12614462026144696+3'-UTR,intron-Distal6.9598731.17039HepG2PCBP2
chr12614325326143306+3'-UTR,intron-Distal3.821233.50232K562IGF2BP1
chr12614434826144498+3'-UTR,intron-Distal4.6356920.42284HepG2PCBP2
chr12614267726142745+3'-UTR,intron-Distal4.255664.96452K562YBX3
chr12614353826143605+3'-UTR,intron-Distal7.3693943.86856HepG2PCBP2
chr12614341726143475+3'-UTR,intron-Distal4.053263.74262HepG2LARP4
chr12614442426144485+3'-UTR,intron-Distal3.636163.14867K562DDX55
chr12614354026143613+3'-UTR,intron-Distal3.379574.49507K562ILF3
chr12614326126143313+3'-UTR,intron-Distal4.344364.00727K562IGF2BP2
chr12614442326144492+3'-UTR,intron-Distal5.143035.98124HepG2DDX55
chr12614324926143324+3'-UTR,intron-Distal4.372755.91383HepG2DDX55
chr12614438626144561+3'-UTR,intron-Distal5.4270012.17370K562PABPC4
chr12614305026143126+3'-UTR,intron-Distal3.784574.78882K562IGF2BP2
chr12614441526144495+3'-UTR,intron-Distal3.298834.48159HepG2LARP4
chr12614354726143607+3'-UTR,intron-Distal3.608289.54233K562PABPC4
chr12614457526144656+3'-UTR,intron-Distal4.380934.60160HepG2LARP4
chr12614325526143305+3'-UTR,intron-Distal3.092566.01570HepG2LARP4
chr12614325726143312+3'-UTR,intron-Distal3.474973.85040HepG2IGF2BP1
chr12614423026144288+3'-UTR,intron-Distal4.010183.31330K562UPF1
chr12612668326126779+5'-UTR,CDS5.5968718.21641HepG2DDX3X
chr12613801126138064+CDS,intron-Proximal4.648514.68690HepG2PRPF8
chr12613158526131663+CDS,intron-Proximal4.158643.70678K562BUD13
chr12613836926138443+CDS,intron-Proximal5.099907.88608K562AGGF1
chr12612677926126904+CDS4.0735916.83699HepG2DDX3X
chr12613836726138427+CDS,intron-Proximal5.314047.28294K562AQR
chr12613914726139190+CDS,intron-Distal,intron-Proximal4.596445.18780K562AGGF1
chr12612707026127183+intron-Distal3.340374.10845K562DROSHA
chr12612706926127156+intron-Distal4.352863.54095K562FAM120A
chr12612728826127397+intron-Distal5.941787.64819K562DROSHA
chr12612706326127146+intron-Distal4.255413.58513HepG2GTF2F1
chr12612706426127239+intron-Distal5.3523413.41992K562GTF2F1
chr12612708726127174+intron-Distal3.015953.67092K562PRPF8
chr12612706026127171+intron-Distal3.337693.29499HepG2PRPF4
chr12612706526127174+intron-Distal4.319314.71107K562CSTF2T
chr12612708626127170+intron-Distal4.501075.63763K562AQR
chr12613868226138736+intron-Distal5.000125.63362K562AGGF1
chr12612706426127170+intron-Distal5.0544811.15861HepG2FAM120A
chr12613868226138745+intron-Distal4.014093.80954K562HNRNPL
chr12613899226139087+intron-Distal,intron-Proximal4.500127.90174K562AGGF1
chr12612707726127170+intron-Distal4.565343.94788K562AKAP8L
chr12613908726139135+intron-Distal,intron-Proximal3.908684.47419K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SEPN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SEPN1 is not available on ENCORE database.

  • 103 RBPs can affect the levels of SEPN1.  








The Knockdown/knockout RNA-Seq assay for SEPN1 is not available on ENCORE database.





103 RBPs can affect the gene expression of SEPN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SEPN1ENSG00000162430.121729.159601258.523700.458208.729707.77350HepG2ACO1
SEPN1ENSG00000162430.122115.165901307.570400.693806.899506.10110HepG2AKAP1
SEPN1ENSG00000162430.122210.107001647.532200.423703.206202.08850HepG2AKAP8
SEPN1ENSG00000162430.121422.994001827.67540-0.361103.599102.00650HepG2ATP5C1
SEPN1ENSG00000162430.121294.468201720.30380-0.410303.766403.07950HepG2BOP1
SEPN1ENSG00000162430.12741.222701027.84710-0.471603.698802.81360HepG2CIRBP
SEPN1ENSG00000162430.12933.324401258.28870-0.431006.998706.02840HepG2CKAP4
SEPN1ENSG00000162430.121972.395901579.367100.320502.153501.53740HepG2CPSF6
SEPN1ENSG00000162430.12586.81610945.28830-0.687808.573206.98330HepG2DDX24
SEPN1ENSG00000162430.121746.024901252.427200.479204.029703.28610HepG2DDX3X
SEPN1ENSG00000162430.122265.150201076.158501.0736010.113809.01300HepG2DDX6
SEPN1ENSG00000162430.12750.397601015.25150-0.436103.715502.58670HepG2DHX30
SEPN1ENSG00000162430.12955.272901204.07610-0.333902.785502.10610HepG2DKC1
SEPN1ENSG00000162430.121336.990601043.430600.357602.929902.26180HepG2DNAJC2
SEPN1ENSG00000162430.121530.166801034.241800.565005.257004.45520HepG2EIF2S1
SEPN1ENSG00000162430.121003.537701472.57930-0.553309.487308.11740HepG2EIF4G1
SEPN1ENSG00000162430.12992.251301410.63870-0.507604.992303.91940HepG2EIF4G2
SEPN1ENSG00000162430.121034.234501984.93240-0.9405030.7973029.17160HepG2ETF1
SEPN1ENSG00000162430.123022.189902045.831000.562805.109504.09310HepG2FIP1L1
SEPN1ENSG00000162430.121734.386901153.485800.588305.903704.91840HepG2FXR1
SEPN1ENSG00000162430.121340.51880909.395100.559705.158103.93100HepG2GEMIN5
SEPN1ENSG00000162430.122203.415001790.430400.299301.938101.39630HepG2GPKOW
SEPN1ENSG00000162430.121428.045701201.553200.249002.571601.62490HepG2HDGF
SEPN1ENSG00000162430.121778.568501524.468300.222302.100701.46950HepG2HNRNPF
SEPN1ENSG00000162430.121051.481001708.63210-0.700408.413507.37960HepG2HNRNPLL
SEPN1ENSG00000162430.121384.529301174.253800.237602.441601.86990HepG2HNRNPU
SEPN1ENSG00000162430.121538.286901199.453600.358805.642404.62780HepG2ILF2
SEPN1ENSG00000162430.121237.93340986.247000.327802.355901.31370HepG2LARP7
SEPN1ENSG00000162430.121745.580001480.107500.237902.063301.40200HepG2NOL12
SEPN1ENSG00000162430.121127.881201514.96040-0.425703.734002.86700HepG2NSUN2
SEPN1ENSG00000162430.121545.25100539.113101.519104.117501.85170HepG2NUFIP2
SEPN1ENSG00000162430.12285.05350868.15490-1.606709.815508.10510HepG2PABPC1
SEPN1ENSG00000162430.121661.034901162.252700.515109.333007.92800HepG2PARN
SEPN1ENSG00000162430.12966.655601159.61540-0.262602.446501.86780HepG2PCBP1
SEPN1ENSG00000162430.12534.00690691.66790-0.373202.448101.68660HepG2PRPF8
SEPN1ENSG00000162430.121490.756701179.990600.337204.329503.67830HepG2PTBP1
SEPN1ENSG00000162430.122446.916701412.888600.7922014.7257013.49650HepG2PUF60
SEPN1ENSG00000162430.121773.881201499.839300.242003.395702.75250HepG2PUM1
SEPN1ENSG00000162430.12929.041201281.89370-0.464507.599806.66230HepG2PUS1
SEPN1ENSG00000162430.121776.255901277.876800.475006.733005.82100HepG2QKI
SEPN1ENSG00000162430.12483.604501007.00260-1.058202.514701.84130HepG2RAVER1
SEPN1ENSG00000162430.121347.16490542.708601.311604.730902.28410HepG2RBM17
SEPN1ENSG00000162430.12692.68870965.73630-0.479403.798802.55200HepG2RCC2
SEPN1ENSG00000162430.121234.786001642.33810-0.411503.945403.15330HepG2RPLP0
SEPN1ENSG00000162430.121532.80570993.958600.624808.426907.42370HepG2RPS19
SEPN1ENSG00000162430.121424.129601119.613200.347002.278701.30870HepG2RPS5
SEPN1ENSG00000162430.121534.44880524.249001.549306.616604.37000HepG2SF1
SEPN1ENSG00000162430.121273.427501691.26290-0.409403.566202.77340HepG2SF3B1
SEPN1ENSG00000162430.121540.580701228.453400.326504.073403.37840HepG2SF3B4
SEPN1ENSG00000162430.121382.861401873.80590-0.438308.532207.78470HepG2SRFBP1
SEPN1ENSG00000162430.12648.848101282.26760-0.9827024.4299023.32980HepG2SRSF1
SEPN1ENSG00000162430.12994.480101819.64940-0.871609.433607.50570HepG2SRSF3
SEPN1ENSG00000162430.12709.854501626.89180-1.1965042.8280041.39250HepG2SSB
SEPN1ENSG00000162430.121295.887001809.38360-0.481603.286401.83220HepG2SUGP2
SEPN1ENSG00000162430.121747.326301381.035400.339302.759201.81970HepG2SUPT6H
SEPN1ENSG00000162430.12635.22940892.93570-0.491303.175202.45620HepG2SUPV3L1
SEPN1ENSG00000162430.122361.684701665.136200.504105.771204.77890HepG2TARDBP
SEPN1ENSG00000162430.121502.742801151.217900.384305.706304.94920HepG2TRIM56
SEPN1ENSG00000162430.121003.001301749.80470-0.8029011.8382010.51150HepG2U2AF1
SEPN1ENSG00000162430.121435.93870544.973101.397605.568004.12290HepG2U2AF2
SEPN1ENSG00000162430.12381.99630527.41190-0.465402.808502.04250HepG2UCHL5
SEPN1ENSG00000162430.122014.881201392.671800.5327012.1413010.86790HepG2UPF1
SEPN1ENSG00000162430.121814.319901431.479900.341804.569903.26290HepG2UTP18
SEPN1ENSG00000162430.12421.532101453.51540-1.7858083.8835081.29650HepG2ZC3H8
SEPN1ENSG00000162430.122489.506601531.673900.7007026.0642024.81620HepG2ZNF622
SEPN1ENSG00000162430.12560.42080770.96470-0.460203.525202.17850K562AARS
SEPN1ENSG00000162430.12989.995601671.51070-0.7557011.7897010.31430K562AKAP8L
SEPN1ENSG00000162430.12561.124001130.46910-1.0105015.1422013.92070K562AQR
SEPN1ENSG00000162430.121439.800501753.74330-0.284603.190502.20540K562ATP5C1
SEPN1ENSG00000162430.12698.19500917.91260-0.394702.620401.77330K562BOP1
SEPN1ENSG00000162430.121046.94890769.314300.444403.584302.35050K562CCAR1
SEPN1ENSG00000162430.121971.747601493.025200.401105.692204.05660K562CPEB4
SEPN1ENSG00000162430.121213.019701946.54560-0.6823012.4165010.43580K562CELF1
SEPN1ENSG00000162430.12902.43840657.108300.457602.361001.40150K562DDX3X
SEPN1ENSG00000162430.121303.939701798.91010-0.464207.309905.77200K562DKC1
SEPN1ENSG00000162430.12525.35030684.22490-0.381202.564701.68910K562EFTUD2
SEPN1ENSG00000162430.12892.50640721.721800.306302.741201.54130K562EIF2S1
SEPN1ENSG00000162430.121521.11010951.311200.6770013.0691011.68490K562EIF2S2
SEPN1ENSG00000162430.121400.86550782.505600.840005.104003.69840K562EIF3A
SEPN1ENSG00000162430.121267.77550686.495500.884904.817103.73250K562EIF4A3
SEPN1ENSG00000162430.121330.813801582.95880-0.250302.639301.72010K562EIF4G2
SEPN1ENSG00000162430.12274.77790375.02410-0.448702.938701.55070K562FUS
SEPN1ENSG00000162430.12130.10450321.01540-1.303004.313803.38730K562G3BP2
SEPN1ENSG00000162430.12287.32570535.73350-0.898804.614302.98690K562HNRNPK
SEPN1ENSG00000162430.121084.266001396.28790-0.364903.347802.17190K562HNRNPL
SEPN1ENSG00000162430.121594.233101206.605000.401803.375702.49820K562HSPD1
SEPN1ENSG00000162430.12726.41500536.999200.435802.191501.30770K562IGF2BP2
SEPN1ENSG00000162430.12531.68490803.80120-0.596304.881902.91750K562ILF3
SEPN1ENSG00000162430.121220.041601774.02740-0.540105.212104.00800K562KIF1C
SEPN1ENSG00000162430.121133.27570855.596500.405402.931001.43170K562LIN28B
SEPN1ENSG00000162430.12988.65800752.210000.394203.097801.45550K562LSM11
SEPN1ENSG00000162430.12988.41310563.877000.8096011.012909.26090K562MAGOH
SEPN1ENSG00000162430.121353.344801687.24740-0.318102.517301.44250K562MSI2
SEPN1ENSG00000162430.121478.910001243.016800.250602.515001.74350K562MTPAP
SEPN1ENSG00000162430.12819.813901392.96920-0.764807.014805.36570K562NAA15
SEPN1ENSG00000162430.12494.94760912.89440-0.883204.065701.39120K562NFX1
SEPN1ENSG00000162430.12331.84370501.62180-0.596102.616501.66560K562PCBP2
SEPN1ENSG00000162430.12554.69170980.71560-0.822103.708701.53880K562PRPF6
SEPN1ENSG00000162430.12358.64780665.83290-0.892609.103407.74250K562PRPF8
SEPN1ENSG00000162430.121103.33390756.407400.544505.141003.85820K562PSIP1
SEPN1ENSG00000162430.12782.82620547.878300.514703.585002.84030K562PTBP1
SEPN1ENSG00000162430.12980.027001657.95930-0.758504.449403.78370K562PUS1
SEPN1ENSG00000162430.121088.063701615.20010-0.569908.825007.79320K562RBM15
SEPN1ENSG00000162430.12772.20240512.060100.592603.504401.87950K562RBM34
SEPN1ENSG00000162430.12755.65950552.628500.451303.111301.94550K562NELFE
SEPN1ENSG00000162430.121019.39660678.131900.588004.360003.33090K562RPS19
SEPN1ENSG00000162430.121004.69230602.074500.738607.210505.49800K562RPS3
SEPN1ENSG00000162430.12352.64740569.68120-0.691903.978602.07850K562SERBP1
SEPN1ENSG00000162430.121416.02140755.908300.905504.431802.62530K562SFPQ
SEPN1ENSG00000162430.12331.64500712.40830-1.103104.571502.87310K562SNRNP200
SEPN1ENSG00000162430.121106.91840654.192800.758709.650207.40200K562SRFBP1
SEPN1ENSG00000162430.12316.82610537.15820-0.761703.467602.68160K562SRSF1
SEPN1ENSG00000162430.12810.51000581.178700.479703.929702.64430K562SRSF4
SEPN1ENSG00000162430.12786.45380524.318500.584805.007903.85540K562TIA1
SEPN1ENSG00000162430.12705.97240514.791800.455502.674801.60410K562TRA2A
SEPN1ENSG00000162430.121106.48110772.884000.517605.087903.71170K562TRIM56
SEPN1ENSG00000162430.12166.91690310.70270-0.896402.952301.81730K562U2AF1
SEPN1ENSG00000162430.12179.89540321.04060-0.835602.758001.95530K562U2AF2
SEPN1ENSG00000162430.121926.938601464.535200.395803.168702.40220K562UPF1
SEPN1ENSG00000162430.12960.552601273.57020-0.406903.714802.68770K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SEPN1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SEPN1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SEPN1 is not avaliable on ENCORE database.