SDC1

General Information

Gene Name       : SDC1
Gene ID             : ENSG00000115884.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SDC1ENSG00000115884.102.804.743.77ENCSR000AEF
HepG2SDC1ENSG00000115884.10151.5645.2698.41ENCSR985KAT
K562SDC1ENSG00000115884.100.860.330.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SDC1 RNA is bound by 21 proteins.  







eCLIP assay for SDC1 is not avaliable on ENCORE database.





21 proteins are bound to SDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr22040168120401757-3'-UTR,intron-Distal5.3094933.53227HepG2UPF1
chr22040076120400794-3'-UTR,intron-Distal3.613745.37198HepG2IGF2BP1
chr22040137420401468-3'-UTR,intron-Distal4.1749713.19790HepG2AKAP1
chr22040131420401362-3'-UTR,intron-Distal3.492404.08943HepG2LIN28B
chr22040168620401745-3'-UTR,intron-Distal3.2707212.55741HepG2LARP4
chr22040191020401949-3'-UTR,intron-Distal,intron-Proximal3.8853213.19790HepG2AKAP1
chr22040174820401802-3'-UTR,intron-Distal3.6464910.56444HepG2AKAP1
chr22040181120401860-3'-UTR,intron-Distal4.9351422.15171HepG2UPF1
chr22040193020401998-3'-UTR,intron-Distal,intron-Proximal4.795944.66293HepG2TIA1
chr22040160320401671-3'-UTR,intron-Distal3.017797.56459HepG2STAU2
chr22040190720401943-3'-UTR,intron-Distal,intron-Proximal4.033718.16351HepG2DDX55
chr22040161620401681-3'-UTR,intron-Distal5.0552616.44743HepG2AKAP1
chr22040212720402157-3'-UTR,intron-Distal5.780588.61963HepG2AKAP1
chr22040161520401681-3'-UTR,intron-Distal6.4991238.96217HepG2UPF1
chr22040212420402184-3'-UTR,intron-Distal7.3074939.31582HepG2UPF1
chr22040505320405133-3'-UTR,CDS,intron-Distal,intron-Proximal3.662806.65114HepG2PRPF8
chr22040143120401470-3'-UTR,intron-Distal3.8761417.35766HepG2DDX3X
chr22040099520401058-3'-UTR,intron-Distal3.959396.88094HepG2LIN28B
chr22040205320402106-3'-UTR,CDS,intron-Distal3.4768110.17385HepG2IGF2BP3
chr22040220620402241-3'-UTR,intron-Distal3.763176.21364HepG2AKAP1
chr22040181220401860-3'-UTR,intron-Distal3.6487814.21614HepG2DDX55
chr22040149620401590-3'-UTR,intron-Distal7.3592235.10940HepG2UPF1
chr22040175720401811-3'-UTR,intron-Distal4.7957126.18928HepG2UPF1
chr22040167720401776-3'-UTR,intron-Distal3.0671821.74045HepG2FAM120A
chr22040240020402483-3'-UTR,intron-Distal3.9456222.63731HepG2AKAP1
chr22040217220402232-3'-UTR,intron-Distal4.3766420.38919HepG2IGF2BP1
chr22040510320405146-3'-UTR,CDS,intron-Distal,intron-Proximal3.8789819.95570HepG2RPS3
chr22040142920401478-3'-UTR,intron-Distal3.070914.40473HepG2STAU2
chr22040404320404053-3'-UTR,CDS,intron-Distal,intron-Proximal3.902518.51824HepG2RPS3
chr22040137120401407-3'-UTR,intron-Distal4.354185.87922HepG2IGF2BP3
chr22040235220402396-3'-UTR,intron-Distal3.710547.02548HepG2IGF2BP3
chr22040227020402349-3'-UTR,intron-Distal4.4034613.99519HepG2AKAP1
chr22040387820403928-3'-UTR,CDS,intron-Distal,intron-Proximal3.8864916.38988HepG2RPS3
chr22040160820401674-3'-UTR,intron-Distal4.2454310.96695HepG2IGF2BP3
chr22040180920401859-3'-UTR,intron-Distal4.204504.05830HepG2TIA1
chr22040219920402252-3'-UTR,intron-Distal5.4624016.10077HepG2UPF1
chr22040236420402400-3'-UTR,intron-Distal4.6396514.32982HepG2AKAP1
chr22040194920401970-3'-UTR,intron-Distal,intron-Proximal3.9759613.93096HepG2AKAP1
chr22040141420401464-3'-UTR,intron-Distal5.5367820.43494HepG2UPF1
chr22040227620402343-3'-UTR,intron-Distal5.3262323.43272HepG2UPF1
chr22040191420401989-3'-UTR,intron-Distal,intron-Proximal4.2508017.88276HepG2UPF1
chr22040204020402127-3'-UTR,CDS,intron-Distal3.8668915.90420HepG2AKAP1
chr22040235920402523-3'-UTR,intron-Distal6.1042974.57372HepG2UPF1
chr22040195320401982-3'-UTR,intron-Distal,intron-Proximal3.383649.21581HepG2DDX55
chr22040179620401812-3'-UTR,intron-Distal3.839196.13173HepG2DDX55
chr22040400820404013-3'-UTR,CDS,intron-Distal3.660875.18795HepG2RPS3
chr22040160920401659-3'-UTR,intron-Distal3.537388.98377HepG2IGF2BP1
chr22040223420402304-3'-UTR,intron-Distal3.0979315.79199HepG2IGF2BP1
chr22040216920402240-3'-UTR,intron-Distal3.9296015.08074HepG2IGF2BP3
chr22040225020402275-3'-UTR,intron-Distal3.881937.01627HepG2IGF2BP3
chr22040197020402013-3'-UTR,intron-Distal,intron-Proximal4.6870815.39562HepG2AKAP1
chr22040137720401414-3'-UTR,intron-Distal5.0899416.34518HepG2UPF1
chr22040205320402124-3'-UTR,CDS,intron-Distal6.2013750.82476HepG2UPF1
chr22040192820402003-3'-UTR,intron-Distal,intron-Proximal5.093784.98572HepG2TIAL1
chr22040162020401686-3'-UTR,intron-Distal3.1925611.28845HepG2DDX55
chr22040388720403972-3'-UTR,CDS,intron-Distal,intron-Proximal3.9351616.40592HepG2SND1
chr22040180220401861-3'-UTR,intron-Distal3.8147413.99991HepG2AKAP1
chr22040064820400666-3'-UTR,intron-Distal4.457593.74540HepG2IGF2BP1
chr22040168320401748-3'-UTR,intron-Distal4.5141413.93096HepG2AKAP1
chr22040168220401742-3'-UTR,intron-Distal4.0577215.92114HepG2IGF2BP1
chr22042462420424688-5'-UTR,CDS,intron-Distal3.5438126.82197HepG2DDX3X
chr22042472120424789-5'-UTR,intron-Distal4.0459232.04378HepG2RPS3
chr22042479320424850-5'-UTR,intron-Distal,intron-Proximal3.8081120.78260HepG2RPS3
chr22042480020424885-5'-UTR,intron-Distal,intron-Proximal4.993247.23427HepG2AQR
chr22042456120424699-5'-UTR,CDS,intron-Distal,intron-Proximal4.7761350.60161HepG2RPS3
chr22042479020424851-5'-UTR,intron-Distal,intron-Proximal3.9928750.29887HepG2DDX3X
chr22042512120425131-5'-UTR,intron-Distal4.7107210.52110HepG2DDX3X
chr22042468820424790-5'-UTR,intron-Distal4.0486076.95833HepG2DDX3X
chr22040285820402979-CDS,intron-Distal4.1626431.17431HepG2SND1
chr22042456520424628-CDS,intron-Distal3.512273.15756HepG2EIF3H
chr22040255420402621-CDS,intron-Distal3.3966713.17647HepG2SND1
chr22042450820424599-CDS,intron-Distal,intron-Proximal4.517479.97647HepG2PRPF8
chr22040359520403664-CDS,intron-Distal,intron-Proximal3.9877715.83153HepG2SND1
chr22040288220402968-CDS,intron-Distal5.8509026.76139HepG2RPS3
chr22042395020424022-CDS,intron-Distal4.232396.24469HepG2FKBP4
chr22040357320403592-CDS,intron-Distal,intron-Proximal3.310205.47933HepG2SND1
chr22042392820424042-CDS,intron-Distal,intron-Proximal3.055447.84488HepG2NKRF
chr22040257320402608-CDS,intron-Distal4.550389.17911HepG2RPS3
chr22040262920402662-CDS,intron-Distal3.5925812.06585HepG2RPS3
chr22042394420424062-CDS,intron-Distal,intron-Proximal3.6389315.79822HepG2CSTF2T
chr22040380320403887-CDS,intron-Distal,intron-Proximal3.1803514.21049HepG2SND1
chr22040262120402696-CDS,intron-Distal3.9916115.94279HepG2SND1
chr22042396220423984-CDS,intron-Distal4.840149.13646HepG2FAM120A
chr22042456520424617-CDS,intron-Distal4.6019235.05773HepG2DDX3X
chr22040381020403878-CDS,intron-Distal,intron-Proximal4.6801232.56978HepG2RPS3
chr22041804520418097-intron-Distal3.736606.35368HepG2STAU2
chr22041993420419978-intron-Distal4.149214.28089HepG2FAM120A
chr22041994220419981-intron-Distal3.917683.55896HepG2STAU2
chr22041581920415847-intron-Distal3.968113.44758HepG2CSTF2T
chr22042420220424257-intron-Distal3.335175.05878HepG2CSTF2T
chr22042352020423576-intron-Distal4.058337.10319HepG2CSTF2T
chr22041274520412795-intron-Distal4.338643.70291HepG2FAM120A
chr22041885520418911-intron-Distal3.799967.00772HepG2STAU2
chr22042388520423921-intron-Distal3.738105.85439HepG2CSTF2T
chr22041765220417722-intron-Distal4.716026.49742HepG2STAU2
chr22041762420417688-intron-Distal4.730456.44863HepG2CSTF2T
chr22041594720415978-intron-Distal3.242443.48399HepG2CSTF2T
chr22041965420419708-intron-Distal3.475215.19666HepG2STAU2
chr22042416320424202-intron-Distal3.919455.39685HepG2CSTF2T
chr22042313120423176-intron-Distal,intron-Proximal3.917335.85439HepG2CSTF2T
chr22042450820424539-intron-Distal,intron-Proximal3.613735.39685HepG2CSTF2T
chr22042362420423674-intron-Distal3.383156.13981HepG2CSTF2T
chr22041865620418703-intron-Distal4.009123.55896HepG2STAU2
chr22041652020416571-intron-Distal3.249024.35908HepG2STAU2
chr22041121720411269-intron-Distal3.457764.92762HepG2CSTF2T
chr22041488420414916-intron-Distal3.977543.87340HepG2CSTF2T
chr22041651620416575-intron-Distal4.101914.88931HepG2FAM120A
chr22042358020423674-intron-Distal3.213723.77385HepG2NCBP2
chr22041896320419015-intron-Distal3.486854.21158HepG2CSTF2T
chr22041770720417739-intron-Distal4.494524.19345HepG2CSTF2T
chr22042384920423894-intron-Distal4.269393.25012HepG2FKBP4
chr22041772220417778-intron-Distal3.254864.16282HepG2STAU2
chr22041715020417219-intron-Distal3.169325.95498HepG2STAU2
chr22041895020419015-intron-Distal4.769267.09463HepG2STAU2
chr22041557920415653-intron-Distal4.115028.06348HepG2CSTF2T
chr22041809720418220-intron-Distal5.2340610.72682HepG2STAU2
chr22041717720417223-intron-Distal3.505114.84557HepG2CSTF2T
chr22041723720417286-intron-Distal3.680365.80161HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SDC1 is not available on ENCORE database.

  • 93 RBPs can affect the levels of SDC1.  








The Knockdown/knockout RNA-Seq assay for SDC1 is not available on ENCORE database.





93 RBPs can affect the gene expression of SDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SDC1ENSG00000115884.66344.716303816.042100.7334034.6486033.08440HepG2ACO1
SDC1ENSG00000115884.63952.188502330.144900.762109.756207.93850HepG2AKAP8
SDC1ENSG00000115884.62802.495103851.45360-0.458706.022404.04250HepG2ATP5C1
SDC1ENSG00000115884.64937.609502639.226800.9036019.5878018.21240HepG2BOP1
SDC1ENSG00000115884.61023.136001785.03020-0.803003.910102.99470HepG2CNOT7
SDC1ENSG00000115884.62982.444502044.011500.5450011.355609.37270HepG2YBX3
SDC1ENSG00000115884.6823.389301842.23280-1.161804.892603.51570HepG2CSTF2
SDC1ENSG00000115884.61524.130402112.07940-0.470703.073801.61900HepG2CSTF2T
SDC1ENSG00000115884.64324.878603205.541700.432008.698507.67980HepG2CELF1
SDC1ENSG00000115884.64098.262603446.497600.249805.003804.04960HepG2DAZAP1
SDC1ENSG00000115884.62581.393803529.24790-0.4512012.2653010.76730HepG2DDX19B
SDC1ENSG00000115884.61430.067002226.26620-0.6385010.526308.79160HepG2DDX24
SDC1ENSG00000115884.65071.978203776.589000.425402.591201.98410HepG2DDX3X
SDC1ENSG00000115884.62450.917403129.39100-0.352603.385901.95120HepG2DDX47
SDC1ENSG00000115884.68698.163602934.193701.567609.982108.62420HepG2DDX55
SDC1ENSG00000115884.65732.651203245.725100.820604.170503.42360HepG2DDX6
SDC1ENSG00000115884.62104.826603650.89330-0.7945028.7491027.14890HepG2DKC1
SDC1ENSG00000115884.63549.450802006.951700.822509.808208.54890HepG2DNAJC21
SDC1ENSG00000115884.62823.946401989.396000.505306.888505.92540HepG2DNAJC2
SDC1ENSG00000115884.63927.292903237.915500.278402.761001.59450HepG2EIF2S2
SDC1ENSG00000115884.61739.387902148.00890-0.304402.903401.79820HepG2EIF3G
SDC1ENSG00000115884.62143.820103445.72610-0.684603.058802.38720HepG2EIF4A3
SDC1ENSG00000115884.61878.827103356.32480-0.837102.558001.89430HepG2EIF4B
SDC1ENSG00000115884.61186.401703400.39400-1.5191086.1539082.94550HepG2EIF4G1
SDC1ENSG00000115884.62032.342303697.61260-0.8635017.2194014.86180HepG2ESF1
SDC1ENSG00000115884.64119.493106119.59800-0.5710019.0663017.72620HepG2ETF1
SDC1ENSG00000115884.65949.907404310.503100.464902.997702.19870HepG2FIP1L1
SDC1ENSG00000115884.61196.972002427.19550-1.019904.009302.78540HepG2FTO
SDC1ENSG00000115884.65313.394803478.855300.610905.341204.40030HepG2FXR1
SDC1ENSG00000115884.63179.222102295.450700.469802.766901.74950HepG2GNB2L1
SDC1ENSG00000115884.61347.972502026.18070-0.588007.735806.73770HepG2HNRNPA1
SDC1ENSG00000115884.63319.474104030.78040-0.280102.318401.65770HepG2HNRNPF
SDC1ENSG00000115884.64535.408603269.353300.472102.321201.67800HepG2HNRNPK
SDC1ENSG00000115884.63774.496202238.901700.753409.668208.59040HepG2HNRNPU
SDC1ENSG00000115884.64004.711102536.304000.658906.307104.47420HepG2HSPD1
SDC1ENSG00000115884.64612.029003278.693000.492202.841802.15920HepG2IGF2BP2
SDC1ENSG00000115884.62866.615002286.954500.325805.663504.64660HepG2ILF2
SDC1ENSG00000115884.62575.574101702.293800.597304.170202.65560HepG2KHDRBS1
SDC1ENSG00000115884.62959.839503488.28100-0.237004.245402.99560HepG2KIF1C
SDC1ENSG00000115884.66444.939404948.000900.381202.582901.78210HepG2LARP4
SDC1ENSG00000115884.63472.644002249.667200.626204.383002.94880HepG2LARP7
SDC1ENSG00000115884.61526.859202279.44380-0.578102.992901.89750HepG2METAP2
SDC1ENSG00000115884.65027.573903488.074400.527308.339607.00310HepG2MSI2
SDC1ENSG00000115884.62114.583402929.08420-0.470106.077504.28640HepG2NAA15
SDC1ENSG00000115884.66428.508703417.553100.9114013.0142011.41700HepG2NOL12
SDC1ENSG00000115884.61588.534901042.882200.607003.964802.25290HepG2NOLC1
SDC1ENSG00000115884.65749.978502696.073501.092608.257906.32210HepG2NONO
SDC1ENSG00000115884.61141.081702324.05220-1.0262013.7131012.18230HepG2NSUN2
SDC1ENSG00000115884.6876.999801627.91930-0.892407.026704.61250HepG2PA2G4
SDC1ENSG00000115884.62566.067803456.23170-0.429609.298308.29220HepG2PCBP1
SDC1ENSG00000115884.61899.235602759.76160-0.5391012.5593011.08900HepG2PRPF4
SDC1ENSG00000115884.63977.177403516.963100.177302.071601.58590HepG2PTBP1
SDC1ENSG00000115884.65039.940403262.421900.627408.506307.53740HepG2PUF60
SDC1ENSG00000115884.64212.093503463.284800.282306.868106.01930HepG2PUM1
SDC1ENSG00000115884.67460.338805114.797600.5445013.7140012.73550HepG2RBM22
SDC1ENSG00000115884.62833.115703456.74070-0.287002.762402.08840HepG2RBM25
SDC1ENSG00000115884.63095.179203645.48510-0.236103.126302.47670HepG2RECQL
SDC1ENSG00000115884.63799.456102119.780500.8418016.1630014.84930HepG2RPS19
SDC1ENSG00000115884.64115.706802501.743700.718103.619802.70810HepG2RPS2
SDC1ENSG00000115884.62530.730901793.796300.496403.480702.58220HepG2RPS3A
SDC1ENSG00000115884.61350.903202237.06660-0.727702.610201.84440HepG2RRP9
SDC1ENSG00000115884.62251.259201993.808400.175102.005501.44290HepG2SAFB2
SDC1ENSG00000115884.64514.280103326.823200.440303.190402.46500HepG2SF3A3
SDC1ENSG00000115884.61070.640302593.99860-1.2767020.9360019.18990HepG2SF3B1
SDC1ENSG00000115884.63889.384403128.318100.314106.128005.14880HepG2SLBP
SDC1ENSG00000115884.63798.086602325.062700.7079016.4952015.12640HepG2SMN1
SDC1ENSG00000115884.63711.373202270.626000.708803.448602.36330HepG2SMNDC1
SDC1ENSG00000115884.61630.460802886.32490-0.824007.372406.09240HepG2SNRNP70
SDC1ENSG00000115884.65265.006705776.88020-0.133901.909201.47000HepG2SRFBP1
SDC1ENSG00000115884.63167.393503821.79610-0.271004.457103.89230HepG2SRSF1
SDC1ENSG00000115884.66687.352003221.262201.0537060.0443057.67980HepG2SRSF5
SDC1ENSG00000115884.62919.985303959.93620-0.439503.048802.32410HepG2SRSF7
SDC1ENSG00000115884.62608.488803109.30920-0.253403.800003.17520HepG2SRSF9
SDC1ENSG00000115884.62204.891705015.53310-1.1857073.2833071.56360HepG2SSB
SDC1ENSG00000115884.65871.916003663.380500.6806032.6595030.93220HepG2SUCLG1
SDC1ENSG00000115884.61597.156502558.56280-0.679804.993903.21380HepG2SUGP2
SDC1ENSG00000115884.62256.429702910.17370-0.367104.104502.97030HepG2SUPT6H
SDC1ENSG00000115884.63306.888202555.118200.372003.577302.76550HepG2TARDBP
SDC1ENSG00000115884.63103.657502194.972200.4997012.1448011.08480HepG2TRIM56
SDC1ENSG00000115884.64830.159903187.378500.5996011.489909.51000HepG2TUFM
SDC1ENSG00000115884.63656.939102079.557200.814302.368001.46410HepG2U2AF2
SDC1ENSG00000115884.6728.391201724.81340-1.243705.095704.05760HepG2UCHL5
SDC1ENSG00000115884.64495.558702950.386000.6075013.7303012.39990HepG2UPF1
SDC1ENSG00000115884.62300.335803032.56570-0.398707.086905.49320HepG2UTP18
SDC1ENSG00000115884.62461.386602848.47790-0.210702.474301.90120HepG2UTP3
SDC1ENSG00000115884.62207.933101606.783200.458402.899401.77150HepG2XPO5
SDC1ENSG00000115884.64096.043602442.981300.745503.480902.29340HepG2XRCC6
SDC1ENSG00000115884.61964.289902874.84150-0.549501.918001.30720HepG2XRN2
SDC1ENSG00000115884.63105.249302723.495200.189102.691302.02830HepG2ZC3H8
SDC1ENSG00000115884.64549.662003244.856300.4875018.0106016.91760HepG2ZNF622
SDC1ENSG00000115884.655.1037018.365501.585103.646603.01140K562AGGF1
SDC1ENSG00000115884.639.388209.835102.001604.280503.23190K562MAGOH
SDC1ENSG00000115884.619.9440043.94280-1.139702.032901.41110K562UPF1
SDC1ENSG00000115884.69.1439039.10520-2.096504.537503.47230K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SDC1 is not available on ENCORE database.





1 RBPs can affect the splicing of SDC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXESDC1ENSG00000115884.6chr2-20405103204051852042456220424847204035732040405220425022204251940.084000.001080.037011includedHepG2PCBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SDC1 is not avaliable on ENCORE database.