SBDSP1

General Information

Gene Name       : SBDSP1
Gene ID             : ENSG00000225648.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SBDSP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SBDSP1ENSG00000225648.513.2414.7213.98ENCSR000AEF
HepG2SBDSP1ENSG00000225648.523.4026.2724.84ENCSR985KAT
K562SBDSP1ENSG00000225648.538.1334.4836.30ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SBDSP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SBDSP1 RNA is bound by 2 proteins.  







eCLIP assay for SBDSP1 is not avaliable on ENCORE database.





2 proteins are bound to SBDSP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr77230055572300681+intron-Distal,intron-Proximal4.176913.12843K562PRPF8
chr77230170272301766+intron-Distal4.560946.79651HepG2HNRNPC
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SBDSP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SBDSP1 is not available on ENCORE database.

  • 111 RBPs can affect the levels of SBDSP1.  








The Knockdown/knockout RNA-Seq assay for SBDSP1 is not available on ENCORE database.





111 RBPs can affect the gene expression of SBDSP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SBDSP1ENSG00000225648.1372.16400266.705300.480603.447402.78150HepG2ACO1
SBDSP1ENSG00000225648.1399.28590232.575200.779604.250503.61070HepG2AKAP1
SBDSP1ENSG00000225648.1303.47920192.457500.657003.115002.28130HepG2ASCC1
SBDSP1ENSG00000225648.1688.34340546.328900.333301.993501.47800HepG2BOP1
SBDSP1ENSG00000225648.1511.89160305.965400.742404.191303.26630HepG2CALR
SBDSP1ENSG00000225648.1308.08570182.841100.752603.958003.04310HepG2CIRBP
SBDSP1ENSG00000225648.1373.31340501.56700-0.426102.211401.58850HepG2CPSF6
SBDSP1ENSG00000225648.1410.64070213.205700.945509.974108.10460HepG2YBX3
SBDSP1ENSG00000225648.1439.19460336.262800.385202.620901.99340HepG2CELF1
SBDSP1ENSG00000225648.1363.36700191.875700.921206.942705.91840HepG2DDX21
SBDSP1ENSG00000225648.1469.33750222.834601.074608.888507.82100HepG2DDX3X
SBDSP1ENSG00000225648.1367.24110191.313200.940706.299905.39740HepG2DDX6
SBDSP1ENSG00000225648.1350.51020255.173600.457902.755502.07920HepG2DKC1
SBDSP1ENSG00000225648.1248.87400171.223800.539402.413801.38110HepG2EFTUD2
SBDSP1ENSG00000225648.1432.80250250.462700.789005.114903.55440HepG2EIF2S2
SBDSP1ENSG00000225648.1297.80850166.715800.836904.921503.74210HepG2EIF3D
SBDSP1ENSG00000225648.1377.35630181.005201.059809.293607.54630HepG2EIF3G
SBDSP1ENSG00000225648.1736.10950203.414301.8554012.9742011.61610HepG2EIF4A3
SBDSP1ENSG00000225648.1506.05100356.701500.504504.382903.37210HepG2EIF4G1
SBDSP1ENSG00000225648.1191.94450341.69140-0.832005.663104.52120HepG2EIF4G2
SBDSP1ENSG00000225648.11071.93140400.178401.4214039.7041037.92440HepG2ETF1
SBDSP1ENSG00000225648.1355.53980260.649300.447802.455701.66780HepG2EWSR1
SBDSP1ENSG00000225648.1722.54290333.173301.116706.636005.49670HepG2FIP1L1
SBDSP1ENSG00000225648.1357.91180190.324900.911003.280702.55950HepG2G3BP1
SBDSP1ENSG00000225648.1298.31490201.948100.562802.191401.40380HepG2G3BP2
SBDSP1ENSG00000225648.1261.62260148.446400.817404.713603.54250HepG2GEMIN5
SBDSP1ENSG00000225648.1418.55750235.092500.832106.314905.30160HepG2HNRNPC
SBDSP1ENSG00000225648.1319.68690452.86620-0.502403.406602.61680HepG2HNRNPF
SBDSP1ENSG00000225648.1234.83040329.31260-0.487803.090502.38080HepG2HNRNPL
SBDSP1ENSG00000225648.1351.86590230.034800.613102.977201.99070HepG2HNRNPM
SBDSP1ENSG00000225648.1328.01900445.95110-0.443102.483301.79650HepG2IGF2BP1
SBDSP1ENSG00000225648.1473.25240193.490001.2903013.4774012.11270HepG2IGF2BP2
SBDSP1ENSG00000225648.1407.54640181.465601.167204.233703.01980HepG2IGF2BP3
SBDSP1ENSG00000225648.1942.30660472.352600.996209.954708.37970HepG2LARP4
SBDSP1ENSG00000225648.1679.72760205.152901.7282026.0667024.20270HepG2MAGOH
SBDSP1ENSG00000225648.1387.79060269.902000.522702.221501.49240HepG2MSI2
SBDSP1ENSG00000225648.1416.48250211.206800.979507.595506.57170HepG2NCBP2
SBDSP1ENSG00000225648.1476.91530258.879600.881404.899803.69040HepG2PABPC1
SBDSP1ENSG00000225648.1348.98450188.187300.890906.189405.12130HepG2PABPC4
SBDSP1ENSG00000225648.1323.60640231.158800.485302.949002.07800HepG2PARN
SBDSP1ENSG00000225648.1336.84330210.894400.675505.444204.63900HepG2PCBP1
SBDSP1ENSG00000225648.1396.15540199.603100.988806.541605.00020HepG2PCBP2
SBDSP1ENSG00000225648.1440.69620254.003200.794804.268102.38750HepG2PNPT1
SBDSP1ENSG00000225648.1431.90360209.833601.041404.945703.35280HepG2PRPF6
SBDSP1ENSG00000225648.1481.46960363.296300.406203.373002.73230HepG2PUM1
SBDSP1ENSG00000225648.1477.55240363.023400.395502.546501.90240HepG2PUM2
SBDSP1ENSG00000225648.1531.63700192.625701.4645011.059809.71860HepG2RAVER1
SBDSP1ENSG00000225648.1589.74830334.467900.818109.606808.77290HepG2RBM22
SBDSP1ENSG00000225648.1291.66160210.923000.467502.100801.50790HepG2RBM25
SBDSP1ENSG00000225648.1431.14450273.559900.656203.487201.77170HepG2RBM47
SBDSP1ENSG00000225648.1376.02350238.828100.654805.051404.35660HepG2NELFE
SBDSP1ENSG00000225648.1300.18830222.472100.432102.340301.76700HepG2RECQL
SBDSP1ENSG00000225648.1923.70530487.739900.9212012.9941011.71000HepG2RPLP0
SBDSP1ENSG00000225648.1377.11180162.197501.2171012.2961011.11240HepG2RPS19
SBDSP1ENSG00000225648.1385.34510230.304000.742504.836203.79630HepG2RPS2
SBDSP1ENSG00000225648.1399.54520284.404500.490302.166001.45790HepG2RPS3A
SBDSP1ENSG00000225648.1299.70250202.978800.562102.933802.12710HepG2RRP9
SBDSP1ENSG00000225648.11221.61510360.605601.7602011.275409.85140HepG2SF3A3
SBDSP1ENSG00000225648.1387.16550537.08780-0.472202.985802.25290HepG2SF3B1
SBDSP1ENSG00000225648.1396.43100223.400900.827307.779006.86700HepG2SF3B4
SBDSP1ENSG00000225648.1246.84460328.16290-0.410802.261501.61640HepG2SLBP
SBDSP1ENSG00000225648.1359.15300242.530000.566304.320503.54830HepG2SMN1
SBDSP1ENSG00000225648.1549.44880377.756500.540404.999404.38180HepG2SRFBP1
SBDSP1ENSG00000225648.1519.31200233.199801.1549010.625609.83120HepG2SRSF1
SBDSP1ENSG00000225648.1473.77060337.909300.487502.166101.60470HepG2SRSF5
SBDSP1ENSG00000225648.1311.46820189.735500.715005.942105.18920HepG2SRSF9
SBDSP1ENSG00000225648.1517.09260327.959800.656806.826906.08990HepG2SSB
SBDSP1ENSG00000225648.1438.35900247.395700.825205.749104.11070HepG2STIP1
SBDSP1ENSG00000225648.1554.19350384.283500.528104.234603.49440HepG2SUCLG1
SBDSP1ENSG00000225648.1618.23730264.624901.2241013.4106012.10660HepG2SUPV3L1
SBDSP1ENSG00000225648.1301.01540209.657700.521703.141902.54930HepG2TAF15
SBDSP1ENSG00000225648.1285.94620528.82330-0.887008.116206.96150HepG2TARDBP
SBDSP1ENSG00000225648.1268.64170192.595200.480002.567101.75980HepG2TIA1
SBDSP1ENSG00000225648.1469.62800226.914501.0493010.224909.36880HepG2TIAL1
SBDSP1ENSG00000225648.1848.94460285.152401.5738023.1088021.23370HepG2U2AF1
SBDSP1ENSG00000225648.1818.10940411.464500.991402.898701.88550HepG2U2AF2
SBDSP1ENSG00000225648.1377.28760242.429700.638003.576702.42560HepG2UPF2
SBDSP1ENSG00000225648.1709.64610308.757601.2005015.2285013.99240HepG2UTP3
SBDSP1ENSG00000225648.1311.70680189.411600.718603.277401.89360HepG2XRCC5
SBDSP1ENSG00000225648.1650.69540211.833301.6190018.6803016.23980HepG2XRCC6
SBDSP1ENSG00000225648.1709.82630351.721801.0129014.5521013.54170HepG2ZNF622
SBDSP1ENSG00000225648.1807.10390501.169800.687407.264205.29300K562AARS
SBDSP1ENSG00000225648.11085.83780807.443700.427304.884704.16550K562AGGF1
SBDSP1ENSG00000225648.12642.869601115.621701.2442016.3556015.08680K562AQR
SBDSP1ENSG00000225648.1530.73440670.04390-0.336302.544601.30280K562BCCIP
SBDSP1ENSG00000225648.1524.78800647.53530-0.303202.329401.45000K562BCLAF1
SBDSP1ENSG00000225648.1462.05100286.946800.687205.140003.60350K562CCAR1
SBDSP1ENSG00000225648.1365.86530491.25210-0.425202.780901.72150K562CSTF2
SBDSP1ENSG00000225648.13591.539001241.689001.5322057.9347055.33140K562DDX47
SBDSP1ENSG00000225648.1465.57300308.559600.593404.163002.48850K562DNAJC21
SBDSP1ENSG00000225648.1536.54920327.070300.714003.473701.48860K562DNAJC2
SBDSP1ENSG00000225648.1986.17120291.869201.756403.086402.01720K562EIF3A
SBDSP1ENSG00000225648.11197.83090460.134401.3802030.0015027.37930K562EIF3G
SBDSP1ENSG00000225648.1853.49810363.003401.2333020.7183018.23180K562EIF4A3
SBDSP1ENSG00000225648.1944.52440377.509001.3230020.7088019.16620K562FXR1
SBDSP1ENSG00000225648.1778.28370457.839500.765403.116202.35760K562G3BP2
SBDSP1ENSG00000225648.12057.116401508.534500.447403.751502.87570K562GRSF1
SBDSP1ENSG00000225648.11050.56500548.339900.9379014.5500013.26830K562HNRNPC
SBDSP1ENSG00000225648.1646.23190471.045700.456102.841601.59070K562HNRNPK
SBDSP1ENSG00000225648.11851.444501010.987200.872805.569504.18850K562HNRNPM
SBDSP1ENSG00000225648.1588.66340968.68640-0.718602.859501.90740K562KRR1
SBDSP1ENSG00000225648.11012.48160495.618401.0305017.9284015.63240K562MAGOH
SBDSP1ENSG00000225648.1381.57100494.63790-0.374402.310101.47360K562MATR3
SBDSP1ENSG00000225648.11074.47430833.256100.366704.211703.23190K562MTPAP
SBDSP1ENSG00000225648.11121.11410700.161300.679105.056803.74570K562NAA15
SBDSP1ENSG00000225648.1729.33490925.84380-0.344203.982903.10700K562NSUN2
SBDSP1ENSG00000225648.1698.61190441.007700.663606.203204.72360K562PCBP2
SBDSP1ENSG00000225648.1931.46440466.555100.9974012.8403011.21220K562PRPF8
SBDSP1ENSG00000225648.1774.48960481.512100.685608.183407.08220K562PTBP1
SBDSP1ENSG00000225648.12590.790301494.736200.793403.760302.81330K562PUF60
SBDSP1ENSG00000225648.12208.050901589.377500.474202.913001.81530K562PUM1
SBDSP1ENSG00000225648.11439.21330833.371400.788106.116205.34740K562PUS1
SBDSP1ENSG00000225648.11312.47090475.260601.4654024.9547022.56350K562RPS19
SBDSP1ENSG00000225648.12084.747601165.623300.838706.854404.30590K562RPS3A
SBDSP1ENSG00000225648.1762.21280505.704300.591804.354203.06120K562RPS3
SBDSP1ENSG00000225648.1697.68120477.056800.548302.731501.41180K562RRP9
SBDSP1ENSG00000225648.1762.63880505.916200.592005.603304.06270K562SAFB
SBDSP1ENSG00000225648.1755.44920523.006400.530404.321202.47730K562SDAD1
SBDSP1ENSG00000225648.1685.50520476.536700.524502.732401.88260K562SF3B4
SBDSP1ENSG00000225648.1713.35050472.023900.595705.728504.71830K562SRSF1
SBDSP1ENSG00000225648.11147.13670569.429501.0103019.4474017.36440K562SYNCRIP
SBDSP1ENSG00000225648.1385.96750502.40200-0.380402.119901.30830K562TRIM56
SBDSP1ENSG00000225648.1732.41790444.317300.721006.221404.44090K562U2AF1
SBDSP1ENSG00000225648.1643.03350458.712200.487204.367103.36270K562U2AF2
SBDSP1ENSG00000225648.1664.14130840.00400-0.338902.511301.67470K562WDR3
SBDSP1ENSG00000225648.11530.22070873.487600.8088022.5116020.45360K562WDR43
SBDSP1ENSG00000225648.11650.37450520.484101.6648017.0881013.02590K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SBDSP1 is not available on ENCORE database.





13 RBPs can affect the splicing of SBDSP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESBDSP1ENSG00000225648.1chr7+723012717230139372300085723003627230218172302378-0.186000.001920.03532excludedK562SRSF1
SESBDSP1ENSG00000225648.1chr7+723012717230139372300085723003627230218172302378-0.189000.000120.00684excludedK562PRPF8
SESBDSP1ENSG00000225648.1chr7+723012717230139372300085723003627230218172302378-0.246000.000000.00041excludedK562XRCC6
SESBDSP1ENSG00000225648.1chr7+7230430872304469723021507230237872307155723072800.577000.000000.00000includedK562AQR
SESBDSP1ENSG00000225648.1chr7+723012717230139372300085723003627230218172302378-0.097000.009480.07787excludedK562AQR
SESBDSP1ENSG00000225648.1chr7+723012717230139372300085723003627230218172302378-0.285000.000000.00030excludedK562FXR1
SESBDSP1ENSG00000225648.1chr7+7230127172301393723000857230036272302181723023780.159000.000320.05250includedK562DROSHA
SESBDSP1ENSG00000225648.1chr7+7230133072301393723000857230036272302181723023780.246000.000110.09900includedK562KHDRBS1
SESBDSP1ENSG00000225648.1chr7+723012717230140572300234723003627230218172302378-0.108000.002880.04045excludedK562PUS1
SESBDSP1ENSG00000225648.1chr7+7230127172301393723000857230036272302181723023780.197000.000000.00111includedK562UPF1
SESBDSP1ENSG00000225648.1chr7+7230127172301393723000857230036272302181723023780.149000.000780.07490includedK562CPSF6
SESBDSP1ENSG00000225648.1chr7+7230133072301393723000857230036272302181723023780.139000.002280.07534includedK562SF3B1
SESBDSP1ENSG00000225648.1chr7+7230127172301393723000857230036272302181723023780.267000.000060.05261includedK562SLBP
SESBDSP1ENSG00000225648.1chr7+7230127172301393723000857230036272302181723023780.181000.000630.08336includedK562ZC3H8
A3SSSBDSP1ENSG00000225648.1chr7+7230430872304508723043437230450872302181723023780.143000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SBDSP1 is not avaliable on ENCORE database.