RCSD1

General Information

Gene Name       : RCSD1
Gene ID             : ENSG00000198771.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RCSD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RCSD1ENSG00000198771.1035.8848.6942.28ENCSR000AEF
HepG2RCSD1ENSG00000198771.100.000.010.01ENCSR985KAT
K562RCSD1ENSG00000198771.1036.5032.5134.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RCSD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RCSD1 RNA is bound by 14 proteins.  







eCLIP assay for RCSD1 is not avaliable on ENCORE database.





14 proteins are bound to RCSD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1167674580167674743+3'-UTR3.9285225.31715K562FAM120A
chr1167675415167675458+3'-UTR5.130336.64872K562UPF1
chr1167675137167675241+3'-UTR3.4662614.92654K562FAM120A
chr1167674907167674998+3'-UTR3.590213.71253K562LIN28B
chr1167675209167675218+3'-UTR3.947413.20319K562UPF1
chr1167675078167675125+3'-UTR3.796624.24288K562UPF1
chr1167675253167675366+3'-UTR4.315044.20872K562IGF2BP1
chr1167675024167675040+3'-UTR3.663893.06830K562UPF1
chr1167675403167675455+3'-UTR3.156364.67068K562FAM120A
chr1167674761167674802+3'-UTR3.030284.66232K562FAM120A
chr1167674675167674770+3'-UTR4.9988212.17194K562UPF1
chr1167674998167675075+3'-UTR4.553834.34615K562LIN28B
chr1167674204167674257+3'-UTR3.099083.68829K562YBX3
chr1167599479167599594+5'-UTR6.048835.39850K562DDX3X
chr1167599594167599667+5'-UTR,CDS,intron-Proximal3.917313.59926K562DDX3X
chr1167666963167667080+CDS,intron-Proximal4.521614.28644K562PUM1
chr1167653216167653287+CDS,intron-Proximal4.734824.86944K562AQR
chr1167663511167663540+CDS,intron-Proximal3.823927.28749K562YBX3
chr1167666652167666746+CDS4.652884.72838K562UCHL5
chr1167611223167611268+intron-Distal3.530163.09172K562XRCC6
chr1167600436167600493+intron-Distal3.908843.02324K562XRN2
chr1167631676167631755+intron-Distal3.779513.23532K562MATR3
chr1167631646167631701+intron-Distal5.0921010.02898K562PTBP1
chr1167631701167631746+intron-Distal5.457736.90462K562PTBP1
chr1167604181167604281+intron-Distal5.463039.16624K562TARDBP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RCSD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RCSD1 is not available on ENCORE database.

  • 109 RBPs can affect the levels of RCSD1.  








The Knockdown/knockout RNA-Seq assay for RCSD1 is not available on ENCORE database.





109 RBPs can affect the gene expression of RCSD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RCSD1ENSG00000198771.61184.125401564.19730-0.401603.748702.35320K562AARS
RCSD1ENSG00000198771.6904.701402657.56170-1.5546023.9323022.37760K562AGGF1
RCSD1ENSG00000198771.61841.656502919.92540-0.664904.943003.53650K562AKAP8
RCSD1ENSG00000198771.6744.427502765.23140-1.8932028.8958026.38420K562AKAP8L
RCSD1ENSG00000198771.6847.408102865.56360-1.7577054.0613051.77810K562AQR
RCSD1ENSG00000198771.61732.928102901.23850-0.743507.546005.92550K562ATP5C1
RCSD1ENSG00000198771.62661.652103393.63650-0.350503.761501.44850K562AUH
RCSD1ENSG00000198771.61345.176001660.18010-0.303503.472901.96380K562BCCIP
RCSD1ENSG00000198771.61151.422001604.28570-0.478508.412506.70070K562BCLAF1
RCSD1ENSG00000198771.6814.865501072.24070-0.396003.087601.96240K562CCAR1
RCSD1ENSG00000198771.61983.522003176.19830-0.679205.079703.43500K562CCDC124
RCSD1ENSG00000198771.61252.391801803.96130-0.526504.535802.60870K562CKAP4
RCSD1ENSG00000198771.61288.817602709.72600-1.072106.260004.60520K562CNOT7
RCSD1ENSG00000198771.62038.226702635.90040-0.371005.852404.19750K562CPEB4
RCSD1ENSG00000198771.6677.774701146.23520-0.758004.296801.93670K562CPSF7
RCSD1ENSG00000198771.6977.898001217.08960-0.315702.716301.66710K562CSTF2
RCSD1ENSG00000198771.62222.030204300.10630-0.9525030.0419027.39220K562CELF1
RCSD1ENSG00000198771.62296.056003118.04090-0.441503.441301.80300K562DDX19B
RCSD1ENSG00000198771.62107.859702727.22460-0.371706.420305.48520K562DDX47
RCSD1ENSG00000198771.6921.318801445.61900-0.649904.095201.47100K562DDX55
RCSD1ENSG00000198771.6870.122701200.27770-0.464103.609502.06030K562DHX30
RCSD1ENSG00000198771.61891.325202976.10100-0.654006.315904.90640K562DKC1
RCSD1ENSG00000198771.61052.540401372.44930-0.382903.083302.11670K562EFTUD2
RCSD1ENSG00000198771.63753.587901815.668801.0477041.9356039.79590K562EIF2S2
RCSD1ENSG00000198771.6781.920101090.69240-0.480202.365901.44230K562EIF3A
RCSD1ENSG00000198771.6870.591601469.24550-0.755007.817505.92920K562EIF3D
RCSD1ENSG00000198771.6659.045801011.15630-0.617608.089406.73670K562EIF3G
RCSD1ENSG00000198771.6590.22070972.32070-0.720202.793801.63280K562EIF4B
RCSD1ENSG00000198771.61938.637603496.83750-0.8510028.7176026.00110K562EIF4G2
RCSD1ENSG00000198771.6559.13880942.49550-0.753302.680301.41200K562EWSR1
RCSD1ENSG00000198771.61049.119101426.68770-0.443504.080903.03770K562FIP1L1
RCSD1ENSG00000198771.6608.89650893.89760-0.553904.262502.55640K562FUS
RCSD1ENSG00000198771.6964.501901453.18510-0.591407.668205.16620K562G3BP1
RCSD1ENSG00000198771.6662.11900877.81530-0.406802.023801.43160K562G3BP2
RCSD1ENSG00000198771.6941.565101972.73870-1.0671028.5409025.61070K562GLRX3
RCSD1ENSG00000198771.61192.566802430.64150-1.027307.430104.58930K562HNRNPA0
RCSD1ENSG00000198771.61313.761502261.60410-0.7836015.4650013.23920K562HNRNPA1
RCSD1ENSG00000198771.6691.630602658.91940-1.942807.318305.00090K562HNRNPA2B1
RCSD1ENSG00000198771.6962.667801528.52490-0.667009.312807.16240K562HNRNPF
RCSD1ENSG00000198771.6820.934901517.97250-0.8868012.220209.57200K562HNRNPK
RCSD1ENSG00000198771.61746.141601173.507500.573205.416104.05770K562HNRNPM
RCSD1ENSG00000198771.61341.769302504.60350-0.9004025.2622022.79170K562HNRNPU
RCSD1ENSG00000198771.63062.065101934.234600.662609.784808.31520K562HSPD1
RCSD1ENSG00000198771.6818.640101520.29010-0.8930010.493908.06360K562IGF2BP2
RCSD1ENSG00000198771.61028.424401546.19940-0.588307.241605.18850K562IGF2BP3
RCSD1ENSG00000198771.6790.430701120.15960-0.503004.263402.40620K562ILF3
RCSD1ENSG00000198771.61238.678002934.88890-1.2445011.650109.58720K562KIF1C
RCSD1ENSG00000198771.6879.850201657.32680-0.9135015.9879012.90690K562LARP7
RCSD1ENSG00000198771.61219.332801735.91650-0.509604.901602.83500K562LIN28B
RCSD1ENSG00000198771.61660.932402809.17790-0.758203.483502.23250K562MAK16
RCSD1ENSG00000198771.6839.361001594.12130-0.9254018.5394016.09040K562MATR3
RCSD1ENSG00000198771.61941.867903287.77680-0.759705.779204.37750K562MBNL1
RCSD1ENSG00000198771.62352.395203727.20230-0.6640010.613608.52000K562MSI2
RCSD1ENSG00000198771.61412.101302074.10850-0.5546011.121009.61750K562MTPAP
RCSD1ENSG00000198771.6786.701402304.46820-1.5505019.3494016.39050K562NAA15
RCSD1ENSG00000198771.6558.51480928.88680-0.733904.376902.06440K562PABPC4
RCSD1ENSG00000198771.6741.149902327.33940-1.650805.547404.00990K562PABPN1
RCSD1ENSG00000198771.6970.951801421.24010-0.549706.153404.67980K562PCBP2
RCSD1ENSG00000198771.61303.959801671.15830-0.357902.883501.42590K562PHF6
RCSD1ENSG00000198771.61469.633702410.01040-0.713604.079501.88670K562PPIL4
RCSD1ENSG00000198771.61352.420302768.45910-1.033503.034301.48910K562PPP1R8
RCSD1ENSG00000198771.6741.166901335.55710-0.8496011.6109010.06560K562PRPF8
RCSD1ENSG00000198771.61213.768601534.77210-0.338502.911501.97910K562PSIP1
RCSD1ENSG00000198771.61166.350701552.01510-0.412104.535403.70570K562PTBP1
RCSD1ENSG00000198771.62293.298003815.25020-0.7344014.1405012.28200K562PUF60
RCSD1ENSG00000198771.63353.100504058.56690-0.275503.486502.28040K562PUM1
RCSD1ENSG00000198771.6899.330902742.93720-1.6088023.9533022.36580K562PUS1
RCSD1ENSG00000198771.6731.346301143.62200-0.645003.784601.50020K562RBFOX2
RCSD1ENSG00000198771.6963.878502672.09310-1.4710023.3606021.56540K562RBM15
RCSD1ENSG00000198771.6282.76720833.53620-1.5596011.065608.27340K562RBM25
RCSD1ENSG00000198771.61133.497502863.45790-1.337004.244702.22800K562RBM39
RCSD1ENSG00000198771.61049.828101400.13440-0.415403.609702.48040K562RCC2
RCSD1ENSG00000198771.62336.895701565.932900.577506.761904.96380K562NELFE
RCSD1ENSG00000198771.61364.679302416.16810-0.824205.491803.15510K562RPS3A
RCSD1ENSG00000198771.61259.56680787.306300.677805.962204.42500K562RPS3
RCSD1ENSG00000198771.61274.885702144.44430-0.750208.312605.30970K562SAFB2
RCSD1ENSG00000198771.6868.273701151.32030-0.407103.555002.32210K562SAFB
RCSD1ENSG00000198771.61607.851502468.01970-0.618203.468101.71370K562SBDS
RCSD1ENSG00000198771.6769.846101190.34690-0.628706.808504.56250K562SDAD1
RCSD1ENSG00000198771.6482.957401142.70920-1.2425013.5357010.57420K562SERBP1
RCSD1ENSG00000198771.61006.973602129.29700-1.080402.983301.71740K562SF1
RCSD1ENSG00000198771.61452.560302274.06130-0.6467012.3378010.71620K562SF3A3
RCSD1ENSG00000198771.6614.80520932.75960-0.601404.723003.42850K562SF3B1
RCSD1ENSG00000198771.6347.77630913.64830-1.3935010.746909.00860K562SF3B4
RCSD1ENSG00000198771.61035.749102597.14270-1.326303.728302.12830K562SFPQ
RCSD1ENSG00000198771.6730.501401181.13710-0.693206.084204.20750K562SLBP
RCSD1ENSG00000198771.6747.404001035.84300-0.470803.952901.79440K562SLTM
RCSD1ENSG00000198771.61104.839302443.98990-1.145403.527802.08320K562SNRNP200
RCSD1ENSG00000198771.61065.383401327.30510-0.317102.312801.39310K562SRFBP1
RCSD1ENSG00000198771.61029.967502329.84830-1.1776033.8962031.36390K562SRPK2
RCSD1ENSG00000198771.62443.987101521.531500.6836012.3845010.88680K562SRSF1
RCSD1ENSG00000198771.61036.328101437.06910-0.471604.510003.11310K562SRSF5
RCSD1ENSG00000198771.61198.228902924.33780-1.287204.117402.23080K562SUPT6H
RCSD1ENSG00000198771.6853.072001292.80710-0.599805.544204.07010K562SUPV3L1
RCSD1ENSG00000198771.6957.372301476.21190-0.624706.310804.84000K562TIAL1
RCSD1ENSG00000198771.61228.683101568.12090-0.351902.938901.95870K562TRIM56
RCSD1ENSG00000198771.62153.460502689.00430-0.320405.452803.65790K562TROVE2
RCSD1ENSG00000198771.6270.98800851.87210-1.6524011.889409.43490K562U2AF1
RCSD1ENSG00000198771.6348.86460879.47660-1.3340010.279308.73160K562U2AF2
RCSD1ENSG00000198771.6913.693401368.42760-0.582705.983904.42150K562UCHL5
RCSD1ENSG00000198771.61951.437402443.36110-0.324303.680902.86170K562UPF1
RCSD1ENSG00000198771.61525.969902400.60400-0.6537010.972308.05650K562UPF2
RCSD1ENSG00000198771.61489.900702780.45930-0.900104.176502.47650K562UTP18
RCSD1ENSG00000198771.6495.367901940.77060-1.9701046.8052042.88400K562UTP3
RCSD1ENSG00000198771.61645.183302090.68440-0.345703.406702.43800K562WDR3
RCSD1ENSG00000198771.61196.750002174.22410-0.8614021.7778019.75080K562WDR43
RCSD1ENSG00000198771.61961.054103395.10720-0.7918016.5260013.83200K562WRN
RCSD1ENSG00000198771.61269.711602877.20200-1.180203.480401.63180K562YTHDC2
RCSD1ENSG00000198771.61809.216903228.18100-0.8354016.5161014.27370K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RCSD1 is not available on ENCORE database.





1 RBPs can affect the splicing of RCSD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERCSD1ENSG00000198771.6chr1+1676546571676547471676531361676532381676592851676593570.212000.000000.00019includedK562PTBP1
MXERCSD1ENSG00000198771.6chr1+1676546571676547471676592851676593571676531361676532381676633351676635390.284000.000100.005651includedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RCSD1 is not avaliable on ENCORE database.