RBL1

General Information

Gene Name       : RBL1
Gene ID             : ENSG00000080839.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RBL1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RBL1ENSG00000080839.1122.9116.7619.84ENCSR000AEF
HepG2RBL1ENSG00000080839.117.8816.5412.21ENCSR985KAT
K562RBL1ENSG00000080839.1112.6113.7613.18ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RBL1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RBL1 RNA is bound by 14 proteins.  







eCLIP assay for RBL1 is not avaliable on ENCORE database.





14 proteins are bound to RBL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr203562519935625271-3'-UTR,intron-Distal4.360047.06234K562PUM2
chr203569649735696563-3'-UTR,CDS,intron-Distal,intron-Proximal3.203703.94979HepG2BCLAF1
chr203562512435625199-3'-UTR,intron-Distal4.042355.81202K562PUM2
chr203572427135724400-5'-UTR,CDS,intron-Distal,intron-Proximal5.085225.01284K562NCBP2
chr203572431035724399-5'-UTR,CDS,intron-Distal,intron-Proximal3.7249923.60852HepG2NCBP2
chr203564910835649172-CDS,intron-Distal,intron-Proximal4.937684.40745K562SF3B4
chr203569049135690584-CDS,intron-Distal4.116818.61994HepG2GRWD1
chr203567257835672651-CDS,intron-Distal3.741307.23562HepG2BCLAF1
chr203569517435695227-CDS,intron-Distal4.383985.35719HepG2GRWD1
chr203568955835689669-CDS,intron-Distal3.184275.89932K562ZNF622
chr203569058435690611-CDS,intron-Distal4.377615.13243HepG2GRWD1
chr203572413135724199-CDS,intron-Distal4.363655.64484HepG2PRPF8
chr203569055435690632-CDS,intron-Distal3.671636.36847HepG2BCLAF1
chr203569631835696392-CDS,intron-Distal,intron-Proximal5.181376.22530K562AQR
chr203568395535683994-CDS,intron-Distal,intron-Proximal4.665305.37137HepG2BCLAF1
chr203569516735695204-CDS,intron-Distal4.475844.43680K562ZNF622
chr203572413435724178-CDS,intron-Distal4.729054.59919HepG2AQR
chr203569549935695519-CDS,intron-Distal,intron-Proximal4.026883.02457HepG2BCLAF1
chr203568455235684648-CDS,intron-Distal,intron-Proximal3.543177.42278HepG2BCLAF1
chr203569522735695275-CDS,intron-Distal3.059073.63043HepG2GRWD1
chr203567249535672577-CDS,intron-Distal5.098878.18727K562ZNF622
chr203569639035696435-CDS,intron-Distal,intron-Proximal3.241304.74886HepG2BCLAF1
chr203568954935689669-CDS,intron-Distal4.5037813.85602HepG2BCLAF1
chr203567248935672574-CDS,intron-Distal4.551576.50203HepG2GRWD1
chr203568455535684644-CDS,intron-Distal,intron-Proximal3.878118.25234K562ZNF622
chr203568953635689660-CDS,intron-Distal3.040585.10726K562UCHL5
chr203572412035724181-CDS,intron-Distal3.860594.00320K562AQR
chr203569388835694030-intron-Distal,intron-Proximal3.219586.23972K562KHSRP
chr203564592235646052-intron-Distal4.218834.89313K562HNRNPL
chr203568157235681662-intron-Distal3.792267.26586K562KHSRP
chr203569038435690443-intron-Distal,intron-Proximal4.216573.80778HepG2QKI
chr203568148135681572-intron-Distal5.4286212.05461K562KHSRP
chr203564524435645293-intron-Distal3.605383.00349HepG2ILF3
chr203565641135656462-intron-Distal3.023743.40404HepG2ILF3
chr203572402035724099-intron-Distal4.295854.44312HepG2EFTUD2
chr203567540335675456-intron-Distal,intron-Proximal4.085045.47926K562AQR
chr203568134635681436-intron-Distal3.057863.31830K562KHSRP
chr203564894135649050-intron-Distal,intron-Proximal4.800453.62536K562AQR
chr203568170935681870-intron-Distal3.108644.95846K562HNRNPL
chr203564523835645294-intron-Distal3.018584.45327K562ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RBL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RBL1 is not available on ENCORE database.

  • 104 RBPs can affect the levels of RBL1.  








The Knockdown/knockout RNA-Seq assay for RBL1 is not available on ENCORE database.





104 RBPs can affect the gene expression of RBL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RBL1ENSG00000080839.7517.15840680.87560-0.396803.337502.67960HepG2ACO1
RBL1ENSG00000080839.7271.29880461.96690-0.767903.795502.88010HepG2ASCC1
RBL1ENSG00000080839.7540.345401079.16170-0.9980023.0112021.38190HepG2AUH
RBL1ENSG00000080839.7498.46360711.66970-0.513703.001002.02130HepG2BCCIP
RBL1ENSG00000080839.7296.96560618.38720-1.0582010.343108.74990HepG2BCLAF1
RBL1ENSG00000080839.7271.37290948.89660-1.8060038.3823036.62070HepG2BOP1
RBL1ENSG00000080839.7420.76950863.61490-1.0374016.8749015.26610HepG2CALR
RBL1ENSG00000080839.7697.185601012.89100-0.538903.492402.38610HepG2CCAR1
RBL1ENSG00000080839.7442.57920680.85960-0.621406.020205.10890HepG2CKAP4
RBL1ENSG00000080839.7393.54300871.13800-1.1464012.3561011.01970HepG2CPSF6
RBL1ENSG00000080839.7640.86120980.50390-0.6135011.4667010.12220HepG2DAZAP1
RBL1ENSG00000080839.7330.50750612.37000-0.889703.733002.95500HepG2DDX21
RBL1ENSG00000080839.7356.38580534.85700-0.585703.152902.48970HepG2DDX3X
RBL1ENSG00000080839.7368.74520699.71820-0.924108.168006.91900HepG2DDX55
RBL1ENSG00000080839.7548.31020989.24150-0.851305.314603.97290HepG2DDX59
RBL1ENSG00000080839.7160.60180459.32990-1.5160012.2261011.03620HepG2DDX6
RBL1ENSG00000080839.7349.29760585.26670-0.744603.942302.78490HepG2DHX30
RBL1ENSG00000080839.7319.16840606.83660-0.927007.953106.80930HepG2DNAJC21
RBL1ENSG00000080839.7394.23000601.36390-0.609204.601503.79640HepG2DNAJC2
RBL1ENSG00000080839.7366.22480563.34310-0.621302.357301.34050HepG2AGO1
RBL1ENSG00000080839.7207.46050441.68740-1.090207.734606.77980HepG2EIF2S1
RBL1ENSG00000080839.7772.04340967.18380-0.325102.686501.85840HepG2EIF4G1
RBL1ENSG00000080839.7553.25960926.52590-0.743908.602107.19730HepG2EIF4G2
RBL1ENSG00000080839.7702.992201239.01620-0.8176016.8555015.57670HepG2ETF1
RBL1ENSG00000080839.7501.30170872.63280-0.799703.287502.17740HepG2FTO
RBL1ENSG00000080839.7692.58230492.369600.492102.335201.69750HepG2FXR1
RBL1ENSG00000080839.7342.25190456.83930-0.416601.909601.35200HepG2G3BP1
RBL1ENSG00000080839.7677.72470484.870300.483003.206102.24610HepG2G3BP2
RBL1ENSG00000080839.7484.47330987.50070-1.0274012.1801010.92550HepG2GPKOW
RBL1ENSG00000080839.7385.77780612.64900-0.667305.270604.41830HepG2HNRNPA1
RBL1ENSG00000080839.7664.00660901.03080-0.440405.197303.98390HepG2HNRNPA2B1
RBL1ENSG00000080839.7374.21580681.42080-0.864707.739506.62820HepG2HNRNPC
RBL1ENSG00000080839.7289.22600181.293600.673803.269601.61120HepG2HNRNPD
RBL1ENSG00000080839.7518.41840766.80670-0.564707.038505.96320HepG2HNRNPF
RBL1ENSG00000080839.7665.43940893.21450-0.424705.733304.79440HepG2HNRNPL
RBL1ENSG00000080839.7369.97690942.39030-1.3489021.0367019.55890HepG2HNRNPLL
RBL1ENSG00000080839.7490.78080755.08550-0.621606.863005.76880HepG2IGF2BP1
RBL1ENSG00000080839.7789.262801069.03600-0.437702.603601.79960HepG2LARP4
RBL1ENSG00000080839.7326.03450478.97290-0.554902.304201.34180HepG2METAP2
RBL1ENSG00000080839.7524.50000835.61080-0.671906.283605.18300HepG2NSUN2
RBL1ENSG00000080839.7241.28350451.64150-0.904405.680804.65820HepG2PABPC4
RBL1ENSG00000080839.7544.82990442.304100.300701.996401.46760HepG2PCBP1
RBL1ENSG00000080839.7446.47060802.66470-0.846206.383704.86050HepG2PCBP2
RBL1ENSG00000080839.7540.02430711.80330-0.398502.158701.46790HepG2PRPF4
RBL1ENSG00000080839.7292.03900539.78250-0.886207.418406.17250HepG2PRPF8
RBL1ENSG00000080839.7632.87960928.05790-0.552305.780704.96090HepG2PUF60
RBL1ENSG00000080839.7739.23420984.43440-0.413304.161103.34720HepG2PUM2
RBL1ENSG00000080839.7351.35130487.42950-0.472303.294102.62050HepG2QKI
RBL1ENSG00000080839.7670.44050922.75870-0.460804.475403.41570HepG2RBM15
RBL1ENSG00000080839.7474.672301035.58950-1.1254024.7018023.46250HepG2RBM22
RBL1ENSG00000080839.7365.17250202.105900.853404.981802.95830HepG2RBM47
RBL1ENSG00000080839.7627.41140500.874000.324902.251301.75320HepG2NELFE
RBL1ENSG00000080839.7660.68530466.492600.502004.889304.10070HepG2RECQL
RBL1ENSG00000080839.7282.13910826.04110-1.5498028.5978026.91130HepG2RPLP0
RBL1ENSG00000080839.7428.01440760.85780-0.830005.884004.53770HepG2RPS10
RBL1ENSG00000080839.7273.35520445.26240-0.703905.572404.73380HepG2RPS19
RBL1ENSG00000080839.7416.27900694.40490-0.738207.015305.77940HepG2RPS2
RBL1ENSG00000080839.7259.72440533.95730-1.039708.945007.63830HepG2RRP9
RBL1ENSG00000080839.7416.81750602.84820-0.532403.807403.07240HepG2SAFB2
RBL1ENSG00000080839.7386.00220932.77890-1.2729020.8703019.12930HepG2SF3B1
RBL1ENSG00000080839.7535.52190789.65600-0.560303.467902.37970HepG2SMNDC1
RBL1ENSG00000080839.7519.19800753.67700-0.537703.265701.52930HepG2SND1
RBL1ENSG00000080839.7439.561501037.88060-1.2395011.9372010.32590HepG2SNRNP70
RBL1ENSG00000080839.7486.376801169.66230-1.2659037.8512036.55360HepG2SRFBP1
RBL1ENSG00000080839.7371.16110489.08740-0.398002.677002.21000HepG2SRSF1
RBL1ENSG00000080839.7729.07590916.25710-0.329703.443502.75880HepG2SRSF5
RBL1ENSG00000080839.7427.96010753.36280-0.8159013.3151011.98550HepG2SRSF7
RBL1ENSG00000080839.7296.84120397.89720-0.422702.979802.41120HepG2SRSF9
RBL1ENSG00000080839.7780.216601015.54760-0.380304.464903.84470HepG2SSB
RBL1ENSG00000080839.7411.84280295.779800.477502.530201.30160HepG2SSRP1
RBL1ENSG00000080839.7492.31500723.89310-0.556202.769101.56480HepG2SUB1
RBL1ENSG00000080839.7824.247001042.09230-0.338304.286103.54300HepG2SUCLG1
RBL1ENSG00000080839.7220.38050696.56060-1.6603022.5978021.00230HepG2SUPV3L1
RBL1ENSG00000080839.7392.71730918.54450-1.2259019.1130017.52490HepG2TARDBP
RBL1ENSG00000080839.7244.75320466.88130-0.931706.628605.20150HepG2TFIP11
RBL1ENSG00000080839.7255.13970657.89490-1.3666012.9135011.96960HepG2TIAL1
RBL1ENSG00000080839.7351.90360663.62340-0.915208.496407.59330HepG2TRIM56
RBL1ENSG00000080839.7319.71650795.27670-1.314702.419401.50440HepG2U2AF2
RBL1ENSG00000080839.7213.25400411.48110-0.948307.895206.61580HepG2UCHL5
RBL1ENSG00000080839.7375.65980753.13310-1.0035019.1583017.64150HepG2UPF1
RBL1ENSG00000080839.7392.69120637.84120-0.699803.850102.65360HepG2UPF2
RBL1ENSG00000080839.7629.85440774.10800-0.297502.369001.38870HepG2UTP18
RBL1ENSG00000080839.7499.12820851.84820-0.771205.784904.28550HepG2XRCC6
RBL1ENSG00000080839.7485.73950685.68740-0.497403.142202.37120HepG2XRN2
RBL1ENSG00000080839.7377.66460828.30080-1.1330028.0845026.80640HepG2ZNF622
RBL1ENSG00000080839.7749.40330572.363600.388702.667701.51050K562AARS
RBL1ENSG00000080839.7856.309001051.01630-0.295602.852802.27670K562AGGF1
RBL1ENSG00000080839.7870.528201154.83750-0.407703.627002.46360K562AKAP8
RBL1ENSG00000080839.7821.005801093.61270-0.413603.576802.83050K562AKAP8L
RBL1ENSG00000080839.7927.465201126.29940-0.280201.904001.40050K562AQR
RBL1ENSG00000080839.72226.288801710.219400.380405.073203.74360K562CELF1
RBL1ENSG00000080839.7483.15860624.67020-0.370603.137301.71880K562DDX27
RBL1ENSG00000080839.7378.93880560.12160-0.563804.617603.22110K562DDX3X
RBL1ENSG00000080839.7922.079301189.41870-0.367302.672102.02960K562DDX47
RBL1ENSG00000080839.7921.93560613.623900.587204.352002.71260K562EEF2
RBL1ENSG00000080839.7804.57760608.599900.402603.929103.22680K562FXR1
RBL1ENSG00000080839.7944.35740619.210700.608804.298103.37390K562G3BP2
RBL1ENSG00000080839.7546.39050775.14080-0.504504.232203.25550K562GPKOW
RBL1ENSG00000080839.7733.392601189.62710-0.697908.847607.47610K562GRSF1
RBL1ENSG00000080839.7555.59770791.58470-0.510703.525602.46220K562HNRNPM
RBL1ENSG00000080839.7572.74780769.94520-0.426903.354002.00730K562IGF2BP3
RBL1ENSG00000080839.71035.596701300.22080-0.328302.918101.97720K562MBNL1
RBL1ENSG00000080839.7578.61690756.62640-0.387002.651201.79790K562METAP2
RBL1ENSG00000080839.7714.26600858.39200-0.265202.258601.52520K562MTPAP
RBL1ENSG00000080839.7816.078501092.50690-0.420902.579701.79220K562PPIG
RBL1ENSG00000080839.71933.528001614.229700.260302.645301.60340K562PUM1
RBL1ENSG00000080839.7846.019901056.76210-0.320902.887602.28330K562RBM15
RBL1ENSG00000080839.7717.06870941.08660-0.392204.023603.04880K562SF3A3
RBL1ENSG00000080839.7469.86390644.16190-0.455203.836002.82360K562SF3B4
RBL1ENSG00000080839.7362.31320757.75210-1.0645015.8403014.15110K562SRSF1
RBL1ENSG00000080839.7862.02910645.705900.416803.112501.41130K562TBRG4
RBL1ENSG00000080839.7803.426701011.32470-0.332003.532102.72800K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RBL1 is not available on ENCORE database.





6 RBPs can affect the splicing of RBL1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERBL1ENSG00000080839.7chr20-356956353569570035695395356955243569638835696589-0.542000.005330.07965excludedK562SRSF1
SERBL1ENSG00000080839.7chr20-356321043563226935624751356273323563581335635962-0.102000.009460.07774excludedK562AQR
SERBL1ENSG00000080839.7chr20-356956353569570035695395356955243569638835696589-0.263000.004880.06112excludedK562PUS1
SERBL1ENSG00000080839.7chr20-356956353569570035695395356955243569638835696589-0.397000.003030.05552excludedK562U2AF1
SERBL1ENSG00000080839.7chr20-356956353569570035695395356955243569638835696589-0.352000.000290.01041excludedK562AGGF1
A3SSRBL1ENSG00000080839.7chr20-3566855535668732356685553566868835672488356726530.138000.003790.02264longerK562AQR
MXERBL1ENSG00000080839.7chr20-35661067356612793566364435663911356510523565122935668555356686880.563000.000000.000001includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RBL1 is not avaliable on ENCORE database.